BAC Information

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BAC

Clone NameB6Ng01-249F17
Chromosome12 (Build37)
Map Location 28,207,862 - 28,208,985
singlet/doubletsinglet
Overlap genenone
Upstream gene1700020D12Rik, Sox11
Downstream geneLOC100043009, LOC669327, 1110015M06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249F17.bB6Ng01-249F17.g
ACCGA057199GA057200
length1,1611,156
definitionB6Ng01-249F17.b B6Ng01-249F17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttaagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatattgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagactttgaagtttttatcat
acagatctttcacttccttagttagagtcacgccgagataatttatatta
tttgtgactattgagaaaggggtgttgtttccctaattttctttctcagc
ctgttttattcttttggtgttagagaagccattgaccttgtttgaagtta
attttataatcccagctaactttcacgaagcctgttttatcaggtttaga
gtctctgggtggagtttttatggtcacttaatataatacctattcaatta
ctcatctgcac

gaattctgtgcctccaacatgcgactacaccaacagggactactgagagc
tcagcatggcagagtccgggcttggcagcctggcaagcagactctggaga
tatcagttccttcctgctttgaaggaggcagacagcttccctccccactt
cccccatctcctgcaaatattgcctacctctgtgttctgggctgctttgc
ctcaagggactcaactgtttctttgggttttcaggcttccggaagtacca
tgccagagatattgtgttgcataagcttaggatttccgttggagctctgg
ggagcaggtagaccaagcctgagactggacgtcatgctaggccaggagag
ggcagccagatccaagtgcctaggaagagaattcaatataaagaaacaga
cccatttctcaaatgtagggaaattggctgcttgaaagtgatatgattgg
taggaatctaagaagtaacctcacctcagcttagaggaagcatcaggaag
agctttctagagaggaaaaagaaaagaaaaaaaaacccattctagccata
agcatggaggactccaccagctgactgagcagaaagagagggacaaagcc
caattacaaaaataaaataaaataaaataaaataaaataaaataaaataa
aataaaataaaataaaataaaatgcaatactgtatcctacaaataaaatc
accaggttgatgctaagcaccctataaatgttgttctgtagttagtttct
ctcctttaaacttcattgttactacatagtgtgtgtaaaagcaggtgtgt
ctgtgtcatggttacgtgcacagtctctggaaggcagaggggagcttttt
atgagtctatcttcctttcacaagatgcagccatcagatgaggcaagcct
ttttacctgcccgagctgtcttgtttggtccagtgttatggtttctatat
gacttcctgtgatcaaatgtgatttggttctcacagccagaagcttgagg
gataggggccagattccatcacttatgctcacctggaagattagccaaac
agaacttgaaaattggaaaaggtctagacagtggtcaccatccctggttg
aaccttctttccatatttccttctcgggaaaaggttgagaagagattttg
aaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_28207862_28208985
seq2: B6Ng01-249F17.g_68_1223 (reverse)

seq1  GTCTTTC-AAATCTCT--TCAAC--TTTCCC-AGA--GGAATAT-GAAAG  41
      ||||||| ||||||||  |||||  |||||| |||  | ||||| |||||
seq2  GTCTTTCAAAATCTCTTCTCAACCTTTTCCCGAGAAGGAAATATGGAAAG  50

seq1  GAGGTTCAAC--AGGATGGTG--CACTGTCTAG-CCTTTTCC-ATTTTC-  84
       |||||||||   ||||||||  |||||||||| |||||||| |||||| 
seq2  AAGGTTCAACCAGGGATGGTGACCACTGTCTAGACCTTTTCCAATTTTCA  100

seq1  AGGTCTCTCTGG-GAATC-TCCAGGTGA-CAT-AGTGATGG-ATCT-GCC  128
      || ||| | |||  |||| ||||||||| ||| |||||||| |||| |||
seq2  AGTTCTGTTTGGCTAATCTTCCAGGTGAGCATAAGTGATGGAATCTGGCC  150

seq1  CCTATCCCTC-AGCTTCTGGCTCTGAGGACC-AATCACATTTGATCACA-  175
      |||||||||| ||||||||||| |||| ||| ||||||||||||||||| 
seq2  CCTATCCCTCAAGCTTCTGGCTGTGAGAACCAAATCACATTTGATCACAG  200

seq1  GAAGTCATATAGAAACCAT-ACACTGGACC-AACAAGACAGCTC-GGCAG  222
      ||||||||||||||||||| |||||||||| ||||||||||||| |||||
seq2  GAAGTCATATAGAAACCATAACACTGGACCAAACAAGACAGCTCGGGCAG  250

seq1  GT-AAAAGGCTTGCCTCATCTGATGGCTGCATCTTGTGAAAGG-AGATAG  270
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTAAAAAGGCTTGCCTCATCTGATGGCTGCATCTTGTGAAAGGAAGATAG  300

seq1  ACTCCT-AAAAGCTCCCCTCTGCCTTCCAGAGACTGTGCACGT-ACCATG  318
      |||| | |||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTCATAAAAAGCTCCCCTCTGCCTTCCAGAGACTGTGCACGTAACCATG  350

seq1  ACACAGACACACCTGCTTTTACACACACTATGTAGTAACAATGAAGTTTA  368
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACACACCTGCTTTTACACACACTATGTAGTAACAATGAAGTTTA  400

seq1  AAGGAGAGAAACTAACTACAGAACAACATTTATAGGGTGCTTAGCATCAA  418
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGAAACTAACTACAGAACAACATTTATAGGGTGCTTAGCATCAA  450

seq1  CCTGGTGATTTTATTTGTAGGATACAGTATTGCATTTTATTTTATTTTAT  468
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGATTTTATTTGTAGGATACAGTATTGCATTTTATTTTATTTTAT  500

seq1  TTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTG  518
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTG  550

seq1  TAATTGGGCTTTGTCCCTCTCTTTCTGCTCAGTCAGCTGGTGGAGTCCTC  568
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGGCTTTGTCCCTCTCTTTCTGCTCAGTCAGCTGGTGGAGTCCTC  600

seq1  CATGCTTATGGCTAGAATGGGTTTTTTTTTCTTTTCTTTTTCCTCTCTAG  618
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTATGGCTAGAATGGGTTTTTTTTTCTTTTCTTTTTCCTCTCTAG  650

seq1  AAAGCTCTTCCTGATGCTTCCTCTAAGCTGAGGTGAGGTTACTTCTTAGA  668
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTTCCTGATGCTTCCTCTAAGCTGAGGTGAGGTTACTTCTTAGA  700

seq1  TTCCTACCAATCATATCACTTTCAAGCAGCCAATTTCCCTACATTTGAGA  718
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACCAATCATATCACTTTCAAGCAGCCAATTTCCCTACATTTGAGA  750

seq1  AATGGGTCTGTTTCTTTATATTGAATTCTCTTCCTAGGCACTTGGATCTG  768
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTCTGTTTCTTTATATTGAATTCTCTTCCTAGGCACTTGGATCTG  800

seq1  GCTGCCCTCTCCTGGCCTAGCATGACGTCCAGTCTCAGGCTTGGTCTACC  818
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCTCTCCTGGCCTAGCATGACGTCCAGTCTCAGGCTTGGTCTACC  850

seq1  TGCTCCCCAGAGCTCCAACGGAAATCCTAAGCTTATGCAACACAATATCT  868
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCAGAGCTCCAACGGAAATCCTAAGCTTATGCAACACAATATCT  900

seq1  CTGGCATGGTACTTCCGGAAGCCTGAAAACCCAAAGAAACAGTTGAGTCC  918
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATGGTACTTCCGGAAGCCTGAAAACCCAAAGAAACAGTTGAGTCC  950

seq1  CTTGAGGCAAAGCAGCCCAGAACACAGAGGTAGGCAATATTTGCAGGAGA  968
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGCAAAGCAGCCCAGAACACAGAGGTAGGCAATATTTGCAGGAGA  1000

seq1  TGGGGGAAGTGGGGAGGGAAGCTGTCTGCCTCCTTCAAAGCAGGAAGGAA  1018
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAAGTGGGGAGGGAAGCTGTCTGCCTCCTTCAAAGCAGGAAGGAA  1050

seq1  CTGATATCTCCAGAGTCTGCTTGCCAGGCTGCCAAGCCCGGACTCTGCCA  1068
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATCTCCAGAGTCTGCTTGCCAGGCTGCCAAGCCCGGACTCTGCCA  1100

seq1  TGCTGAGCTCTCAGTAGTCCCTGTTGGTGTAGTCGCATGTTGGAGGCACA  1118
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCTCTCAGTAGTCCCTGTTGGTGTAGTCGCATGTTGGAGGCACA  1150

seq1  GAATTC  1124
      ||||||
seq2  GAATTC  1156


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