BAC Information

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BAC

Clone NameB6Ng01-250C17
Chromosome12 (Build37)
Map Location 88,366,858 - 88,509,731
singlet/doubletdoublet
Overlap geneTmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8
Upstream geneTtll5, Tgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22
Downstream geneGm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250C17.bB6Ng01-250C17.g
ACCGA057791GA057792
length1,158816
definitionB6Ng01-250C17.b B6Ng01-250C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,508,573 - 88,509,731)(88,366,858 - 88,367,671)
sequence
gaattcattcactgcattagtgctactttgttcattggaactgttttgta
agccagagccttacttgttcttcttgtgctcagtggagaactctccagcc
ctttgtgccatctgttagcaggatcagctagatgcatttttgggtaggtc
ttctctgctacaggtaaccctgaccggaggattggtttcctgtctccatc
ctttggggctgaagagagagtcagtcagttccacttgtggtgcagacgct
acagttgtgaatgtgtcctcaaaggcatagttaagatgcatttgtctaac
agcacaaaccctgcagtcacgtgagtgcttaggtaacaagcaggcctcga
tagcctgacagcattgacatgttaaaccacacagagcacaccacacagcg
ttttctctgtcagggcttctatttagagtttctcctgaggctaaacatcc
acattaactcctgcccctatttttttcccatgaccagaagtgtagaatgt
ctacactttgggaaaggggaattacatgttcccttcagaccctttgctgt
ttgaaaaggcaagttttcatctgaaggaagggaaccagggtcctgttata
cgggtagttggttaaagggtgtgggttctgtaaaaagcaagtccttgtgc
ccattgtgtgcctgaggtcagggagctgcacactccttctttggggagta
gaaaatgaggatcagaacccaggcacgtgttgggtacccagttcccaatg
acccgagcaagcactctttagtcctggtagcattttgggtgactctcagg
caagaacttctggatctctgtgtatctgatgctggtcactgacagacttg
ccctttgtgtaacttctgtaacacctgtgggcattcccaaagaagatcca
tttatctaggtgatgtgattagagggacttgtgatccagtgtgcagagaa
acactgtaagcactttgtggccaaatttgcagtcactgttcctgctgagg
atgtaatgtggccccttgaaccagaaggctaaccagagactctgaaacac
ttgcttccaagctaaagaaaacacaatcatggactaaggcctgaataggt
atcgattgatagaactgctcctttacaatcgttcaattctcatgaactag
tgcaaaga
gaattccaggacagccagggctatacagagaaaccctgtctcgaaacccc
ccccccccaaaaaaaaagcatggttggcaggtctttggtgaagcctgaga
cccacttgaggagtgtggtcctgacagaatggaccggacttatcgcgttc
ctgtgggcctcctgggtggggttctggtcaatttataaacctttcttttg
ttgaagaaggagtcagcactgagccatgcccggatatggtcctagggtgt
ggcacagtgctaccttggtgaggttgaatgtgtttccttgcttctgacta
gctgggctaggaggcctcagaggagagtttgaagcgtgggagaaggtggg
tggacaaggcagctgccaaggcccagagaacctcagttgttgcaaaccgc
agccagggagcggcagccttgtgcattcgcgatggtcatggtttctgata
actacaggatttccagggcagagccttggtccctgcttatctagcccggg
ttcccccacaggtcagagcagcgttgggcggggccaaggttgactcctac
tgggaggagccgggatgccgctcccgcggtgatgcagaggggaatttgct
gacagtcccttgccaggtggagctggctttaccaggccgctaaaaagaag
gaggaggaggacccacccgcagtctcctctcaggtagagtgttgtctgtc
actgatcctggtagcccgagctcctcgcctggggttggcagtggccgtga
gggcgcagatgcggtgagctgcccggtagaagggatgagagaatccgggt
cttggacccagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_88508573_88509731
seq2: B6Ng01-250C17.b_46_1203 (reverse)

seq1  TCTTTGCACTTAGTTCATGAGGAATG-ACGATTTGTAAAGGAGCCAGTCT  49
      ||||||||| ||||||||||| | || |||| ||||||||||||   |||
seq2  TCTTTGCAC-TAGTTCATGAGAATTGAACGA-TTGTAAAGGAGCAGTTCT  48

seq1  ATCAATCGATACCCTATCAGGCTTTATGTCATTGATTGTGTTTTC-TTAG  98
      |||||||||||||   |||||| ||| |||  ||||||||||||| ||||
seq2  ATCAATCGATACCTATTCAGGCCTTA-GTCCATGATTGTGTTTTCTTTAG  97

seq1  CTTTG-AGACAGTGGTTCAGAGTCTCTGGTTAGCCTTCTTGGTTCAAGGG  147
      ||| | ||  |||| ||||||||||||||||||||||| |||||||| ||
seq2  CTTGGAAGCAAGTGTTTCAGAGTCTCTGGTTAGCCTTC-TGGTTCAA-GG  145

seq1  GGCAACATTACAT-CTCAGCAGGAACAGTGACTGCAAATTTGGCCACAAA  196
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGCCACATTACATCCTCAGCAGGAACAGTGACTGCAAATTTGGCCACAAA  195

seq1  GTGCTTACAGTGTTTCTCTGCACACTGGATCACAAGTCCCTCTAATCACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTACAGTGTTTCTCTGCACACTGGATCACAAGTCCCTCTAATCACA  245

seq1  TCACCTAGATAAATGGATCTTCTTTGGGAATGCCCACAGGTGTTACAGAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAGATAAATGGATCTTCTTTGGGAATGCCCACAGGTGTTACAGAA  295

seq1  GTTACACAAAGGGCAAGTCTGTCAGTGACCAGCATCAGATACACAGAGAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACAAAGGGCAAGTCTGTCAGTGACCAGCATCAGATACACAGAGAT  345

seq1  CCAGAAGTTCTTGCCTGAGAGTCACCCAAAATGCTACCAGGACTAAAGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTTCTTGCCTGAGAGTCACCCAAAATGCTACCAGGACTAAAGAG  395

seq1  TGCTTGCTCGGGTCATTGGGAACTGGGTACCCAACACGTGCCTGGGTTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTCGGGTCATTGGGAACTGGGTACCCAACACGTGCCTGGGTTCT  445

seq1  GATCCTCATTTTCTACTCCCCAAAGAAGGAGTGTGCAGCTCCCTGACCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCATTTTCTACTCCCCAAAGAAGGAGTGTGCAGCTCCCTGACCTC  495

seq1  AGGCACACAATGGGCACAAGGACTTGCTTTTTACAGAACCCACACCCTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACACAATGGGCACAAGGACTTGCTTTTTACAGAACCCACACCCTTT  545

seq1  AACCAACTACCCGTATAACAGGACCCTGGTTCCCTTCCTTCAGATGAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACTACCCGTATAACAGGACCCTGGTTCCCTTCCTTCAGATGAAAA  595

seq1  CTTGCCTTTTCAAACAGCAAAGGGTCTGAAGGGAACATGTAATTCCCCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTTTCAAACAGCAAAGGGTCTGAAGGGAACATGTAATTCCCCTT  645

seq1  TCCCAAAGTGTAGACATTCTACACTTCTGGTCATGGGAAAAAAATAGGGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGTGTAGACATTCTACACTTCTGGTCATGGGAAAAAAATAGGGG  695

seq1  CAGGAGTTAATGTGGATGTTTAGCCTCAGGAGAAACTCTAAATAGAAGCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTAATGTGGATGTTTAGCCTCAGGAGAAACTCTAAATAGAAGCC  745

seq1  CTGACAGAGAAAACGCTGTGTGGTGTGCTCTGTGTGGTTTAACATGTCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGAGAAAACGCTGTGTGGTGTGCTCTGTGTGGTTTAACATGTCAA  795

seq1  TGCTGTCAGGCTATCGAGGCCTGCTTGTTACCTAAGCACTCACGTGACTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCAGGCTATCGAGGCCTGCTTGTTACCTAAGCACTCACGTGACTG  845

seq1  CAGGGTTTGTGCTGTTAGACAAATGCATCTTAACTATGCCTTTGAGGACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTGTGCTGTTAGACAAATGCATCTTAACTATGCCTTTGAGGACA  895

seq1  CATTCACAACTGTAGCGTCTGCACCACAAGTGGAACTGACTGACTCTCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAACTGTAGCGTCTGCACCACAAGTGGAACTGACTGACTCTCTC  945

seq1  TTCAGCCCCAAAGGATGGAGACAGGAAACCAATCCTCCGGTCAGGGTTAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCCCAAAGGATGGAGACAGGAAACCAATCCTCCGGTCAGGGTTAC  995

seq1  CTGTAGCAGAGAAGACCTACCCAAAAATGCATCTAGCTGATCCTGCTAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCAGAGAAGACCTACCCAAAAATGCATCTAGCTGATCCTGCTAAC  1045

seq1  AGATGGCACAAAGGGCTGGAGAGTTCTCCACTGAGCACAAGAAGAACAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCACAAAGGGCTGGAGAGTTCTCCACTGAGCACAAGAAGAACAAG  1095

seq1  TAAGGCTCTGGCTTACAAAACAGTTCCAATGAACAAAGTAGCACTAATGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTCTGGCTTACAAAACAGTTCCAATGAACAAAGTAGCACTAATGC  1145

seq1  AGTGAATGAATTC  1159
      |||||||||||||
seq2  AGTGAATGAATTC  1158

seq1: chr12_88366858_88367671
seq2: B6Ng01-250C17.g_69_884

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAACCCC  50

seq1  CCCCCCCCAAAAAAAAAGCATGGTTGGCAGGTCTTTGGTGAAGCCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCAAAAAAAAAGCATGGTTGGCAGGTCTTTGGTGAAGCCTGAGA  100

seq1  CCCACTTGAGGAGTGTGGTCCTGACAGAATGGACCGGACTTATCGCGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTGAGGAGTGTGGTCCTGACAGAATGGACCGGACTTATCGCGTTC  150

seq1  CTGTGGGCCTCCTGGGTGGGGTTCTGGTCAATTTATAAACCTTTCTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCCTCCTGGGTGGGGTTCTGGTCAATTTATAAACCTTTCTTTTG  200

seq1  TTGAAGAAGGAGTCAGCACTGAGCCATGCCCGGATATGGTCCTAGGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAGGAGTCAGCACTGAGCCATGCCCGGATATGGTCCTAGGGTGT  250

seq1  GGCACAGTGCTACCTTGGTGAGGTTGAATGTGTTTCCTTGCTTCTGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGTGCTACCTTGGTGAGGTTGAATGTGTTTCCTTGCTTCTGACTA  300

seq1  GCTGGGCTAGGAGGCCTCAGAGGAGAGTTTGAAGCGTGGGAGAAGGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCTAGGAGGCCTCAGAGGAGAGTTTGAAGCGTGGGAGAAGGTGGG  350

seq1  TGGACAAGGCAGCTGCCAAGGCCCAGAGAACCTCAGTTGTTGCAAACCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAGGCAGCTGCCAAGGCCCAGAGAACCTCAGTTGTTGCAAACCGC  400

seq1  AGCCAGGGAGCGGCAGCCTTGTGCATTCGCGATGGTCATGGTTTCTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGAGCGGCAGCCTTGTGCATTCGCGATGGTCATGGTTTCTGATA  450

seq1  ACTACAGGATTTCCAGGGCAGAGCCTTGGTCCCTGCTTATCTAGCCCGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGGATTTCCAGGGCAGAGCCTTGGTCCCTGCTTATCTAGCCCGGG  500

seq1  TTCCCCCACAGGTCAGAGCAGCGTTGGGCGGGGCCAAGGTTGACTCCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCACAGGTCAGAGCAGCGTTGGGCGGGGCCAAGGTTGACTCCTAC  550

seq1  TGGGAGGAGCCGGGATGCCGCTCCCGCGGTGATGCAGAGGGGAATTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAGCCGGGATGCCGCTCCCGCGGTGATGCAGAGGGGAATTTGCT  600

seq1  GACAGTCCCTTGCCAGGTGGAGCTGGCTTTACCAGGCCGCTAAAAAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCCCTTGCCAGGTGGAGCTGGCTTTACCAGGCCGCTAAAAAGAAG  650

seq1  GAGGAGGAGGACCCACCCGCAGTCTCCTCTCAGGTAGAGTGTTGTCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAGGACCCACCCGCAGTCTCCTCTCAGGTAGAGTGTTGTCTGTC  700

seq1  ACTGATCCTGGTAGCCCGAGCTCCTCGCCTGGGGTTGGCAGTGGCCGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCCTGGTAGCCCGAGCTCCTCGCCTGGGGTTGGCAGTGGCCGTGA  750

seq1  GGGCGCAGATGCGGTGAGCTG-CCGGTAGAAGGGATGAGAGAATCCGGGT  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGGCGCAGATGCGGTGAGCTGCCCGGTAGAAGGGATGAGAGAATCCGGGT  800

seq1  CTTGGA-CCAGGGAGG  814
      |||||| |||||||||
seq2  CTTGGACCCAGGGAGG  816