BAC Information

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BAC

Clone NameB6Ng01-252C21
Chromosome12 (Build37)
Map Location 19,708,565 - 19,709,493
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668558, LOC100042641, LOC668568, LOC668570, EG668413, LOC671401, EG546524, EG668584, EG544848, EG627871, LOC100042698, LOC629055, EG668588
Downstream geneLOC100042706, EG668594, EG668600, LOC100042727, LOC673301, EG668605, LOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755, LOC100043377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252C21.bB6Ng01-252C21.g
ACCGA059247GA059248
length1,233945
definitionB6Ng01-252C21.b B6Ng01-252C21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactcagacaacccgattcttctacagcaaaactttattgcttca
tctgaaggaagaccccgaacaaggaaaatggtgctgcttatatacccctg
agtgtgacgtgtcagctcctgattagctgctcactcatcaccccactact
acaccccggggtgggcagtgacttggcaccaatttactcttgcacctgtg
cacattacttgtttaccaattaggcacagcggaggccagcgccatcttgt
aatggcgattgctcatggctctccacatctcctcctttttattttattaa
aacgcaagtcactctttaatggatgaggatagaggtcgaattactagtgt
gcagaaataggggccatgtacaggattgactcttaagctcacaggctttt
accccgagcaaccctgacctgctcccatgccgtttttcctgggggaggga
cacttggatactcaaccctcatgtaaatcgacttgtcttctaggagtgcc
caaacctctgagcgtctcctatgcggtgcttagcccaacaatccataaga
gtcaacgacctactcactcgtccttgtgcaatgagtctagcctctagggg
tgcaagagctgagtatggcctagggtgagctttaattgttgagtctctct
cattttccgcagaaccgaggtgtgcaagagcagagaactcagatgccaat
taagacttacgcatggatagccaaatttcaggggaggtcccttgttcaat
ggctgcaagtgcttgagcaataacgacattgtcacgattttgttgggttc
tgagcttgcagaccaaccagagcatgaacacaagcccacagcagatggca
gcagcaaacaaaactacccccacccacttcttaaaataagaaaatgcaga
tgaaatccaggaagagaggccctctgtcaatgacaggtctactcgcgtcg
agttgatccttagaacggccactctcagggcctcaagtgtctcatcgatc
cttcagaccaatttcctgcagatacaaggagagctgttctagacagatag
ctgcatggagtaaattttttcatatgaacacttggtaatgcacagagcac
tctattttcttcacaggccactgggccaacttgtatagaacctattcatt
tctcaccagattgaggcctgatccaaatcataagccctccctcacatggc
acctagcgcaggttgcagattatgtagaactgc
gaattccccaccagaacctcaggaaagggccagtgggacagtgtgggtag
ctcgcccccaacaagacagtgaaatcctccagggcactttagcgggacaa
gatgtagggacagttggggatgcaatgatagggaccatgttctgtgtgtg
agctttctcacagccttaagaaggcaggggtaaaggcaggtattttgcat
agggagttgaccatggtacaagccgaatgggaattcaaacccatgacctt
cgacttggaagaatactccaacccctagtaagcatcgtgttccctaagct
tatacaattagggacactcccagttacttgaagacagttttagggtgcta
ggccagacatcaccctgagaagatcatagaatgcacttatgtgctgtgag
aagtgggggatacccaagagaaccagaggtagagcatgggggtggggggt
attgtacctgatggttctcagagagtactccaacccacacctgactgatc
acagacacaactgggccaataaatcatctgaattatgacattttcgtcta
tagctcatttagaaattctcagctgtatttaaaaaacccagaggttctga
agacactagtcaaaaatcacaccctctaactccctgaggcaagaggcatg
gtttactgctgctgccaacattacagcctagagaaaacttttacaaaaac
ctttttgtgggtctgaaaaggagggaatgtgagggacattgtaaacccca
acatggggaataaaaagtggtctcctgctgccataggacagtagaccact
caatcctttttaagggttcccatgttacaaatctgctgtatggaggtagc
agctgaaggtcagacattctgtatggcttctggtaatttttaccagccac
tgcctgtgaataagttcagctttctaaaaatagcttgtgccaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_19708565_19709493
seq2: B6Ng01-252C21.g_70_1014 (reverse)

seq1  CACTGGCAC-AGCTATTTTT-GAAGGCTGAACTTATTCACAGGCAGT-GC  47
      | ||||||| |||||||||| ||| |||||||||||||||||||||| ||
seq2  CCCTGGCACAAGCTATTTTTAGAAAGCTGAACTTATTCACAGGCAGTGGC  50

seq1  TGGTAAAA--TACCAGAAGCCATACAGAATGTCTGACC-TCAGCTGCTAC  94
      ||||||||  |||||||||||||||||||||||||||| |||||||||||
seq2  TGGTAAAAATTACCAGAAGCCATACAGAATGTCTGACCTTCAGCTGCTAC  100

seq1  CT-CATACAGCAGATTTGT-ACATGGG-AGCCTTAAAAA-GATTGAGTGG  140
      || |||||||||||||||| ||||||| | ||||||||| ||||||||||
seq2  CTCCATACAGCAGATTTGTAACATGGGAACCCTTAAAAAGGATTGAGTGG  150

seq1  TCTACTGTCCTATGGCAGCAGGAGACCAC-TTTTATTTCCCATGTT-GGG  188
      ||||||||||||||||||||||||||||| ||||||| |||||||| |||
seq2  TCTACTGTCCTATGGCAGCAGGAGACCACTTTTTATTCCCCATGTTGGGG  200

seq1  TTTACAATGTCCCTCACATTCCCTCCTTTTCAGACCCAC-AAAAGGTTTT  237
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTACAATGTCCCTCACATTCCCTCCTTTTCAGACCCACAAAAAGGTTTT  250

seq1  TGTAAA--GTTTCTCTAGGCTGTAATGTTGGCAGCAGCAGT-AACCATGC  284
      ||||||   |||||||||||||||||||||||||||||||| ||||||||
seq2  TGTAAAAGTTTTCTCTAGGCTGTAATGTTGGCAGCAGCAGTAAACCATGC  300

seq1  CTCTTGCCTCAGGGAGTTAGAGGGTGTGATTTTTGACTAGTGTCTTCAGA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCTCAGGGAGTTAGAGGGTGTGATTTTTGACTAGTGTCTTCAGA  350

seq1  ACCTCTGGGTTTTTTAAATACAGCTGAGAATTTCTGAATGAGCTATAGAC  384
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACCTCTGGGTTTTTTAAATACAGCTGAGAATTTCTAAATGAGCTATAGAC  400

seq1  GAAAATGTCATAATTCAGATGATTTATTGGCCCAGTTGTGTCTGTGATCA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTCATAATTCAGATGATTTATTGGCCCAGTTGTGTCTGTGATCA  450

seq1  GTCAGGTGTGGGTTGGAGTACTCTCTGAGAACCATCAGGTACAATACCCC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTGTGGGTTGGAGTACTCTCTGAGAACCATCAGGTACAATACCCC  500

seq1  CCACCCCCATGCTCTACCTCTGGTTCTCTTGGGTATCCCCCACTTCTCAC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCATGCTCTACCTCTGGTTCTCTTGGGTATCCCCCACTTCTCAC  550

seq1  AGCACATAAGTGCATTCTATGATCTTCTCAGGGTGATGTCTGGCCTAGCA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATAAGTGCATTCTATGATCTTCTCAGGGTGATGTCTGGCCTAGCA  600

seq1  CCCTAAAACTGTCTTCAAGTAACTGGGAGTGTCCCTAATTGTATAAGCTT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAACTGTCTTCAAGTAACTGGGAGTGTCCCTAATTGTATAAGCTT  650

seq1  AGGGAACACGATGCTTACTAGGGGTTGGAGTATTCTTCCAAGTCGAAGGT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACACGATGCTTACTAGGGGTTGGAGTATTCTTCCAAGTCGAAGGT  700

seq1  CATGGGTTTGAATTCCCATTCGGCTTGTACCATGGTCAACTCCCTATGCA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTTTGAATTCCCATTCGGCTTGTACCATGGTCAACTCCCTATGCA  750

seq1  AAATACCTGCCTTTACCCCTGCCTTCTTAAGGCTGTGAGAAAGCTCACAC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTGCCTTTACCCCTGCCTTCTTAAGGCTGTGAGAAAGCTCACAC  800

seq1  ACAGAACATGGTCCCTATCATTGCATCCCCAACTGTCCCTACATCTTGTC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACATGGTCCCTATCATTGCATCCCCAACTGTCCCTACATCTTGTC  850

seq1  CCGCTAAAGTGCCCTGGAGGATTTCACTGTCTTGTTGGGGGCGAGCTACC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTAAAGTGCCCTGGAGGATTTCACTGTCTTGTTGGGGGCGAGCTACC  900

seq1  CACACTGTCCCACTGGCCCTTTCCTGAGGTTCTGGTGGGGAATTC  929
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTCCCACTGGCCCTTTCCTGAGGTTCTGGTGGGGAATTC  945