BAC Information

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BAC

Clone NameB6Ng01-252M08
Chromosome12 (Build37)15 (Build37)
Map Location 32,233,652 - 32,233,771102,609,748 - 102,610,063
singlet/doubletsingletsinglet
Overlap geneSlc26a4
Upstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1
Downstream geneLOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg, 2010109K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252M08.bB6Ng01-252M08.g
ACCGA059679GA059680
length392316
definitionB6Ng01-252M08.b B6Ng01-252M08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,233,652 - 32,233,771)(102,609,748 - 102,610,063)
sequence
actgtagggctggagagatggctcagcggttaagagcaccgactgttctt
tcagaggtcctgagttcaattcccagcaaccatatggtggctcacaacca
tctgtaatgggatctgatgccctcttcaggtgtgtctgaagacagctaca
gtgtactcatgtaaataaattaataaatctgaagaaggagaagaagaaga
agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaaagaattcaccggcccatactggcttgaatg
tgtaacagttttctgtggaggtctctgagtgctggaattacaggtatgag
ctaccacacccagcttaatttccagggctctgaaaaagctga
tcaggacccagacaagactgaagagaagcaaaattgggatcagcagctga
ccagttctagatgctagaaggttggggagtagctatttgtcaaagaaacc
ttctaaaggatgaatttagggagcaagacagtgctggtcttacaatgagg
ggactcttgtactgtgaaaatgagtaaacctcggttcaatgcaactgggt
attaagactccttatgtgcctcgcacttggctgggtgctgaaggcagtaa
ataagatacacactccttaccaggaatagacagtcaggtgtgtgtattgg
tggatgagggggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32233652_32233771
seq2: B6Ng01-252M08.b_58_177 (reverse)

seq1  GAAGAGGGCATCAGCTCCCATTACAGATGGTTGTGAGCCACCAAGTGGTT  50
      |||||||||||||| ||||||||||||||||||||||||||||  |||||
seq2  GAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATATGGTT  50

seq1  GCTGGAAATTGAACTCAGGACCTCTGAAAGAGCAGACAGTGAACTTAAGC  100
      ||||| ||||||||||||||||||||||||| ||| | |||  ||||| |
seq2  GCTGGGAATTGAACTCAGGACCTCTGAAAGAACAGTCGGTGCTCTTAACC  100

seq1  GCTGAGCCAACTCTCCAGCC  120
      ||||||||| ||||||||||
seq2  GCTGAGCCATCTCTCCAGCC  120

seq1: chr15_102609748_102610063
seq2: B6Ng01-252M08.g_76_391 (reverse)

seq1  CTCTCCCCCTCATCCACCAATACACACACCTGACTGTCTATTCCTGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCCTCATCCACCAATACACACACCTGACTGTCTATTCCTGGTAA  50

seq1  GGAGTGTGTATCTTATTTACTGCCTTCAGCACCCAGCCAAGTGCGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGTATCTTATTTACTGCCTTCAGCACCCAGCCAAGTGCGAGGCA  100

seq1  CATAAGGAGTCTTAATACCCAGTTGCATTGAACCGAGGTTTACTCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGAGTCTTAATACCCAGTTGCATTGAACCGAGGTTTACTCATTTT  150

seq1  CACAGTACAAGAGTCCCCTCATTGTAAGACCAGCACTGTCTTGCTCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTACAAGAGTCCCCTCATTGTAAGACCAGCACTGTCTTGCTCCCTA  200

seq1  AATTCATCCTTTAGAAGGTTTCTTTGACAAATAGCTACTCCCCAACCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCCTTTAGAAGGTTTCTTTGACAAATAGCTACTCCCCAACCTTC  250

seq1  TAGCATCTAGAACTGGTCAGCTGCTGATCCCAATTTTGCTTCTCTTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTAGAACTGGTCAGCTGCTGATCCCAATTTTGCTTCTCTTCAGT  300

seq1  CTTGTCTGGGTCCTGA  316
      ||||||||||||||||
seq2  CTTGTCTGGGTCCTGA  316