BAC Information

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BAC

Clone NameB6Ng01-254B19
Chromosome12 (Build37)
Map Location 19,612,815 - 19,792,760
singlet/doubletdoublet
Overlap geneEG668588, LOC100042706
Upstream geneEG668553, LOC668558, LOC100042641, LOC668568, LOC668570, EG668413, LOC671401, EG546524, EG668584, EG544848, EG627871, LOC100042698, LOC629055
Downstream geneEG668594, EG668600, LOC100042727, LOC673301, EG668605, LOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755, LOC100043377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254B19.bB6Ng01-254B19.g
ACCGA060665GA060666
length1,1441,172
definitionB6Ng01-254B19.b B6Ng01-254B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,791,623 - 19,792,760)(19,612,815 - 19,613,969)
sequence
gaattcagtgagggtttccccactaggttctttcagtggcaagaccaagg
ttattctaaagacacactttgccctcccttcagttttctgaggactgtga
caatagaccccaaggaactggaattttcaccaggaatttcaagctgacat
tgggaaagtactgggaccctgacactagacagagcaggagtctgtctcta
gtgctggcagcctgcatgacagatatggggaagggttgtgtgctgagaag
tgacaaggatgagttgaccatgggctgaatcttgagtaagattgccaaac
ctaaacacatctgtagtcaggagcagagagagatggatcctggtgctcag
ttgctttctccattttattcagcccgggaaccaacctacagaacggtgct
accaacacttagggtgagtctttcctttatataaaaggaaaatttctagg
tgctacctagaaattaccctgcagatgtgtccacagttttatcgtctagg
taattctaaattccatcaaattgacaatcattatccaccctcacagagcc
atcagtgagtaggtggtgatcctcattagtgggagcactggatgtagagt
caagggacattgttcttgcaatggccttgctggtagtcacacttgtggga
aacagccagactctgctgtccttcttgcttagccctcagttccagcacca
tataaaatgggtttggaggtacatgcctgtgatgctagtacttgaaagca
gtttgttattgtttgtttttccagacagggtttctctgtgtagcactggc
tatcctggaactcactctgtagaccaggctggcctccaaatcagagattc
agctgactctgcctcctgagtgttggaattaaagtcctgcaccatcactg
cccagctcaagattatctttatatcagaccaacctgggatgcataagact
ctgtctgaaaagacacaaacaaacacaaaaccccactgtctcccataaca
gtagttagtttaagatgactgtaccaattcatcatgtcttcttcactttc
ctggggctattgtaaaaaaaaaaaggttaaacagttaaggtgcctccaca
tgtaaatgtgtcaatcttagcaattctagacgaatcaatgtgct
tggccgagacccttgaggactacaaggcgcccacggcttctagcttcacc
acgggcacggcccagtgccgggacaccgcggcggccatcgaggaggtgag
cggtagcatagcccgcaatgggcgggaggctagggtcgcagggatcgcgc
tgcgccctgggcacctgttaggcttccgcgcttggtgcccgatacccagt
gccctccggctgcgcccacacctgggaaaagtttctggtaccctaaagcc
ggacgcagccggaccagcagtgcccgacacagaagccctttgttccctgc
tctagggagaggctgcttggccaccttgggccttttttggggaacgctcc
tctattcccatttccagcgcagggtttcaggttctttgctcccatcctcg
gagaggtcaacttcagctccagagtctgtgacggcttcgagccggggacc
cctgcgagctctgcggcccaggagtgatgggtctccctgcgcggacctct
ccaacttgttccggaagtagcccggcgggggcagctgtggcttctgagcc
aacatgtagagcagatccagggaccccaagctgcttaggcaccggtgacc
atcccatcttgggaggcctggcagtgcccactacttgccacagagcagcg
ctgtagagggatgtggagaatggtctctttgaggtacaaaaggtctttgg
tggccacttctgggctacctgtgtggtgcctgttgacagtatgatcagct
cctttgcccttaacctgggtaagttatccacctggataactgcatagtca
ttgtattgatggctagcagcgagctctccagaccctggggaagagggact
gcgagaaggaagcagtttgggttgaaattgaagcaagcttggagaggctg
tgtgagtccagagaccacggctgtccacagcttggggaagctctcaactt
aacatcattttctttaccttcccccaaacagaatttagagttttcgtgtt
tttcagcttctataaggctttgtgcgtccagcttggaactcaccaaaggg
tagcctggaagaaacgaaggacacacatggtgtaggcagtagtgaccgga
ttgacctacattttcttttggctcagatttaagattcaaggtagacatta
aaatactttggtccgagattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_19791623_19792760
seq2: B6Ng01-254B19.b_47_1190 (reverse)

seq1  AGCACATTGA-TCGTCTAGAA-TGCTAAGA-TGACACATTACCATGT-GA  46
      |||||||||| |||||||||| |||||||| |||||||||  ||||| ||
seq2  AGCACATTGATTCGTCTAGAATTGCTAAGATTGACACATTTACATGTGGA  50

seq1  GCCACCCTAACTG-TTAACC-TTTTTTTTTTACAATAGCCCCAGG-AAGT  93
      | |||| |||||| |||||| |||||||||||||||||||||||| ||||
seq2  GGCACCTTAACTGTTTAACCTTTTTTTTTTTACAATAGCCCCAGGAAAGT  100

seq1  GAAGAAGACACTGATGAA-TGGTACAGTCATCTTAAACTAACTACTGTTA  142
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  GAAGAAGACA-TGATGAATTGGTACAGTCATCTTAAACTAACTACTGTTA  149

seq1  TGGGAGACAGTGGGGTTTTGTGTTTGTTTGTTGTCTTTTCAGACAGAGTC  192
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGGAGACAGTGGGGTTTTGTGTTTGTTTG-TGTCTTTTCAGACAGAGTC  198

seq1  TTATGCATCCCAGGTTGGTCTGATATAAAGATAATCTTGAGCTGGGCAGT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATCCCAGGTTGGTCTGATATAAAGATAATCTTGAGCTGGGCAGT  248

seq1  GATGGTGCAGGACTTTAATTCCAACACTCAGGAGGCAGAGTCAGCTGAAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGCAGGACTTTAATTCCAACACTCAGGAGGCAGAGTCAGCTGAAT  298

seq1  CTCTGATTTGGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGATAGCCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTTGGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGATAGCCA  348

seq1  GTGCTACACAGAGAAACCCTGTCTGGAAAAACAAACAATAACAAACTGCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACACAGAGAAACCCTGTCTGGAAAAACAAACAATAACAAACTGCT  398

seq1  TTCAAGTACTAGCATCACAGGCATGTACCTCCAAACCCATTTTATATGGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTACTAGCATCACAGGCATGTACCTCCAAACCCATTTTATATGGT  448

seq1  GCTGGAACTGAGGGCTAAGCAAGAAGGACAGCAGAGTCTGGCTGTTTCCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAACTGAGGGCTAAGCAAGAAGGACAGCAGAGTCTGGCTGTTTCCC  498

seq1  ACAAGTGTGACTACCAGCAAGGCCATTGCAAGAACAATGTCCCTTGACTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTGACTACCAGCAAGGCCATTGCAAGAACAATGTCCCTTGACTC  548

seq1  TACATCCAGTGCTCCCACTAATGAGGATCACCACCTACTCACTGATGGCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCAGTGCTCCCACTAATGAGGATCACCACCTACTCACTGATGGCT  598

seq1  CTGTGAGGGTGGATAATGATTGTCAATTTGATGGAATTTAGAATTACCTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGGTGGATAATGATTGTCAATTTGATGGAATTTAGAATTACCTA  648

seq1  GACGATAAAACTGTGGACACATCTGCAGGGTAATTTCTAGGTAGCACCTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATAAAACTGTGGACACATCTGCAGGGTAATTTCTAGGTAGCACCTA  698

seq1  GAAATTTTCCTTTTATATAAAGGAAAGACTCACCCTAAGTGTTGGTAGCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTCCTTTTATATAAAGGAAAGACTCACCCTAAGTGTTGGTAGCA  748

seq1  CCGTTCTGTAGGTTGGTTCCCGGGCTGAATAAAATGGAGAAAGCAACTGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCTGTAGGTTGGTTCCCGGGCTGAATAAAATGGAGAAAGCAACTGA  798

seq1  GCACCAGGATCCATCTCTCTCTGCTCCTGACTACAGATGTGTTTAGGTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGATCCATCTCTCTCTGCTCCTGACTACAGATGTGTTTAGGTTT  848

seq1  GGCAATCTTACTCAAGATTCAGCCCATGGTCAACTCATCCTTGTCACTTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCTTACTCAAGATTCAGCCCATGGTCAACTCATCCTTGTCACTTC  898

seq1  TCAGCACACAACCCTTCCCCATATCTGTCATGCAGGCTGCCAGCACTAGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACACAACCCTTCCCCATATCTGTCATGCAGGCTGCCAGCACTAGA  948

seq1  GACAGACTCCTGCTCTGTCTAGTGTCAGGGTCCCAGTACTTTCCCAATGT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACTCCTGCTCTGTCTAGTGTCAGGGTCCCAGTACTTTCCCAATGT  998

seq1  CAGCTTGAAATTCCTGGTGAAAATTCCAGTTCCTTGGGGTCTATTGTCAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGAAATTCCTGGTGAAAATTCCAGTTCCTTGGGGTCTATTGTCAC  1048

seq1  AGTCCTCAGAAAACTGAAGGGAGGGCAAAGTGTGTCTTTAGAATAACCTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCAGAAAACTGAAGGGAGGGCAAAGTGTGTCTTTAGAATAACCTT  1098

seq1  GGTCTTGCCACTGAAAGAACCTAGTGGGGAAACCCTCACTGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGCCACTGAAAGAACCTAGTGGGGAAACCCTCACTGAATTC  1144

seq1: chr12_19612815_19613969
seq2: B6Ng01-254B19.g_74_1245

seq1  TGGCCGAGACCCTTGAGGACTACAAGGCGCCCACGGCTTCTAGCTTCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGAGACCCTTGAGGACTACAAGGCGCCCACGGCTTCTAGCTTCACC  50

seq1  ACGGGCACGGCCCAGTGCCGGGACACCGCGGCGGCCATCGAGGAGGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCACGGCCCAGTGCCGGGACACCGCGGCGGCCATCGAGGAGGTGAG  100

seq1  CGGTAGCATAGCCCGCAATGGGCGGGAGGCTAGGGTCGCAGGGATCGCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGCATAGCCCGCAATGGGCGGGAGGCTAGGGTCGCAGGGATCGCGC  150

seq1  TGCGCCCTGGGCACCTGTTAGGCTTCCGCGCTTGGTGCCCGATACCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCCTGGGCACCTGTTAGGCTTCCGCGCTTGGTGCCCGATACCCAGT  200

seq1  GCCCTCCGGCTGCGCCCACACCTGGGAAAAGTTTCTGGTACCCTAAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCGGCTGCGCCCACACCTGGGAAAAGTTTCTGGTACCCTAAAGCC  250

seq1  GGACGCAGCCGGACCAGCAGTGCCCGACACAGAAGCCCTTTGTTCCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCAGCCGGACCAGCAGTGCCCGACACAGAAGCCCTTTGTTCCCTGC  300

seq1  TCTAGGGAGAGGCTGCTTGGCCACCTTGGGCCTTTTTTGGGGAACGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGAGAGGCTGCTTGGCCACCTTGGGCCTTTTTTGGGGAACGCTCC  350

seq1  TCTATTCCCATTTCCAGCGCAGGGTTTCAGGTTCTTTGCTCCCATCCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCCATTTCCAGCGCAGGGTTTCAGGTTCTTTGCTCCCATCCTCG  400

seq1  GAGAGGTCAACTTCAGCTCCAGAGTCTGTGACGGCTTCGAGCCGGGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTCAACTTCAGCTCCAGAGTCTGTGACGGCTTCGAGCCGGGGACC  450

seq1  CCTGCGAGCTCTGCGGCCCAGGAGTGATGGGTCTCCCTGCGCGGACCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGAGCTCTGCGGCCCAGGAGTGATGGGTCTCCCTGCGCGGACCTCT  500

seq1  CCAACTTGTTCCGGAAGTAGCCCGGCGGGGGCAGCTGTGGCTTCTGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTGTTCCGGAAGTAGCCCGGCGGGGGCAGCTGTGGCTTCTGAGCC  550

seq1  AACATGTAGAGCAGATCCAGGGACCCCAAGCTGCTTAGGCACCGGTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTAGAGCAGATCCAGGGACCCCAAGCTGCTTAGGCACCGGTGACC  600

seq1  ATCCCATCTTGGGAGGCCTGGCAGTGCCCACTACTTGCCACAGAGCAGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATCTTGGGAGGCCTGGCAGTGCCCACTACTTGCCACAGAGCAGCG  650

seq1  CTGTAGAGGGATGTGGAGAATGGTCTCTTTGAGGTACAAAAGGTCTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGGGATGTGGAGAATGGTCTCTTTGAGGTACAAAAGGTCTTTGG  700

seq1  TGGCCACTTCTGGGCTACCTGTGTGGTGCCTGTTGACAGTATGATCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTTCTGGGCTACCTGTGTGGTGCCTGTTGACAGTATGATCAGCT  750

seq1  CCTTTGCCCTTAACCTGGGTAAGTTATCCACCTGGATAACTGCATAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCCTTAACCTGGGTAAGTTATCCACCTGGATAACTGCATAGTCA  800

seq1  TTGTATTGATTGGCTAAGCAGCGAGCTCTCCAGACCCTGGGGAAGAGGGA  850
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  TTGTATTGA-TGGCT-AGCAGCGAGCTCTCCAGACCCTGGGGAAGAGGGA  848

seq1  CTGCGAGAAGGAAGCAGTTTGGGTTGAAAATTGAAGCAGGCTTGGAAGAG  900
      |||||||||||||||||||||||||| ||||||||||| |||||| ||||
seq2  CTGCGAGAAGGAAGCAGTTTGGGTTG-AAATTGAAGCAAGCTTGG-AGAG  896

seq1  GCTGTGTGAGTCCAGAGACCACGGCTGTCCACAGCTTGGGAAAGC-CTC-  948
      |||||||||||||||||||||||||||||||||||||||| |||| ||| 
seq2  GCTGTGTGAGTCCAGAGACCACGGCTGTCCACAGCTTGGGGAAGCTCTCA  946

seq1  ACTT-ACATCATTTTCTTTACCT---CCCCAACAGAATTTAGAG-TTTCG  993
      |||| ||||||||||||||||||   ||| |||||||||||||| |||||
seq2  ACTTAACATCATTTTCTTTACCTTCCCCCAAACAGAATTTAGAGTTTTCG  996

seq1  TG-TTTTCAGC-TCTAT-AGGCTTTGTGCGTCCAGCT--GGACTCA-CAA  1037
      || |||||||| ||||| |||||||||||||||||||  | ||||| |||
seq2  TGTTTTTCAGCTTCTATAAGGCTTTGTGCGTCCAGCTTGGAACTCACCAA  1046

seq1  AAGGTAG-CTGGA--GAACGA--GACACACAT-GTGTA-GCAGTAGTGAA  1080
      | ||||| |||||   |||||  ||||||||| ||||| |||||||||| 
seq2  AGGGTAGCCTGGAAGAAACGAAGGACACACATGGTGTAGGCAGTAGTGAC  1096

seq1  CCGA-TGA-CTACA-TTTCTTTT-GCTCAGAATTTTAAGA-TCAAGGTAG  1125
      | || ||| ||||| |||||||| |||||||  ||||||| |||||||||
seq2  CGGATTGACCTACATTTTCTTTTGGCTCAGA--TTTAAGATTCAAGGTAG  1144

seq1  ACATTTTAAAATACTTGTGCCAGAGATTGG  1155
      |||  |||||||||||  | | ||||||||
seq2  ACA--TTAAAATACTTTGGTCCGAGATTGG  1172