BAC Information

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BAC

Clone NameB6Ng01-256E12
Chromosome12 (Build37)
Map Location 10,147,276 - 10,285,402
singlet/doubletdoublet
Overlap geneLOC382567
Upstream geneLOC633030, LOC100042238, Osr1
Downstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256E12.bB6Ng01-256E12.g
ACCGA062280GA062281
length1,1491,152
definitionB6Ng01-256E12.b B6Ng01-256E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,284,297 - 10,285,402)(10,147,276 - 10,148,429)
sequence
gaattcaacagcacctttggggttccttcttgcacaatgtcatgttaagg
cttttctttttctgaaaatttttgtcctttctttcaattttacttaaaaa
aaaacccaaaaagtcctttgcatatatattatgacttttggttttgcatt
tttatgggatttctgagtgtgcaaatgagtctatatctgttccttgtgta
ttttcttggatatcttcctttcttctctttctttctttctttctttcttt
ctttctttctttctttctttctttctttctttctttctttctttctttct
ttctttctgtgggtttttctattcagatatatttgttttttttgttttgt
attttattatctcctattgctatattataactatgcattaggaacttctt
tgttttctaatgagaggcaggaagtgaatagctctggatgggagcagata
tggaaaagaaccgggagaattagaagaaggggaagctggcatcattatgt
agtatatgaaagaatctattttcaataaaagaaaaaaaagattaaaacta
aaaatggcttcaaaattagcgatagctgggcttcttatcttaatgtgttc
aagtcgaggattgaagaaagcaactgtacatcccagaggaagtatagaca
gcaaagaatgtcctgtggactgggaaacaaactaacaaaatcttacattt
acaaagtgaaaaataaatatataagtatatatgttcacacacacacacac
acacacacacatacacacacacacacacacacacatatctccaaagtcat
ggggtatgaggtggattgcagggctgggaaaagtagcagcaaagagcatg
tgtctaaaagaagtttcttggcagttcttgaaaactgccttgactgatgt
gggaagaaaaactctgccatctttttctcttgaagtggatcaaaagaaaa
atcagaaggaggtaagaatttcactatgaagaagaagcaacaaaaacata
gatgttgacagggggtggaggtgccagagtgttgtttcgctttctttgtt
ttctgtgactttagagtagaagacagttttgaacatgttatatgggtgaa
tagagggggtccagaacaccactggccatataatttgcttctgataaag

gaattctcagagcatctctctaggttctctggctccaggactgaacctac
atagagaaaatgaacactggggaaaagaaatctcaagcacaacttacagg
aaggagcgcttcctccttctcaatcccattcaccgaggtctggaacgttt
gtgaatgttgattaggctgggatcattaccagttcctttaatacatatga
taattttaaatgataaaattgtggtgaagagtttttttccctcaagtggc
ttgctcagaagttgcaaaaccaattgtctccaatttctagttatattggc
ttattctagctcccatgtagtagagtgcaattttaaaacaatgtcagagg
gtataagaatcttaaattgtataaagcattgtaggtatatgtacctgcct
tacatacgtcagcacagtgggtctctgcaattctcacaaacatcttacga
agtaagtatttctttttattggatattttatttattttacatttcaaatg
ttaacccctttactggtttcccctccagaaatcccctaattccatccctc
tccccttgcttctatgagggtgctcacccagctacccactcccaccttac
tgccctggcattcccctatacgggggcatcaagccttcatgagaccaagg
gtctcccctcccactgatgctttacaaggccatcctctgctacatatgtg
gctggagccatgggtccccccatgtgtactccttggtttgtggtttagtc
cctgggagctctgggggggctggttgattaatattgttgttcttcctatg
gggttgcaaaacccttcagctccttcagtcctttctctaactcctccatt
ggggtccccatgctcagtccaatggtttctaatttcacactttattaaat
aaactgctactacatgaatattttacccaaagtctaacatctaagagatg
atgaaatactacttgcatttctatctgacactctctcattctctgtttgt
ctctgtgggacagaaaacaacttgtgtattctattttagcagagacaatg
tagatggcatcatagctgaagatacagagacagatagcaaagtatgaacc
taatagctttaaaagagaggcccaccctaaagatgggccaggttggtaat
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10284297_10285402
seq2: B6Ng01-256E12.b_78_1193 (reverse)

seq1  CTTTATCAAGAAGCAAAATTATAT-GCCAGT-GTGTTCTGG-GCCCCTCT  47
      ||||||| |||||| ||||||||| |||||| |||||||||  |||||||
seq2  CTTTATC-AGAAGC-AAATTATATGGCCAGTGGTGTTCTGGACCCCCTCT  48

seq1  ATTCA-CCATATAACATGT--CAAACTGTCTTCTACTCTAAAGTCACAGA  94
      ||||| |||||||||||||   ||||||||||||||||||||||||||||
seq2  ATTCACCCATATAACATGTTCAAAACTGTCTTCTACTCTAAAGTCACAGA  98

seq1  AAACAAAG-AAGCGAAACACCACCTCTGGGCCACCTCCA-CCCCTGTCAA  142
      |||||||| |||||||||| || ||||||  |||||||| ||||||||||
seq2  AAACAAAGAAAGCGAAACAACA-CTCTGG--CACCTCCACCCCCTGTCAA  145

seq1  CATCTATG-TTTTGTTGCTTC-TCTTCATAGTGAAATTCTTACCT-CTTC  189
      |||||||| |||||||||||| ||||||||||||||||||||||| ||||
seq2  CATCTATGTTTTTGTTGCTTCTTCTTCATAGTGAAATTCTTACCTCCTTC  195

seq1  TGATTTTTCTTTTGATCCACTTCAAGAGAAAAAGATGGCAGAGTTTTTCT  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTCTTTTGATCCACTTCAAGAGAAAAAGATGGCAGAGTTTTTCT  245

seq1  TCCCACATCAGTCAAGGCAGTTTTCAAG-ACTGCCAAGAAACTTCTTTTA  288
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCCACATCAGTCAAGGCAGTTTTCAAGAACTGCCAAGAAACTTCTTTTA  295

seq1  GACACATGCTCTTTGCCTGCTACTTTTCCCAGCCCTGCAATCCACCTCAT  338
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GACACATGCTCTTTG-CTGCTACTTTTCCCAGCCCTGCAATCCACCTCAT  344

seq1  ACCCCATGACTTTGGAGATATGTGTGTGTGTGTGTGTGTGTGTATGTGTG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATGACTTTGGAGATATGTGTGTGTGTGTGTGTGTGTGTATGTGTG  394

seq1  TGTGTGTGTGTGTGTGTGTGAACATATATACTTATATATTTATTTTTCAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGAACATATATACTTATATATTTATTTTTCAC  444

seq1  TTTGTAAATGTAAGATTTTGTTAGTTTGTTTCCCAGTCCACAGGACATTC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAATGTAAGATTTTGTTAGTTTGTTTCCCAGTCCACAGGACATTC  494

seq1  TTTGCTGTCTATACTTCCTCTGGGATGTACAGTTGCTTTCTTCAATCCTC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTCTATACTTCCTCTGGGATGTACAGTTGCTTTCTTCAATCCTC  544

seq1  GACTTGAACACATTAAGATAAGAAGCCCAGCTATCGCTAATTTTGAAGCC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAACACATTAAGATAAGAAGCCCAGCTATCGCTAATTTTGAAGCC  594

seq1  ATTTTTAGTTTTAATCTTTTTTTTCTTTTATTGAAAATAGATTCTTTCAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGTTTTAATCTTTTTTTTCTTTTATTGAAAATAGATTCTTTCAT  644

seq1  ATACTACATAATGATGCCAGCTTCCCCTTCTTCTAATTCTCCCGGTTCTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACATAATGATGCCAGCTTCCCCTTCTTCTAATTCTCCCGGTTCTT  694

seq1  TTCCATATCTGCTCCCATCCAGAGCTATTCACTTCCTGCCTCTCATTAGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATCTGCTCCCATCCAGAGCTATTCACTTCCTGCCTCTCATTAGA  744

seq1  AAACAAAGAAGTTCCTAATGCATAGTTATAATATAGCAATAGGAGATAAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAAGTTCCTAATGCATAGTTATAATATAGCAATAGGAGATAAT  794

seq1  AAAATACAAAACAAAAAAAACAAATATATCTGAATAGAAAAACCCAC---  835
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  AAAATACAAAACAAAAAAAACAAATATATCTGAATAGAAAAACCCACAGA  844

seq1  -AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  884
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  894

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAGAAAGGAAGATATCCAA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAGAAAGGAAGATATCCAA  944

seq1  GAAAATACACAAGGAACAGATATAGACTCATTTGCACACTCAGAAATCCC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACACAAGGAACAGATATAGACTCATTTGCACACTCAGAAATCCC  994

seq1  ATAAAAATGCAAAACCAAAAGTCATAATATATATGCAAAGGACTTTTTGG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGCAAAACCAAAAGTCATAATATATATGCAAAGGACTTTTTGG  1044

seq1  GTTTTTTTTTAAGTAAAATTGAAAGAAAGGACAAAAATTTTCAGAAAAAG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTAAGTAAAATTGAAAGAAAGGACAAAAATTTTCAGAAAAAG  1094

seq1  AAAAGCCTTAACATGACATTGT  1106
      ||||||||||||||||||||||
seq2  AAAAGCCTTAACATGACATTGT  1116


seq1: chr12_10147276_10148429
seq2: B6Ng01-256E12.g_64_1215

seq1  GAATTCTCAGAGCATCTCTCTAGGTTCTCTGGCTCCAGGACTGAACCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAGCATCTCTCTAGGTTCTCTGGCTCCAGGACTGAACCTAC  50

seq1  ATAGAGAAAATGAACACTGGGGAAAAGAAATCTCAAGCACAACTTACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAAATGAACACTGGGGAAAAGAAATCTCAAGCACAACTTACAGG  100

seq1  AAGGAGCGCTTCCTCCTTCTCAATCCCATTCACCGAGGTCTGGAACGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCGCTTCCTCCTTCTCAATCCCATTCACCGAGGTCTGGAACGTTT  150

seq1  GTGAATGTTGATTAGGCTGGGATCATTACCAGTTCCTTTAATACATATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTTGATTAGGCTGGGATCATTACCAGTTCCTTTAATACATATGA  200

seq1  TAATTTTAAATGATAAAATTGTGGTGAAGAGTTTTTTTCCCTCAAGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAAATGATAAAATTGTGGTGAAGAGTTTTTTTCCCTCAAGTGGC  250

seq1  TTGCTCAGAAGTTGCAAAACCAATTGTCTCCAATTTCTAGTTATATTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGAAGTTGCAAAACCAATTGTCTCCAATTTCTAGTTATATTGGC  300

seq1  TTATTCTAGCTCCCATGTAGTAGAGTGCAATTTTAAAACAATGTCAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAGCTCCCATGTAGTAGAGTGCAATTTTAAAACAATGTCAGAGG  350

seq1  GTATAAGAATCTTAAATTGTATAAAGCATTGTAGGTATATGTACCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGAATCTTAAATTGTATAAAGCATTGTAGGTATATGTACCTGCCT  400

seq1  TACATACGTCAGCACAGTGGGTCTCTGCAATTCTCACAAACATCTTACGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACGTCAGCACAGTGGGTCTCTGCAATTCTCACAAACATCTTACGA  450

seq1  AGTAAGTATTTCTTTTTATTGGATATTTTATTTATTTTACATTTCAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTATTTCTTTTTATTGGATATTTTATTTATTTTACATTTCAAATG  500

seq1  TTAACCCCTTTACTGGTTTCCCCTCCAGAAATCCCCTAATTCCATCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCCTTTACTGGTTTCCCCTCCAGAAATCCCCTAATTCCATCCCTC  550

seq1  TCCCCTTGCTTCTATGAGGGTGCTCACCCAGCTACCCACTCCCACCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTGCTTCTATGAGGGTGCTCACCCAGCTACCCACTCCCACCTTAC  600

seq1  TGCCCTGGCATTCCCCTATACGGGGGCATCAAGCCTTCATGAGACCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGGCATTCCCCTATACGGGGGCATCAAGCCTTCATGAGACCAAGG  650

seq1  GTCTCCCCTCCCACTGATGCTTTACAAGGCCATCCTCTGCTACATATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCCTCCCACTGATGCTTTACAAGGCCATCCTCTGCTACATATGTG  700

seq1  GCTGGAGCCATGGGTCCCCCCATGTGTACTCCTTGGTTTGTGGTTTAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGCCATGGGTCCCCCCATGTGTACTCCTTGGTTTGTGGTTTAGTC  750

seq1  CCTGGGAGCTCT-GGGGGGCTGGTTGATTAATATTGTTGTTCTTCCTATG  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGCTCTGGGGGGGCTGGTTGATTAATATTGTTGTTCTTCCTATG  800

seq1  GGGTTGCAAAACCCTTCAGCTCCTTCAGTCCTTTCTCTAACTCCTCCATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCAAAACCCTTCAGCTCCTTCAGTCCTTTCTCTAACTCCTCCATT  850

seq1  GGGGTCCCCATGCTCAGTCCAATGGTTTCTAATTTCACACTTTATTAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCCCATGCTCAGTCCAATGGTTTCTAATTTCACACTTTATTAAAT  900

seq1  AAACTGCTACTACATGAATATTTTACCCAAAGTCTAACATCTAAGAGATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTACTACATGAATATTTTACCCAAAGTCTAACATCTAAGAGATG  950

seq1  ATGAAATACTACTTGCATTTCTATCTGACACTCTCTCATTCTCTTGTTTG  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGAAATACTACTTGCATTTCTATCTGACACTCTCTCATTCTC-TGTTTG  999

seq1  TCTCTGTTGGACAG-AAACAAC-TGTGTATTCTATTTTAAGCAGAGAC-A  1046
      ||||||| |||||| ||||||| ||||||||||||||| ||||||||| |
seq2  TCTCTGTGGGACAGAAAACAACTTGTGTATTCTATTTT-AGCAGAGACAA  1048

seq1  TGGAGATGGGCATCATAGCCTGAAGGATACAGAGACAGGATAGCAAAGTA  1096
      || |||| |||||||||| ||||| |||||||||||| ||||||||||||
seq2  TGTAGAT-GGCATCATAG-CTGAA-GATACAGAGACA-GATAGCAAAGTA  1094

seq1  TGAACC-AATAGCCTTTAAAAAGAAGAGGCCCA-CCTAAAGATGGG-CAG  1143
      |||||| ||||| ||||||||   ||||||||| |||||||||||| |||
seq2  TGAACCTAATAG-CTTTAAAA--GAGAGGCCCACCCTAAAGATGGGCCAG  1141

seq1  GTTGGTAATCC  1154
      |||||||||||
seq2  GTTGGTAATCC  1152


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