BAC Information

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BAC

Clone NameB6Ng01-258C09
Chromosome12 (Build37)
Map Location 120,409,089 - 120,550,304
singlet/doubletdoublet
Overlap geneItgb8, EG627557
Upstream geneDnahc11, Sp4, LOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5
Downstream geneLOC100043011, 4732474O15Rik, LOC668632, LOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258C09.bB6Ng01-258C09.g
ACCGA063661GA063662
length1,1431,110
definitionB6Ng01-258C09.b B6Ng01-258C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,409,089 - 120,410,237)(120,549,181 - 120,550,304)
sequence
gaattctaactgcctgtgtatatcaactcaccagcacacacatccccatg
gagatagggacaggagaagtcatccttctcacagtactggccatacactc
ttcctagcttggttttgtgacataaacatttcccacagatgcaaacacct
cggccactgcagacaggttgatcctcctgtggcttgcaagtttcagaagg
aaactggtcttcatcaaaatgacatctgctgtcatcacactgtggacact
tggggtctggggcagcttccgcacactgtcctttgagtcctctgtggttc
tcacactggcaactgcagcttctgtgtatgtggactttagtggtttcatt
gaaaccaataggcttgattattgcatagttttttcctcccatgatatcac
atgttttcatcacaacagttacattgaaaagaacctaaatttcaaaggaa
aatagaaatatctttatatccttggatactgtaaacagtatatcaagtaa
tgatatttaaatcaatggtgaacatcttagagataccaacaatatttata
aatcacatgtgcatgcaatctaatatgtaagtacataattgccacttaat
tccatttttgcctaactgattaattagaattaaaggaagtaacaattgct
aatggcctgtaaatcaccatgtgtccatttgtcctcaggtgtctgtcacc
ttaggtaactgatttcatggacaactgctgaatcaatgttctattttctg
aattggacatatgaggttagtgaacaattggcattaggaaccaataaacc
taagtaaatggtttcttatcttctgggtcagaaccctgatttagtcatat
gggcaattttatttatttgtattttactttttagaggctcaaggtaaaga
ccaagagatgatctttagtatatacatatacagtttttcagtggaggaaa
acacaaccccatctctgatgttacttgagaagagctcagacttattcttc
cagcttcaagaacctcacaccaaagtcacttgttactggtgggtcatccc
agaactaagaatggactagtagccaggagtgattggttggttgttggttt
ggttggttttcctctagaacaaccagtaattgctgaaaatttt

gaattcaagattgatgaagaatcagacaatctcatctatcaggaaacaaa
gccacagaaagcagtatatcccaacacatctcgtaaaagacttctcatta
aatacaacacaaatattggagagcaagcagagagatgcccttacctacat
ttttcaattccaacttaaattcaatcttttatacagttaaagtcctcaag
aggacctagctgaactgagaactaaaacccagatatgatcttctgtatgc
aaccttggcacaggaacaaagctgttacactgtacttattaatatgcatg
ctctaagacttattcttataaataaacatctttgttcaaaaatagccaag
aatttttttttaaagcaaaagatgtttaaacacagggtggtggaatctta
gggaaaacccaaagaatgaagctaatttattccaggaaagggacaaagtc
aaatcatgaggcaaactcattaatagtgaacgtgaagtgctgttggtggt
tttgcacatactttgattgtgagcaatacagtcaggattcatgaatattg
gtgtaaaattttctccaggtattcttatatttgctttaagagggaaaatt
tttactttgcaagatttctagaaaatccccataatttgtatgtctcaaaa
tatttaattttctaattaactttaacagtatatataattgaaatataatc
ctcacatcttcataattgaattatttgatgttagtaaaattgaaggacca
taagagagaaagggagactatgagttatagattgtttaattgcatagatc
atttttgttagtagtgcaaattacatagatttcctttttaaataagactg
cctctttgacattaaccttataaaatttattcaactttgtattttttaag
tgtttggctttatttaattatatattagttgcctttgtcacctgatcagt
cagagcccttagcagatgatgggatactggaagcagtaatctaagtcact
gctcttaccaaactgacaaaaagaaagaaaattgataaataatataagtt
tctcaaaatcatcacacaaaaatagaatacaggtgtctctttgtgatgcc
ttataaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_120409089_120410237
seq2: B6Ng01-258C09.b_49_1191

seq1  GAATTCTAACTGCCTGTGTATATCAACTCACCAGCACACACATCCCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACTGCCTGTGTATATCAACTCACCAGCACACACATCCCCATG  50

seq1  GAGATAGGGACAGGAGAAGTCATCCTTCTCACAGTACTGGCCATACACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGGGACAGGAGAAGTCATCCTTCTCACAGTACTGGCCATACACTC  100

seq1  TTCCTAGCTTGGTTTTGTGACATAAACATTTCCCACAGATGCAAACACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCTTGGTTTTGTGACATAAACATTTCCCACAGATGCAAACACCT  150

seq1  CGGCCACTGCAGACAGGTTGATCCTCCTGTGGCTTGCAAGTTTCAGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCACTGCAGACAGGTTGATCCTCCTGTGGCTTGCAAGTTTCAGAAGG  200

seq1  AAACTGGTCTTCATCAAAATGACATCTGCTGTCATCACACTGTGGACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTCTTCATCAAAATGACATCTGCTGTCATCACACTGTGGACACT  250

seq1  TGGGGTCTGGGGCAGCTTCCGCACACTGTCCTTTGAGTCCTCTGTGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCTGGGGCAGCTTCCGCACACTGTCCTTTGAGTCCTCTGTGGTTC  300

seq1  TCACACTGGCAACTGCAGCTTCTGTGTATGTGGACTTTAGTGGTTTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGGCAACTGCAGCTTCTGTGTATGTGGACTTTAGTGGTTTCATT  350

seq1  GAAACCAATAGGCTTGATTATTGCATAGTTTTTTCCTCCCATGATATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAATAGGCTTGATTATTGCATAGTTTTTTCCTCCCATGATATCAC  400

seq1  ATGTTTTCATCACAACAGTTACATTGAAAAGAACCTAAATTTCAAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCATCACAACAGTTACATTGAAAAGAACCTAAATTTCAAAGGAA  450

seq1  AATAGAAATATCTTTATATCCTTGGATACTGTAAACAGTATATCAAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATATCTTTATATCCTTGGATACTGTAAACAGTATATCAAGTAA  500

seq1  TGATATTTAAATCAATGGTGAACATCTTAGAGATACCAACAATATTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTAAATCAATGGTGAACATCTTAGAGATACCAACAATATTTATA  550

seq1  AATCACATGTGCATGCAATCTAATATGTAAGTACATAATTGCCACTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATGTGCATGCAATCTAATATGTAAGTACATAATTGCCACTTAAT  600

seq1  TCCATTTTTGCCTAACTGATTAATTAGAATTAAAGGAAGTAACAATTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTTGCCTAACTGATTAATTAGAATTAAAGGAAGTAACAATTGCT  650

seq1  AATGGCCTGTAAATCACCATGTGTCCATTTGTCCTCAGGTGTCTGTCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCTGTAAATCACCATGTGTCCATTTGTCCTCAGGTGTCTGTCACC  700

seq1  TTAGGTAACTGATTTCATGGACAACTGCTGAATCAATGTTCTATTTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAACTGATTTCATGGACAACTGCTGAATCAATGTTCTATTTTCTG  750

seq1  AATTGGACATATGAGGTTAGTGAACAATTGGCATTAGGAACCAATAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGACATATGAGGTTAGTGAACAATTGGCATTAGGAACCAATAAACC  800

seq1  TAAGTAAATGGTTTCTTATCTTCTGGGTCAGAACCCTGATTTAGTCATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAATGGTTTCTTATCTTCTGGGTCAGAACCCTGATTTAGTCATAT  850

seq1  GGGCAATTTTATTTATTTGTATTTTACTTTTTAGAGGCTCAAGGTAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATTTTATTTATTTGTATTTTACTTTTTAGAGGCTCAAGGTAAAGA  900

seq1  CCAAGAGATGATCTTTAGTATATACATATACAGTTTTTCAGTGGAGGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGATGATCTTTAGTATATACATATACAGTTTTTCAGTGGAGGAAA  950

seq1  ACACAACCCCATCTCTGATGTTACTTGAGAAAGAGGCTCAGGACTTATTC  1000
      ||||||||||||||||||||||||||||| |||| ||||| |||||||||
seq2  ACACAACCCCATCTCTGATGTTACTTGAG-AAGA-GCTCA-GACTTATTC  997

seq1  -TCCAGCTTCAAG-ACCTCACACCAAAGTCACTTGTTACTGTGGGGTCAT  1048
       |||||||||||| |||||||||||||||||||||||||||  |||||||
seq2  TTCCAGCTTCAAGAACCTCACACCAAAGTCACTTGTTACTGGTGGGTCAT  1047

seq1  CCCAGAACTAAAGAATGGACTAGTAGCAAGGAGTGGTTTGTTTGTTTGTT  1098
      ||||||||| ||||||||||||||||| |||||| | ||| ||| |||||
seq2  CCCAGAACT-AAGAATGGACTAGTAGCCAGGAGT-GATTGGTTGGTTGTT  1095

seq1  TGTTTGTTTGTTTTTCCCTCTAGAACAA-CAGTTTATTTGCCTGAAAATT  1147
       ||||| ||| |||| |||||||||||| |||  || ||| |||||||||
seq2  GGTTTGGTTGGTTTT-CCTCTAGAACAACCAG--TAATTG-CTGAAAATT  1141

seq1  TT  1149
      ||
seq2  TT  1143


seq1: chr12_120549181_120550304
seq2: B6Ng01-258C09.g_68_1177 (reverse)

seq1  ATGTTTATAGGGCCAATCCACAAAGAGACCAACTGTA-TCTTATTTTGTG  49
      ||||||||| |||  || |||||||||| || ||||| |||  |||||||
seq2  ATGTTTATAAGGC--AT-CACAAAGAGA-CACCTGTATTCTATTTTTGTG  46

seq1  TGATGAATTTTGAGAAACTTTAATATTATTTAATCAATTTTCTTTCTTTT  99
      ||||| ||||||||||||||  ||||||||| ||||||||||||||||||
seq2  TGATG-ATTTTGAGAAACTT--ATATTATTT-ATCAATTTTCTTTCTTTT  92

seq1  TTGGTCAGTTTGGTAAGGAGCAGTGACTTAGATTACCTGCTTCCAGTTAT  149
      |  ||||||||||||| |||||||||||||||||| |||||||||| |||
seq2  T--GTCAGTTTGGTAA-GAGCAGTGACTTAGATTA-CTGCTTCCAG-TAT  137

seq1  CCCATCATCTGCTAAGGGCTCTTGACTTGATCAGGTGACAAAGGCAACTA  199
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  CCCATCATCTGCTAAGGGCTC-TGAC-TGATCAGGTGACAAAGGCAACTA  185

seq1  ATATATAATTAAATAAAGCCAAACACTTAAAAAATACAAAGTTGAATAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATTAAATAAAGCCAAACACTTAAAAAATACAAAGTTGAATAAA  235

seq1  TTTTATAAGGTTAATGTCAAAGAGGCAGTCTTATTTAAAAAGGAAATCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGGTTAATGTCAAAGAGGCAGTCTTATTTAAAAAGGAAATCTA  285

seq1  TGTAATTTGCACTACTAACAAAAATGATCTATGCAATTAAACAATCTATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTGCACTACTAACAAAAATGATCTATGCAATTAAACAATCTATA  335

seq1  ACTCATAGTCTCCCTTTCTCTCTTATGGTCCTTCAATTTTACTAACATCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAGTCTCCCTTTCTCTCTTATGGTCCTTCAATTTTACTAACATCA  385

seq1  AATAATTCAATTATGAAGATGTGAGGATTATATTTCAATTATATATACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCAATTATGAAGATGTGAGGATTATATTTCAATTATATATACTG  435

seq1  TTAAAGTTAATTAGAAAATTAAATATTTTGAGACATACAAATTATGGGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTAATTAGAAAATTAAATATTTTGAGACATACAAATTATGGGGA  485

seq1  TTTTCTAGAAATCTTGCAAAGTAAAAATTTTCCCTCTTAAAGCAAATATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGAAATCTTGCAAAGTAAAAATTTTCCCTCTTAAAGCAAATATA  535

seq1  AGAATACCTGGAGAAAATTTTACACCAATATTCATGAATCCTGACTGTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACCTGGAGAAAATTTTACACCAATATTCATGAATCCTGACTGTAT  585

seq1  TGCTCACAATCAAAGTATGTGCAAAACCACCAACAGCACTTCACGTTCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACAATCAAAGTATGTGCAAAACCACCAACAGCACTTCACGTTCAC  635

seq1  TATTAATGAGTTTGCCTCATGATTTGACTTTGTCCCTTTCCTGGAATAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGAGTTTGCCTCATGATTTGACTTTGTCCCTTTCCTGGAATAAA  685

seq1  TTAGCTTCATTCTTTGGGTTTTCCCTAAGATTCCACCACCCTGTGTTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTCATTCTTTGGGTTTTCCCTAAGATTCCACCACCCTGTGTTTAA  735

seq1  ACATCTTTTGCTTTAAAAAAAAATTCTTGGCTATTTTTGAACAAAGATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTTGCTTTAAAAAAAAATTCTTGGCTATTTTTGAACAAAGATGT  785

seq1  TTATTTATAAGAATAAGTCTTAGAGCATGCATATTAATAAGTACAGTGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATAAGAATAAGTCTTAGAGCATGCATATTAATAAGTACAGTGTA  835

seq1  ACAGCTTTGTTCCTGTGCCAAGGTTGCATACAGAAGATCATATCTGGGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTGTTCCTGTGCCAAGGTTGCATACAGAAGATCATATCTGGGTT  885

seq1  TTAGTTCTCAGTTCAGCTAGGTCCTCTTGAGGACTTTAACTGTATAAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTCAGTTCAGCTAGGTCCTCTTGAGGACTTTAACTGTATAAAAG  935

seq1  ATTGAATTTAAGTTGGAATTGAAAAATGTAGGTAAGGGCATCTCTCTGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTTAAGTTGGAATTGAAAAATGTAGGTAAGGGCATCTCTCTGCT  985

seq1  TGCTCTCCAATATTTGTGTTGTATTTAATGAGAAGTCTTTTACGAGATGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCAATATTTGTGTTGTATTTAATGAGAAGTCTTTTACGAGATGT  1035

seq1  GTTGGGATATACTGCTTTCTGTGGCTTTGTTTCCTGATAGATGAGATTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGATATACTGCTTTCTGTGGCTTTGTTTCCTGATAGATGAGATTGT  1085

seq1  CTGATTCTTCATCAATCTTGAATTC  1124
      |||||||||||||||||||||||||
seq2  CTGATTCTTCATCAATCTTGAATTC  1110


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