BAC Information

Click to search

BAC

Clone NameB6Ng01-259G02
Chromosome12 (Build37)
Map Location 52,810,924 - 52,889,705
singlet/doubletdoublet
Overlap geneAp4s1, Hectd1
Upstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3
Downstream geneEG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5, Akap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259G02.bB6Ng01-259G02.g
ACCGA064574GA064575
length671365
definitionB6Ng01-259G02.b B6Ng01-259G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,889,035 - 52,889,705)(52,810,924 - 52,811,294)
sequence
gaattcatctcagtttttaaagatcaatctagagccattaagatggttca
gtgagtaaaggacccagatttagtccttatcctctgtagctatgtgatta
tcatcattattattattatttagcctctgtgtgcttcttttgaaaaagca
taaggttagatattacattcaactcagaatatattgaaatatttcagaca
gaaatatcttactcactggaagttctgtcatacacctttaatcccagtac
ttgggaggtagaaaagggaagagttctgagtttaaagccagcctcctcga
cgtaagagttccaggacagcctttttaggggagagttggtgttcatttgt
atttctaattagttaactgtgaataagctccttttatttttttaaaagaa
aggacactctaggacattctaaagagttattttagtaaacatttaaaatc
tactagagtgtctttctagcacttagaatgtgtaagtgagaataacaatg
gtgtggaagctgatatgggacaaaatggtcctttttttgttatgtcgtgt
ggaggagaggtttcgccttggcagtcttcgtgttaggcaggcttctgact
atgtccccacagcctcacagtctcatttcctgacagtctgagcaagtgcc
tgggaggaggggggaggggaa
tcccacgcagtctgcctacttcagaagagctgagcttattgtagaggcct
tctttttttttttttttcagtttgcatcgcaagttttattcctgatgcag
aatagatcggtccatccctcaaatgtattacatgttgccatggagggcct
aggatgctgctcccatctccagagaggagagacagttctgaagttcctgg
gtctcttaccctccctctcaacagaggaattatctctcatccattcagtt
aaaaaaaaaaaagcaatcattaacaaaacaaaacagactgtaagtactgg
gcagaggcatccttgacctcagctggacatcacgttatgggttgatgggg
aaatgagggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_52889035_52889705
seq2: B6Ng01-259G02.b_44_714 (reverse)

seq1  TTCCCCTCCCCCCTCCTCCCAGGCACTTGCTCAGACTGTCAGGAAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCCCCCCTCCTCCCAGGCACTTGCTCAGACTGTCAGGAAATGAG  50

seq1  ACTGTGAGGCTGTGGGGACATAGTCAGAAGCCTGCCTAACACGAAGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGGCTGTGGGGACATAGTCAGAAGCCTGCCTAACACGAAGACTG  100

seq1  CCAAGGCGAAACCTCTCCTCCACACGACATAACAAAAAAAGGACCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCGAAACCTCTCCTCCACACGACATAACAAAAAAAGGACCATTTT  150

seq1  GTCCCATATCAGCTTCCACACCATTGTTATTCTCACTTACACATTCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATATCAGCTTCCACACCATTGTTATTCTCACTTACACATTCTAAG  200

seq1  TGCTAGAAAGACACTCTAGTAGATTTTAAATGTTTACTAAAATAACTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAAAGACACTCTAGTAGATTTTAAATGTTTACTAAAATAACTCTT  250

seq1  TAGAATGTCCTAGAGTGTCCTTTCTTTTAAAAAAATAAAAGGAGCTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTCCTAGAGTGTCCTTTCTTTTAAAAAAATAAAAGGAGCTTATT  300

seq1  CACAGTTAACTAATTAGAAATACAAATGAACACCAACTCTCCCCTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTAACTAATTAGAAATACAAATGAACACCAACTCTCCCCTAAAAA  350

seq1  GGCTGTCCTGGAACTCTTACGTCGAGGAGGCTGGCTTTAAACTCAGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGGAACTCTTACGTCGAGGAGGCTGGCTTTAAACTCAGAACT  400

seq1  CTTCCCTTTTCTACCTCCCAAGTACTGGGATTAAAGGTGTATGACAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTTTCTACCTCCCAAGTACTGGGATTAAAGGTGTATGACAGAAC  450

seq1  TTCCAGTGAGTAAGATATTTCTGTCTGAAATATTTCAATATATTCTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGAGTAAGATATTTCTGTCTGAAATATTTCAATATATTCTGAGT  500

seq1  TGAATGTAATATCTAACCTTATGCTTTTTCAAAAGAAGCACACAGAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTAATATCTAACCTTATGCTTTTTCAAAAGAAGCACACAGAGGCT  550

seq1  AAATAATAATAATAATGATGATAATCACATAGCTACAGAGGATAAGGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAATAATAATGATGATAATCACATAGCTACAGAGGATAAGGACT  600

seq1  AAATCTGGGTCCTTTACTCACTGAACCATCTTAATGGCTCTAGATTGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGGTCCTTTACTCACTGAACCATCTTAATGGCTCTAGATTGATC  650

seq1  TTTAAAAACTGAGATGAATTC  671
      |||||||||||||||||||||
seq2  TTTAAAAACTGAGATGAATTC  671

seq1: chr12_52810924_52811294
seq2: B6Ng01-259G02.g_68_438

seq1  GAATTCTCCCACGCAGTCTGCCTACTTCAGAAGAGCTGAGCTTATTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCACGCAGTCTGCCTACTTCAGAAGAGCTGAGCTTATTGTAG  50

seq1  AGGCCTTCTTTTTTTTTTTTTTTCAGTTTGCATCGCAAGTTTTATTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTCTTTTTTTTTTTTTTTCAGTTTGCATCGCAAGTTTTATTCCTG  100

seq1  ATGCAGAATAGATCGGTCCATCCCTCAAATGTATTACATGTTGCCATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAATAGATCGGTCCATCCCTCAAATGTATTACATGTTGCCATGGA  150

seq1  GGGCCTAGGATGCTGCTCCCATCTCCAGAGAGGAGAGACAGTTCTGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTAGGATGCTGCTCCCATCTCCAGAGAGGAGAGACAGTTCTGAAGT  200

seq1  TCCTGGGTCTCTTACCCTCCCTCTCAACAGAGGAATTATCTCTCATCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGTCTCTTACCCTCCCTCTCAACAGAGGAATTATCTCTCATCCAT  250

seq1  TCAGTTAAAAAAAAAAAAGCAATCATTAACAAAACAAAACAGACTGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAAAAAAAAAAAAGCAATCATTAACAAAACAAAACAGACTGTAAG  300

seq1  TACTGGGCAGAGGCATCCTTGACCTCAGCTGGACATCACGTTATGGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGCAGAGGCATCCTTGACCTCAGCTGGACATCACGTTATGGGTTG  350

seq1  ATGGGGAAATGAGGGGGAGGG  371
      |||||||||||||||||||||
seq2  ATGGGGAAATGAGGGGGAGGG  371