BAC Information

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BAC

Clone NameB6Ng01-259P02
Chromosome12 (Build37)
Map Location 101,713,285 - 101,714,209
singlet/doubletsinglet
Overlap geneTtc7b
Upstream geneLOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1
Downstream geneRps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259P02.bB6Ng01-259P02.g
ACCGA064994GA064995
length1,199931
definitionB6Ng01-259P02.b B6Ng01-259P02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaccatactttcaaagaagagctaataccagcactcctcaaact
attccataaaatagaaacagaaggaacactacttatttcattctatgaag
ccacaattactctgatacctaaaccacacaaagacccaacaaaggaagag
aatttcagaccagttttgcttatgaatattgatgcaaaaatactcaaaat
tctagcaaaccaaattgaagaacacatcaaaaccatcattcaccatgacc
aagtagactttattccagggatggaaggttggttcaatactacaaaaatc
cattaatgcaatctactacataaataaactcaaagaaaaaaaatcatacg
atcatctcattagatgctgaaaaagcatttgataaaatacaacagccctt
caagatatcatttatatgtgataatatgctagaatccaagtttaaaaatt
gtaatctaaagcacttctggtcttaagcattgtaggtacgaaataattaa
ttggtcttcaggtctgactgctttttggaattttccaaaactagtcccga
gtgtcttgtttaggatttttgttgctgtgataaaacattatgcccacaca
atccttggagaagaatgggtttattttatcttacaactctcaggtcatac
tttttccctgagggaagtcaggacaggaatttggaagcagcagttgaagc
agaagccaaaaagaagtgctgcctactgccatgctccccgggctttttcc
gtcggccttccttagacaactcaagaccacctggccagagtgtgcggaac
gtcccagcccatggactaggccctcccacattaatactgaatcaagagac
tagcatacgaacttcctacaggcaatttggtggaagcattttctcaactg
aggctcctcctcccagatactctagtttaagactaaaagtcctaaatttt
tatcataggtatattaactttgtttactcatccactatgtatttaacaga
ttgcttcttagctagatagtaaaatgagaaaaattagggaagctcttact
tcatgacactgtgttgtagctaataaatttttcttagaatataggatcat
agttataaaaatagattagatgattttgagaactacctccatgattttgt
gttggtgtgcatgcaatgaaaatttttctgcgccacatgggttgctctc
gaattcagtgtccaactccagagaggcaataaaaatgtttcaaatggaat
ctcatgaatcaaagtccgagctgattttctctcacatcaagagctgcccc
accttgggcaatcccaggaccgccaggcctcctagtccttgtgtggttta
tgaactattgagacactaacttgtgttacagagaggaacagccaaacaga
tattttgatcctgtttgtttttgttttaggttttttgtttttttcgagac
agggtttctctgtgtagtcctggctgtcctggaactcactctgtacacca
ggctggccttgaactcagaaatccacctgagtctgcctcccgagtgctgg
gattaaaggcgagcaccaccactgccgggtgacattttgattcttaaaag
tcacatggaaatgaacagaataacaactttttacagttatagaagtgaca
aagctgtcagggttataatgaacaggtcacagttatatgaagtgataaag
ctgtcagtgcgacaaaaggtcctatgaactacaacactgccattgtttcc
catttatcttaaccacagctccggaagtcagacacaggacaggcacatcc
tgaggcctttgctggaacaggactatgggggagtcaataactggatacac
ccaaacttcaatacaatctcacatctctgataacccgacaccacagtgta
tgcttcaagggcagtaagacaatgttttagggatctcaagttccaaaact
gaaggagactcaggaaaggctccaagactcacaatacaaagtgataggga
ggcagcctgggggttgtaaacttgtgttctggtttattctctcaggaatc
ccacaggcatcaggtgtgcacaactctctagaggaagaagtcgggcagtc
tttggagggagaagcttgctctgggtgttcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_101713285_101714209
seq2: B6Ng01-259P02.g_69_999

seq1  GAATTCAGTGTCCAACTCCAGAGAGGCAATAAAAATGTTTCAAATGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTCCAACTCCAGAGAGGCAATAAAAATGTTTCAAATGGAAT  50

seq1  CTCATGAATCAAAGTCCGAGCTGATTTTCTCTCACATCAAGAGCTGCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAATCAAAGTCCGAGCTGATTTTCTCTCACATCAAGAGCTGCCCC  100

seq1  ACCTTGGGCAATCCCAGGACCGCCAGGCCTCCTAGTCCTTGTGTGGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGGCAATCCCAGGACCGCCAGGCCTCCTAGTCCTTGTGTGGTTTA  150

seq1  TGAACTATTGAGACACTAACTTGTGTTACAGAGAGGAACAGCCAAACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTATTGAGACACTAACTTGTGTTACAGAGAGGAACAGCCAAACAGA  200

seq1  TATTTTGATCCTGTTTGTTTTTGTTTTAGGTTTTTTGTTTTTTTCGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGATCCTGTTTGTTTTTGTTTTAGGTTTTTTGTTTTTTTCGAGAC  250

seq1  AGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTACACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTACACCA  300

seq1  GGCTGGCCTTGAACTCAGAAATCCACCTGAGTCTGCCTCCCGAGTGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTTGAACTCAGAAATCCACCTGAGTCTGCCTCCCGAGTGCTGG  350

seq1  GATTAAAGGCGAGCACCACCACTGCCGGGTGACATTTTGATTCTTAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCGAGCACCACCACTGCCGGGTGACATTTTGATTCTTAAAAG  400

seq1  TCACATGGAAATGAACAGAATAACAACTTTTTACAGTTATAGAAGTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGGAAATGAACAGAATAACAACTTTTTACAGTTATAGAAGTGACA  450

seq1  AAGCTGTCAGGGTTATAATGAACAGGTCACAGTTATATGAAGTGATAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTCAGGGTTATAATGAACAGGTCACAGTTATATGAAGTGATAAAG  500

seq1  CTGTCAGTGCGACAAAAGGTCCTATGAACTACAACACTGCCATTGTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGTGCGACAAAAGGTCCTATGAACTACAACACTGCCATTGTTTCC  550

seq1  CATTTATCTTAACCACAGCTCCGGAAGTCAGACACAGGACAGGCACATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATCTTAACCACAGCTCCGGAAGTCAGACACAGGACAGGCACATCC  600

seq1  TGAGGCC-TTGCTGGAACAGGACTATGGGGGAGTCAATAACTGGATACA-  648
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAGGCCTTTGCTGGAACAGGACTATGGGGGAGTCAATAACTGGATACAC  650

seq1  CCAAACTTCAATACAATCTCACATCTCTGATAACCCGACACCACAGTGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTTCAATACAATCTCACATCTCTGATAACCCGACACCACAGTGTA  700

seq1  GGCTTCAAGGGCAGTAAGACAATG-TTTAGGGATCTCAAGTTCCAAAACT  747
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCTTCAAGGGCAGTAAGACAATGTTTTAGGGATCTCAAGTTCCAAAACT  750

seq1  GAAAGGAGACTCAGGAAAGGC-CCAAGACTCACAATACAAAGTGATAGGG  796
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  G-AAGGAGACTCAGGAAAGGCTCCAAGACTCACAATACAAAGTGATAGGG  799

seq1  AGGCAGCCTGGGGTTGTTAAACTTGTGTTCTGGTTTATTCTCTCAGGATT  846
      ||||||||||||| |  ||||||||||||||||||||||||||||||| |
seq2  AGGCAGCCTGGGGGTTGTAAACTTGTGTTCTGGTTTATTCTCTCAGGAAT  849

seq1  CCCACAGGCATCAGGTGTGCACAACCTACTAGAGGAAGAGGT-GGGCAG-  894
      |||||||||||||||||||||||||   ||||||||||| || |||||| 
seq2  CCCACAGGCATCAGGTGTGCACAACTCTCTAGAGGAAGAAGTCGGGCAGT  899

seq1  CCTTGGAGGGAGAAGC-TGCCCTGGGTGTTGG  925
      | |||||||||||||| ||| ||||||||| |
seq2  CTTTGGAGGGAGAAGCTTGCTCTGGGTGTTCG  931