BAC Information

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BAC

Clone NameB6Ng01-262A14
Chromosome12 (Build37)
Map Location 67,919,115 - 68,044,438
singlet/doubletdoublet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262A14.bB6Ng01-262A14.g
ACCGA066559GA066560
length1,1021,102
definitionB6Ng01-262A14.b B6Ng01-262A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,919,115 - 67,920,215)(68,043,335 - 68,044,438)
sequence
gaattcaattatgatgaaaatgcaaatattcaacttttattttatcagag
actcaattttaagaaactatttcataccagtaggcaaattcaagaaaatg
aagaagttctgttttttgtttttttggattttttttttccaagcaaaata
gaaagcattgagctgcctcctcatccccttttccctcttggtctttcttg
atggcttctgctcctttactgacctcttccttcccaggtgtcttgtcctg
tgacccttatccatagcactccatttctcagacatcacaaacacgagttt
taaatagttttgtgcaaggatgactcaaaataattaccataggtcagacc
tcctgcctaaatcccagatttttgcctaccgactgcttatcttgcatcta
cagcacaaaaaatcattatcaacacttgatctatcctccaaactggtctt
cacattctttcctgtcccaattattgccaatgctactgttttttgaatct
aaaaactttccatgccccaccactgatgagaaaaagaggatttaagtaaa
aaccacaaagtcatatcacttatcatttttaaaacacaataaaataaaac
aaataacaaaaagaaaacaaaacacagtgtctggagacatagatcagttg
tagcacccttgattaactggagcctggagcccaggtttaattcctagcta
ctccacacctctgctcaaaaaccaaatcaaaacaacaaatacatttctga
taaacttaatttgcttgttggcctgccgttttatttatttgtgtttttga
gaaatagtttcatgtaacccaggcaggccttaaactcactatatatactg
ggcctagcattgagctcctcaagtctctagctaatagagctgaaattaca
ttaccagcatgctccagctcttgtgatagaatttaaaataggtttttata
agtgatgaatcggtaacatagtcatttattcatttccctattttcaggaa
actatggagacggcacttacgttcagtgatcatgatggagtctcgggact
caggtttaaatcacaggtgatggagaggggacaggagtacggataagacg
ca

gaattctttgttcagctctgagccccatttttaatggggttatttgattt
tctggagcccaccttcttgagttctttatatatattggatattagtcccc
tatctgctttaggataggtaaagatcctttcccaatctgatggtggtctt
tttgtcttgttgacggtgtcttttgccttgcagaaactttgcagttagca
tcctgtcatgtttcattatacaagcctgactttgaaaacattcctagttt
cattttttttaactgtttccttttagccgtttaaccatgtatgaacatct
ttctttcctatcaaaacaaaaaacaaaaagaacaaaaacaaaaacaaaaa
caaaaaaaaaaaaacaaaaacaaaaacccaacaaaacaaaaacagtcttt
tcttatggtgtatgatgattcagttgtatggcttctatataaccttctta
aattttgtgaagaaatttcatcaaaatttgtattgattaggccttcattt
ccatttattttggtcttaaatcaatgcaggctatagacattttcctttct
ttggaagagcataactaacaggttactaggtatttttggcagaaaaatac
aaaacattatgtttgaaaaccatcattgcctttattttctattttaatga
ataataagatcattccctaacagaatgtgaagaaatggcattcaggaccc
caggcaagtgagagaattaacaagagcagagaaagattgatttcaaatgt
gtttaccaggtcaggaagcatgtgtttgcagatgttgagctagtttaatt
ttactcattttgggtttgtatgctggaagagagaaatactgtttttgtcc
ataagtttattttggatggtggtgttcactgttgcgctcacctcatccag
caagaaaaaacgcaacacggttgggattcttctcaacagcctttttttat
ttcaggaacactagatgccacgggacttcgaaaaccaggagactgcttat
atacacccagcactgggggagagctatgtgttctcttggattgtcagtct
tgtcggcacttgaatttgttattgccaccccacctcgggagggtgcgcca
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_67919115_67920215
seq2: B6Ng01-262A14.b_43_1144

seq1  GAATTCAATTATGATGAAAATGCAAATATTCAACTTTTATTTTATCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTATGATGAAAATGCAAATATTCAACTTTTATTTTATCAGAG  50

seq1  ACTCAATTTTAAGAAACTATTTCATACCAGTAGGCAAATTCAAGAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTTTAAGAAACTATTTCATACCAGTAGGCAAATTCAAGAAAATG  100

seq1  AAGAAGTTCTGTTTTTTGTTTTTTTGGATTTTTTTTTTCCAAGCAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTCTGTTTTTTGTTTTTTTGGATTTTTTTTTTCCAAGCAAAATA  150

seq1  GAAAGCATTGAGCTGCCTCCTCATCCCCTTTTCCCTCTTGGTCTTTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATTGAGCTGCCTCCTCATCCCCTTTTCCCTCTTGGTCTTTCTTG  200

seq1  ATGGCTTCTGCTCCTTTACTGACCTCTTCCTTCCCAGGTGTCTTGTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCTGCTCCTTTACTGACCTCTTCCTTCCCAGGTGTCTTGTCCTG  250

seq1  TGACCCTTATCCATAGCACTCCATTTCTCAGACATCACAAACACGAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTTATCCATAGCACTCCATTTCTCAGACATCACAAACACGAGTTT  300

seq1  TAAATAGTTTTGTGCAAGGATGACTCAAAATAATTACCATAGGTCAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTTTTGTGCAAGGATGACTCAAAATAATTACCATAGGTCAGACC  350

seq1  TCCTGCCTAAATCCCAGATTTTTGCCTACCGACTGCTTATCTTGCATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTAAATCCCAGATTTTTGCCTACCGACTGCTTATCTTGCATCTA  400

seq1  CAGCACAAAAAATCATTATCAACACTTGATCTATCCTCCAAACTGGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAAAAAATCATTATCAACACTTGATCTATCCTCCAAACTGGTCTT  450

seq1  CACATTCTTTCCTGTCCCAATTATTGCCAATGCTACTGTTTTTTGAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTTTCCTGTCCCAATTATTGCCAATGCTACTGTTTTTTGAATCT  500

seq1  AAAAACTTTCCATGCCCCACCACTGATGAGAAAAAGAGGATTTAAGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTTCCATGCCCCACCACTGATGAGAAAAAGAGGATTTAAGTAAA  550

seq1  AACCACAAAGTCATATCACTTATCATTTTTAAAACACAATAAAATAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAAGTCATATCACTTATCATTTTTAAAACACAATAAAATAAAAC  600

seq1  AAATAACAAAAAGAAAACAAAACACAGTGTCTGGAGACATAGATCAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAAAAAGAAAACAAAACACAGTGTCTGGAGACATAGATCAGTTG  650

seq1  TAGCACCCTTGATTAACTGGAGCCTGGAGCCCAGGTTTAATTCCTAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCCTTGATTAACTGGAGCCTGGAGCCCAGGTTTAATTCCTAGCTA  700

seq1  CTCCACACCTCTGCTCAAAAACCAAATCAAAACAACAAATACATTTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACACCTCTGCTCAAAAACCAAATCAAAACAACAAATACATTTCTGA  750

seq1  TAAACTTAATTTGCTTGTTGGCCTGCCGTTTTATTTATTTGTGTTTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTAATTTGCTTGTTGGCCTGCCGTTTTATTTATTTGTGTTTTTGA  800

seq1  GAAATAGTTTCATGTAACCCAGGCAGGCCTTAAACTCACTATATATACT-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAATAGTTTCATGTAACCCAGGCAGGCCTTAAACTCACTATATATACTG  850

seq1  GGCCTAGCATTGAGCTCCTCAAGTCTCTAGCTAATAGAGCTGAAATTACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGCATTGAGCTCCTCAAGTCTCTAGCTAATAGAGCTGAAATTACA  900

seq1  TTACCAGCATGCTCCAGCTCTTGTGATAGAATTTAAAATAGGTTTTTATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGCATGCTCCAGCTCTTGTGATAGAATTTAAAATAGGTTTTTATA  950

seq1  AGTGATGAATCGGTAACATAGTCATTTATTCATTTCCCTTATTTTTCAGG  999
      |||||||||||||||||||||||||||||||||||||||   ||||||||
seq2  AGTGATGAATCGGTAACATAGTCATTTATTCATTTCCCT--ATTTTCAGG  998

seq1  AAACTAT-GAGACCGCACTTACGTTCAGTGATTCATGATGGAGTCTCGGG  1048
      ||||||| ||||| ||||||||||||||||| ||||||||||||||||||
seq2  AAACTATGGAGACGGCACTTACGTTCAGTGA-TCATGATGGAGTCTCGGG  1047

seq1  ACTCAGTTTAAAATCACA-GTGAT-GAGA-GTGACA-GAGTACAGATAAA  1094
      |||||| || |||||||| ||||| |||| | |||| |||||| |||  |
seq2  ACTCAGGTTTAAATCACAGGTGATGGAGAGGGGACAGGAGTACGGAT--A  1095

seq1  AGACGCA  1101
      |||||||
seq2  AGACGCA  1102


seq1: chr12_68043335_68044438
seq2: B6Ng01-262A14.g_68_1169 (reverse)

seq1  TCTGGCGCCAACCCCTCCCGA-GTGGG--TGCA--TACAAATCAAAGTGC  45
      ||||||||    ||||||||| |||||   |||   ||||||  ||||||
seq2  TCTGGCGC---ACCCTCCCGAGGTGGGGTGGCAATAACAAATTCAAGTGC  47

seq1  CGAC-AGACTGACCAATCCCAGGAGGACACATAGCTCT-CCCCAGTGCTG  93
      |||| ||||||| |||| ||| ||| |||||||||||| |||||||||| 
seq2  CGACAAGACTGA-CAAT-CCAAGAGAACACATAGCTCTCCCCCAGTGCT-  94

seq1  GGGTGTATATAAGCAGTCCTCCCTGGGTTTTCGGAGTTCCCGTGGCATCT  143
      ||||||||||||||||| ||||   |||||||| || |||||||||||||
seq2  GGGTGTATATAAGCAGT-CTCC--TGGTTTTCGAAG-TCCCGTGGCATCT  140

seq1  AGGTGTTCCTGAAAT-AAAAAAGGCTGTTGAGAAGAAT-CCAACCGTGTT  191
      | ||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  A-GTGTTCCTGAAATAAAAAAAGGCTGTTGAGAAGAATCCCAACCGTGTT  189

seq1  GCGTTTTTTCTTGCTGGATGAGGTGAGCGCAACAGTGAACACCACCATCC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTTTTCTTGCTGGATGAGGTGAGCGCAACAGTGAACACCACCATCC  239

seq1  AAAATAAACTTATGGACAAAAACAGTATTTCTCTCTTCCAGCATACAAAC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACTTATGGACAAAAACAGTATTTCTCTCTTCCAGCATACAAAC  289

seq1  CCAAAATGAGTAAAATTAAACTAGCTCAACATCTGCAAACACATGCTTCC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGAGTAAAATTAAACTAGCTCAACATCTGCAAACACATGCTTCC  339

seq1  TGACCTGGTAAACACATTTGAAATCAATCTTTCTCTGCTCTTGTTAATTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGGTAAACACATTTGAAATCAATCTTTCTCTGCTCTTGTTAATTC  389

seq1  TCTCACTTGCCTGGGGTCCTGAATGCCATTTCTTCACATTCTGTTAGGGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTGCCTGGGGTCCTGAATGCCATTTCTTCACATTCTGTTAGGGA  439

seq1  ATGATCTTATTATTCATTAAAATAGAAAATAAAGGCAATGATGGTTTTCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTTATTATTCATTAAAATAGAAAATAAAGGCAATGATGGTTTTCA  489

seq1  AACATAATGTTTTGTATTTTTCTGCCAAAAATACCTAGTAACCTGTTAGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAATGTTTTGTATTTTTCTGCCAAAAATACCTAGTAACCTGTTAGT  539

seq1  TATGCTCTTCCAAAGAAAGGAAAATGTCTATAGCCTGCATTGATTTAAGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCTTCCAAAGAAAGGAAAATGTCTATAGCCTGCATTGATTTAAGA  589

seq1  CCAAAATAAATGGAAATGAAGGCCTAATCAATACAAATTTTGATGAAATT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAAATGGAAATGAAGGCCTAATCAATACAAATTTTGATGAAATT  639

seq1  TCTTCACAAAATTTAAGAAGGTTATATAGAAGCCATACAACTGAATCATC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAAAATTTAAGAAGGTTATATAGAAGCCATACAACTGAATCATC  689

seq1  ATACACCATAAGAAAAGACTGTTTTTGTTTTGTTGGGTTTTTGTTTTTGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCATAAGAAAAGACTGTTTTTGTTTTGTTGGGTTTTTGTTTTTGT  739

seq1  TTTTTTTTTTTTGTTTTTGTTTTTGTTTTTGTTCTTTTTGTTTTTTGTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGTTTTTGTTTTTGTTTTTGTTCTTTTTGTTTTTTGTTT  789

seq1  TGATAGGAAAGAAAGATGTTCATACATGGTTAAACGGCTAAAAGGAAACA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGAAAGAAAGATGTTCATACATGGTTAAACGGCTAAAAGGAAACA  839

seq1  GTTAAAAAAAATGAAACTAGGAATGTTTTCAAAGTCAGGCTTGTATAATG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAAAATGAAACTAGGAATGTTTTCAAAGTCAGGCTTGTATAATG  889

seq1  AAACATGACAGGATGCTAACTGCAAAGTTTCTGCAAGGCAAAAGACACCG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGACAGGATGCTAACTGCAAAGTTTCTGCAAGGCAAAAGACACCG  939

seq1  TCAACAAGACAAAAAGACCACCATCAGATTGGGAAAGGATCTTTACCTAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGACAAAAAGACCACCATCAGATTGGGAAAGGATCTTTACCTAT  989

seq1  CCTAAAGCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAA  1039

seq1  GGTGGGCTCCAGAAAATCAAATAACCCCATTAAAAATGGGGCTCAGAGCT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCTCCAGAAAATCAAATAACCCCATTAAAAATGGGGCTCAGAGCT  1089

seq1  GAACAAAGAATTC  1104
      |||||||||||||
seq2  GAACAAAGAATTC  1102


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