BAC Information

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BAC

Clone NameB6Ng01-262L10
Chromosome12 (Build37)
Map Location 116,794,169 - 116,795,348
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554
Downstream geneEG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262L10.bB6Ng01-262L10.g
ACCGA067056GA067057
length8601,217
definitionB6Ng01-262L10.b B6Ng01-262L10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtatattgaaccatccctgcatccctgagatgaaacctacttg
gtcaggatggatgattgttttgatgtgttcttggatttggttagcaagaa
ctgtattgaagatttttccatcaatattcataagggaaattggtctgaag
ttctctatctttgttgggtctttttttgtggtttaggtatcagggtaatt
gtggcttcatagaatgagttgggtagagtaccttctgtttctatttgtgg
aatagtttgtgaagaactgggaatagatcttttttgaaggtctgatagaa
ctctgcattaaacccatctggtcctgggcttttttggttgggagattatt
aatgactgcttctacttctttaggggatataggactgtttagatcattaa
actgatcttgatttaactttggtacctggtatctgtctagaaacttgtcc
aattcttccaggttctccatttttgttgagtatagccttttgtagaagga
tctgattgtgttttgaatttcttcaggatctgttgttttatgtctccttt
ttcatttcctattttattaaatagaatgctttctctgtgccctctagtga
gtctggctaagggtttgtctatctagttgattttctcaaagaaccaactc
cttgattggttgattccttgaatagttcttcttgtttccacatggttgat
ttcacccctgagtttgattatttcctgacttatactcctcttgggtgaat
ttacttccttttgttctagagcttttaggtgtgttgtcaaagctgctaat
gtgtgctctctctagtttctttttgggaggcactcagagctttgagtttt
ccttttagaa
gaattctaaacccttgatattggtcagggatgcccttggactgttggaac
actggtggaaggctttagccatgtcagagcacttataataggaaaatact
gaaagagagcacgtggatccatactctagactagcgcggtaatggaactt
gggaatgaaaaattaatgtatgggtagagaacactagactccaggaggag
agcttccttgaaactcttttgcctcatgagtgacttttaagcctttcggg
ttgtccagttgacttgaccagagagcgtagcagtgttctcttatttcttg
gtagtgcatgtgttagtaaagtgtttcaggatttgatgtttccctaatga
agacagatatgaaatattgaccctgtaatgatgaaaaccaagagcactat
gtaggaatatgtatgtaatcatgtgtatttaaatatctgaagtagagcta
ctcatatttaaacagcaatacatactgcataaatacagattactcaaaaa
tattgtgttctaaccttgggttcacacattggatccacaaaatattgcag
gatagaaagaggaggaccagtttaattcatgttctctcttccttaactgg
tcaaaaaccatgtgatgttctgtgaattgtcagtttacagggcagcatcc
tctagatatcaatgagttaacactataaaggaacatgtatccctgtaatc
cagggtgctaaatggttttacttggcatttcagaatgcctgttgtgctgg
gtaatgtttataatactgtacatcatactccagtatatgagatactgatg
gctcgcataagttgaattgcacagaagtgcatgcctatttaagtagtgtg
gatttacatagaaatcctcctcttataatgtaatccattagcaaatatcc
aaattttcataatattataaattagataatatgttgcttattccccctaa
gttaaacctaatattgagggatccattattactttgcctgatctggttac
agtgtctaatgcaggagcttttccttgactaagtgatatatattgatttt
ataccattttttctattttcccctttccaagtttaagtgaaattttccct
tcctcgtggtggttggcccaatatttttttatgatcctacaccccttagg
agaattcttttttagaagtgtgctattatttgtattggcctatgaagaaa
ccacctatgtgaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116794169_116795348
seq2: B6Ng01-262L10.g_68_1284

seq1  GAATTCTAAACCCTTGATATTGGTCAGGGATGCCCTTGGACTGTTGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACCCTTGATATTGGTCAGGGATGCCCTTGGACTGTTGGAAC  50

seq1  ACTGGTGGAAGGCTTTAGCCATGTCAGAGCACTTATAATAGGAAAATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGGAAGGCTTTAGCCATGTCAGAGCACTTATAATAGGAAAATACT  100

seq1  GAAAGAGAGCACGTGGATCCATACTCTAGACTAGCGCGGTAATGGAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGCACGTGGATCCATACTCTAGACTAGCGCGGTAATGGAACTT  150

seq1  GGGAATGAAAAATTAATGTATGGGTAGAGAACACTAGACTCCAGGAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGAAAAATTAATGTATGGGTAGAGAACACTAGACTCCAGGAGGAG  200

seq1  AGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTTTTAAGCCTTTCGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTTTTAAGCCTTTCGGG  250

seq1  TTGTCCAGTTGACTTGACCAGAGAGCGTAGCAGTGTTCTCTTATTTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAGTTGACTTGACCAGAGAGCGTAGCAGTGTTCTCTTATTTCTTG  300

seq1  GTAGTGCATGTGTTAGTAAAGTGTTTCAGGATTTGATGTTTCCCTAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGCATGTGTTAGTAAAGTGTTTCAGGATTTGATGTTTCCCTAATGA  350

seq1  AGACAGATATGAAATATTGACCCTGTAATGATGAAAACCAAGAGCACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATATGAAATATTGACCCTGTAATGATGAAAACCAAGAGCACTAT  400

seq1  GTAGGAATATGTATGTAATCATGTGTATTTAAATATCTGAAGTAGAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAATATGTATGTAATCATGTGTATTTAAATATCTGAAGTAGAGCTA  450

seq1  CTCATATTTAAACAGCAATACATACTGCATAAATACAGATTACTCAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATTTAAACAGCAATACATACTGCATAAATACAGATTACTCAAAAA  500

seq1  TATTGTGTTCTAACCTTGGGTTCACACATTGGATCCACAAAATATTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTTCTAACCTTGGGTTCACACATTGGATCCACAAAATATTGCAG  550

seq1  GATAGAAAGAGGAGGACCAGTTTAATTCATGTTCTCTCTTCCTTAACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAAGAGGAGGACCAGTTTAATTCATGTTCTCTCTTCCTTAACTGG  600

seq1  TCAAAAACCATGTGATGTTCTGTGAATTGTCAGTTTACAGGGCAGCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACCATGTGATGTTCTGTGAATTGTCAGTTTACAGGGCAGCATCC  650

seq1  TCTAGATATCAATGAGTTAACACTATAAAGGAACATGTATCCCTGTAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATATCAATGAGTTAACACTATAAAGGAACATGTATCCCTGTAATC  700

seq1  CAGGGTGCTAAATGGTTTTACTTGGCATTTCAGAATGCCTGTTGTGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGCTAAATGGTTTTACTTGGCATTTCAGAATGCCTGTTGTGCTGG  750

seq1  GTAATGTTTATAATACTGTACATCATACTCCAGTATATGAGATACTGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTTTATAATACTGTACATCATACTCCAGTATATGAGATACTGATG  800

seq1  GCTCGCATAAGTTGAATTGCACAGAAGTGCATGCCTATTTAAGTAGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCATAAGTTGAATTGCACAGAAGTGCATGCCTATTTAAGTAGTGTG  850

seq1  GATTTACATAGAAATCCTCCTCTTATAATGTAATCCATTAGCAAATATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACATAGAAATCCTCCTCTTATAATGTAATCCATTAGCAAATATCC  900

seq1  AAA-TTTCATAATATTATAAA-TAGATAATATG-TGCTTATT-CCCCTAA  946
      ||| ||||||||||||||||| ||||||||||| |||||||| |||||||
seq2  AAATTTTCATAATATTATAAATTAGATAATATGTTGCTTATTCCCCCTAA  950

seq1  GTTAAA-CTAATA-TGA-GGATC--ATATTACTT--GCTGATCTGG-TAC  988
      |||||| |||||| ||| |||||   ||||||||   ||||||||| |||
seq2  GTTAAACCTAATATTGAGGGATCCATTATTACTTTGCCTGATCTGGTTAC  1000

seq1  AGTGTCT-ATGCAGGAGC-TTTCCTTGACTAAGT-TGATATATTGA-TTT  1034
      ||||||| |||||||||| |||||||||||||||   ||||||||| |||
seq2  AGTGTCTAATGCAGGAGCTTTTCCTTGACTAAGTGATATATATTGATTTT  1050

seq1  ATACCA-TTTTTCTATTTTCCCCTTTCAAAGTTAATG---AATTTTCCCT  1080
      |||||| |||||||||||||||||||| ||||| | |   ||||||||||
seq2  ATACCATTTTTTCTATTTTCCCCTTTCCAAGTTTAAGTGAAATTTTCCCT  1100

seq1  T-CTCGT-GTGGTTGGGCC-ATATTTTTAT-TGATC--ACAAACCCTAGG  1124
      | ||||| |||||||| || |||||||| | |||||  |||  || ||||
seq2  TCCTCGTGGTGGTTGGCCCAATATTTTTTTATGATCCTACACCCCTTAGG  1150

seq1  AGA--TC-CTTTTAGAAGTGTG-TA-TATTTG-AT--GGCTATGAAG--A  1164
      |||  ||  ||||||||||||| || |||||| ||  | ||||||||  |
seq2  AGAATTCTTTTTTAGAAGTGTGCTATTATTTGTATTGGCCTATGAAGAAA  1200

seq1  CCACCTAAGT-AAGGAA  1180
      ||||||| || ||||||
seq2  CCACCTATGTGAAGGAA  1217