BAC Information

Click to search

BAC

Clone NameB6Ng01-263I01
Chromosome12 (Build37)
Map Location 97,128,250 - 97,129,360
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217786, LOC100039603, LOC667688, Flrt2
Downstream gene1700019M22Rik, LOC100039664
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263I01.bB6Ng01-263I01.g
ACCGA067654GA067655
length1,1071,203
definitionB6Ng01-263I01.b B6Ng01-263I01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctcatacttaatggctaagcaaatggtaactatgtcatctttt
ccttgtgtatcagcgtttttaaaatagtaacactatgtgaggagggatct
gacagaaaatttattttctgaggatccacatggggcagcagtttgctgaa
gggatgcctgaaacgtcaatatgcatggtcaagataactcaagatgaagc
tagtgttgctaattgacaagaactcttacttcttaatggtcccattccac
cactcttcctggagtttcttccagcatagtagctgggtttctctagtggg
aaagacccaagacactgaagtgatgattgtaatatctattatgagtcagt
cttgatttgatgtggggttgcatgttacaaggccatggaattaaggctta
gtgctggctgacatactgaagatctgctactacaagaaggaaactctcaa
cactcaacacttataaaacttgatctgctaatcatgttttactaaggaat
atcccacctttataatctccgggtcaaatctggtcattttcacaagggac
tcaggaagagttagcttcaccttcccaaagacattctagaaatttgattt
ttggaagcctaagcaatgtagaaatttacccagactgtagaaggctgttt
tcctcccatgcttggctcatttcttttttgaccatgggaaccagatggca
actctctcaggggtactggtggcttttaaaccatatttataagattacat
gagacagcatgtctttaatttgctgtttagcttcagagcaatatgtttct
atctttggaaaacagttttgctaaggtaccggaacaaaggatcggaaatg
agaatttcttggatcaatttcctaagtgacttattggttgcagcgtaccc
ttcaacaagacacttaatgtgcttgcctgcaaagcaaggatatgaagact
gaattccttagacgaattcatcctagctgaattcatataaagcaatagtt
ttgacaaaatcttccacaaaagagtactattggaaacaaaaaaaaatttt
ttttttgtagaactctagagaacgcaactacagcctattaaaatgctaat
cagtttg

gaattcaaggcccatacctaaacatagtagaagtaatatagggcaaacca
gtagccaacatcgcactaaatggagagaaacttgaagcaataccactaaa
atcagggatgaaacaagactgcccactttctctcaactcaaacaaatcag
tagccttcttctattcaaaggataaacaggctgagaaagaaattagggaa
atgacaccctttataatagtcacaaataatataaaatgccttggtgtgac
tctaaccaagtaagtgaaagatctatatgacaagaacttcaagtctctga
agaaagaaatgaagaatattttcaaaaatggaaatatctcccatgctcat
ggattggcaggattaatatagaaaaatggtcatcttgctgaaagaaatct
acagattcagtaaaaaacccattaaaattccaactcaatcttcatagagt
tagaaagaacaatttgcaaattcatttcaaattacccaaaactcagcata
ttgaaaattattctcaacagaaaaagaacttctgtgggaatcacatagcg
ataaaaattgtacagtaatgatacagagacaggcaggtagatcaatggaa
tagaattgaagacccagaaataaacccacacacctatggtcacttggatt
ttgacaaaggagctaaaaccaacaagtgggaaaaagacagcatttttcac
aaatagtgctggtttaactggaggtcagcacgtagaaaaatgcacattga
tccatttttacctccttttacataactcaagtccaagtggatcaaagacc
ttcagataaaaccagatacattgaatctaatagaagagaaagtggggaag
agcctcgaacaaataggcacaggggaaaacagaccaaatgaagttcatga
aggaggaagaccaaagtttggatgcttcagtccttagaacagggaacaaa
attattcacagcacgaaatactgagaccaactggtggagcagaaactgaa
ggaaagtccatccagaaactgtttcccttcttggatcatcctatataggt
caccaaaccacagacactctattgtgaatgccaagaagtgcatgctgaca
gggagcctcatatggctgtcctactgtgagaagcctgccgaacctgaaca
atacagaggtgatgccttctcaccgtggaacctggacgcaatgtggggct
ctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_97128250_97129360
seq2: B6Ng01-263I01.b_46_1152

seq1  GAATTCTCTCATACTTAATGGCTAAGCAAATGGTAACTATGTCATCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCATACTTAATGGCTAAGCAAATGGTAACTATGTCATCTTTT  50

seq1  CCTTGTGTATCAGCGTTTTTAAAATAGTAACACTATGTGAGGAGGGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTATCAGCGTTTTTAAAATAGTAACACTATGTGAGGAGGGATCT  100

seq1  GACAGAAAATTTATTTTCTGAGGATCCACATGGGGCAGCAGTTTGCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAAATTTATTTTCTGAGGATCCACATGGGGCAGCAGTTTGCTGAA  150

seq1  GGGATGCCTGAAACGTCAATATGCATGGTCAAGATAACTCAAGATGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCCTGAAACGTCAATATGCATGGTCAAGATAACTCAAGATGAAGC  200

seq1  TAGTGTTGCTAATTGACAAGAACTCTTACTTCTTAATGGTCCCATTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTGCTAATTGACAAGAACTCTTACTTCTTAATGGTCCCATTCCAC  250

seq1  CACTCTTCCTGGAGTTTCTTCCAGCATAGTAGCTGGGTTTCTCTAGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTCCTGGAGTTTCTTCCAGCATAGTAGCTGGGTTTCTCTAGTGGG  300

seq1  AAAGACCCAAGACACTGAAGTGATGATTGTAATATCTATTATGAGTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCCAAGACACTGAAGTGATGATTGTAATATCTATTATGAGTCAGT  350

seq1  CTTGATTTGATGTGGGGTTGCATGTTACAAGGCCATGGAATTAAGGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTGATGTGGGGTTGCATGTTACAAGGCCATGGAATTAAGGCTTA  400

seq1  GTGCTGGCTGACATACTGAAGATCTGCTACTACAAGAAGGAAACTCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGCTGACATACTGAAGATCTGCTACTACAAGAAGGAAACTCTCAA  450

seq1  CACTCAACACTTATAAAACTTGATCTGCTAATCATGTTTTACTAAGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAACACTTATAAAACTTGATCTGCTAATCATGTTTTACTAAGGAAT  500

seq1  ATCCCACCTTTATAATCTCCGGGTCAAATCTGGTCATTTTCACAAGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACCTTTATAATCTCCGGGTCAAATCTGGTCATTTTCACAAGGGAC  550

seq1  TCAGGAAGAGTTAGCTTCACCTTCCCAAAGACATTCTAGAAATTTGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGAGTTAGCTTCACCTTCCCAAAGACATTCTAGAAATTTGATTT  600

seq1  TTGGAAGCCTAAGCAATGTAGAAATTTACCCAGACTGTAGAAGGCTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGCCTAAGCAATGTAGAAATTTACCCAGACTGTAGAAGGCTGTTT  650

seq1  TCCTCCCATGCTTGGCTCATTTCTTTTTTGACCATGGGAACCAGATGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCATGCTTGGCTCATTTCTTTTTTGACCATGGGAACCAGATGGCA  700

seq1  ACTCTCTCAGGGGTACTGGTGGCTTTTAAACCATATTTATAAGATTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCAGGGGTACTGGTGGCTTTTAAACCATATTTATAAGATTACAT  750

seq1  GAGACAGCATGTCTTTAATTTGCTGTTTAGCTTCAGAGCAATATGTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCATGTCTTTAATTTGCTGTTTAGCTTCAGAGCAATATGTTTCT  800

seq1  ATCTTTGGAAAACAGTTTTGCTAAGGTACCGGAACAAAGGATCGGAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGAAAACAGTTTTGCTAAGGTACCGGAACAAAGGATCGGAAATG  850

seq1  AGAATTTCTTGGATCAATTTCCTAAGTGACTTATTGGTTGCAGCGTACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCTTGGATCAATTTCCTAAGTGACTTATTGGTTGCAGCGTACCC  900

seq1  TTCAACAAGACACTTAATGTGCTTGCCTGCAAAGCAAGGATATGAAGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAGACACTTAATGTGCTTGCCTGCAAAGCAAGGATATGAAGACT  950

seq1  GAATTCCTTAGAAGGAATTCATCCTAGCTGAATTCATATTAAAGCAATAG  1000
      ||||||||||| | |||||||||||||||||||||||| |||||||||| 
seq2  GAATTCCTTAG-ACGAATTCATCCTAGCTGAATTCATA-TAAAGCAATA-  997

seq1  GTTTTGAACAAAATC-TCCACAAAAAGAGTACTA-TGGAAACAAAAAAAA  1048
      |||||| |||||||| ||||| |||||||||||| |||||||||||||||
seq2  GTTTTG-ACAAAATCTTCCAC-AAAAGAGTACTATTGGAAACAAAAAAAA  1045

seq1  A--TTTTTTTTGTAGAACTCTTAGGAGACAGCAACTACAAGCCTA-TAAA  1095
      |  ||||||||||||||||||   ||||  |||||||| |||||| ||||
seq2  ATTTTTTTTTTGTAGAACTCT--AGAGAACGCAACTAC-AGCCTATTAAA  1092

seq1  ATGCTAAATCAGTTTG  1111
      ||||| ||||||||||
seq2  ATGCT-AATCAGTTTG  1107


| Home | SequenceCutter | Blast | Download |