BAC Information

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BAC

Clone NameB6Ng01-264L09
Chromosome12 (Build37)
Map Location 13,323,863 - 13,475,293
singlet/doubletdoublet
Overlap geneLOC627199, LOC627189
Upstream geneD12Ertd553e, LOC100043215, Mycn, EG668473, LOC628449, Ddx1
Downstream geneLOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264L09.bB6Ng01-264L09.g
ACCGA068544GA068545
length1,0071,168
definitionB6Ng01-264L09.b B6Ng01-264L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,474,275 - 13,475,293)(13,323,863 - 13,325,045)
sequence
gaattccctggactctctctggtaagttacttcatgatcagataaacctc
tccctcacttaaactgcttaagaaataatctgaaatatctccaatgttta
aaatcaactgccttcacagttaaagctgacagagaatgtaagacctgtga
ggaggagaataatttgtacacttatgtgctaagcaattcactaaaagaat
gtgtccatcttgtctagacacacagcagagcaagcagaggtgagatggct
acgcatgatgagcttgggatactacagagagacaggatttgtcagagaag
tcttctcagaagacttaatatccagcctaacttcagatactagcaccaga
aagtgcccaaggaatatgaagatatactccagcaaaggttagataagtac
attctagggccaagaactataaagaaagacagaatgaataaatcaactct
cagtgctattagggaattatgtgggaatcagctgtggggtggttaaaact
gtcagcaatatggagttctgaaacacctctaggcaagtttacgagaaagt
ttctaacttgagttaattagggcatgaagacctaccctaaatgtgagctg
caccagcccaagaactaagagtcacatactgaatatattaagaaagtgag
ctcaacgccagcattcctttctcacttcctgactgtggctgcaagtgact
agttaccaacaccatttcccagccatgggacagtgccttcaaactctgag
ccaacatgaaccttcccttgctcaattactcctttcaggtctttgtcaca
gcacaggaaaggtaacacaccacaccacacaatgttatctggtgaaagaa
atagaacaaaaagggaaacatgctgtagttatgtgataagtatttccttc
atgtacaatgtttacatatacctctgaccttcgtcatgcatacagctccc
ttgtgtagttgggtgctttctatcagtgtggccacgtaatcttctgtact
catatga

gaattctggttcctatgacttgctttggggagtattagaagcctgggata
ggagggcaggagaaggccggagatacattgatatccatcagttcaaaggc
actagcctacggtgatatgttctgagctccaacagatgtaaaaggaaggg
gcaggaaggctgctccttagagtgtatgcaggtggtactaagacctgggt
gtgcttccttgtaggttgtgaacatcttaagtgctgctcctctcagtata
tgtgcatagtgtacaaggagcttgaatcatgcccaggccagtgtctgctt
acagcaaaatagacactactctctactgtgaggcgtggatgtagaagaaa
catggtagtgagctgtcatttgtatcagttatcaacattgtccctatctt
ttgtattcatgttgtgtcttagttcctgtctgtgaccattaagtccagtg
tcatttgtttccccgaactcttaggctgagggagccttccttgcattgga
atagagatcaagggaaacaaactatctatcatgtctgtatttttttttta
attgtaaaaatttcataggtcttggtgaatttttcatagtttttttaaac
atgtttgactcatacaattatgtatatatctttgtatttagccaggctac
aatgagcttaatcctgattggaggttgtctcctgagaagagaaagaaagt
aaaaggtgagtagggtataagaaatatgattattacagctttacaggagt
tctcttattgcctaagtgttctttagatataaagaatctcttatttcact
ctgtgtcaaccatggaatcttagccaggcagcagatcaaacactttgttt
tgtttttatttttccttctatgttttttgtttgtttggtagtgttctagg
tctttctctttaaaattttttatacatttctatatttgaaataatttgtt
ttttaaaataagcagatatctcttttggggaaatgagaaatggtgggaat
cagatttactgttaagtgaaagaggtgtttagtagattaacaaataaaaa
tggagagatcttaattatattattaagcctgggtatacgaatctttttat
ggctgtaagttggtgtagttacctatagaccttgaaaaaagaacttgaga
tttaaccagaatttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_13474275_13475293
seq2: B6Ng01-264L09.b_45_1051 (reverse)

seq1  TCATATGGGAAGGTACAGAAAGAATACGTGGCCCACACTGATAGATAGCA  50
      |||||||     |||||| |||| ||||||| ||||||||||||| ||||
seq2  TCATATG----AGTACAG-AAGATTACGTGG-CCACACTGATAGAAAGCA  44

seq1  CCAAACTACAC-AGGGAGCTGTATGCATGACGAAAGGTTCAGAGTTATAT  99
      || |||||||| ||||||||||||||||||||||  | |||||| |||||
seq2  CCCAACTACACAAGGGAGCTGTATGCATGACGAA--GGTCAGAGGTATAT  92

seq1  GTAAAACATTGTACATGAAAAGGAAATAACTATCAACCATAAACTACAGC  149
      || ||||||||||||||  |||||||||  |||||  ||| |||||||||
seq2  GT-AAACATTGTACATG--AAGGAAATACTTATCA--CAT-AACTACAGC  136

seq1  ATGTTTCCCTTTTTG-TCTATTTCTTTCACCAGAT-ACATTGTGT-GTGT  196
      ||||||||||||||| ||||||||||||||||||| ||||||||| ||||
seq2  ATGTTTCCCTTTTTGTTCTATTTCTTTCACCAGATAACATTGTGTGGTGT  186

seq1  -GTGTGTTACCTTTCTTGTTGCTGTGACAAAAGACCTGAAAGGAGTAATT  245
       |||||||||||||| || ||||||||| ||||||||||||||||||| |
seq2  GGTGTGTTACCTTTCCTG-TGCTGTGAC-AAAGACCTGAAAGGAGTAA-T  233

seq1  TGAGCAAGGGAAGGTTCATGTTGGCTCAGAGTTTGAAGGCACTGTCCCAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGGGAAGGTTCATGTTGGCTCAGAGTTTGAAGGCACTGTCCCAT  283

seq1  GGCTGGGAAATGGTGTTGGTAACTAGTCACTTGCAGCCACAGTCAGGAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGAAATGGTGTTGGTAACTAGTCACTTGCAGCCACAGTCAGGAAG  333

seq1  TGAGAAAGGAATGCTGGCGTTGAGCTCACTTTCTTAATATATTCAGTATG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGGAATGCTGGCGTTGAGCTCACTTTCTTAATATATTCAGTATG  383

seq1  TGACTCTTAGTTCTTGGGCTGGTGCAGCTCACATTTAGGGTAGGTCTTCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTTAGTTCTTGGGCTGGTGCAGCTCACATTTAGGGTAGGTCTTCA  433

seq1  TGCCCTAATTAACTCAAGTTAGAAACTTTCTCGTAAACTTGCCTAGAGGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAATTAACTCAAGTTAGAAACTTTCTCGTAAACTTGCCTAGAGGT  483

seq1  GTTTCAGAACTCCATATTGCTGACAGTTTTAACCACCCCACAGCTGATTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAACTCCATATTGCTGACAGTTTTAACCACCCCACAGCTGATTC  533

seq1  CCACATAATTCCCTAATAGCACTGAGAGTTGATTTATTCATTCTGTCTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAATTCCCTAATAGCACTGAGAGTTGATTTATTCATTCTGTCTTT  583

seq1  CTTTATAGTTCTTGGCCCTAGAATGTACTTATCTAACCTTTGCTGGAGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAGTTCTTGGCCCTAGAATGTACTTATCTAACCTTTGCTGGAGTA  633

seq1  TATCTTCATATTCCTTGGGCACTTTCTGGTGCTAGTATCTGAAGTTAGGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCATATTCCTTGGGCACTTTCTGGTGCTAGTATCTGAAGTTAGGC  683

seq1  TGGATATTAAGTCTTCTGAGAAGACTTCTCTGACAAATCCTGTCTCTCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTAAGTCTTCTGAGAAGACTTCTCTGACAAATCCTGTCTCTCTG  733

seq1  TAGTATCCCAAGCTCATCATGCGTAGCCATCTCACCTCTGCTTGCTCTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCCCAAGCTCATCATGCGTAGCCATCTCACCTCTGCTTGCTCTGC  783

seq1  TGTGTGTCTAGACAAGATGGACACATTCTTTTAGTGAATTGCTTAGCACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTAGACAAGATGGACACATTCTTTTAGTGAATTGCTTAGCACA  833

seq1  TAAGTGTACAAATTATTCTCCTCCTCACAGGTCTTACATTCTCTGTCAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTACAAATTATTCTCCTCCTCACAGGTCTTACATTCTCTGTCAGC  883

seq1  TTTAACTGTGAAGGCAGTTGATTTTAAACATTGGAGATATTTCAGATTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTGTGAAGGCAGTTGATTTTAAACATTGGAGATATTTCAGATTAT  933

seq1  TTCTTAAGCAGTTTAAGTGAGGGAGAGGTTTATCTGATCATGAAGTAACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGCAGTTTAAGTGAGGGAGAGGTTTATCTGATCATGAAGTAACT  983

seq1  TACCAGAGAGAGTCCAGGGAATTC  1019
      ||||||||||||||||||||||||
seq2  TACCAGAGAGAGTCCAGGGAATTC  1007


seq1: chr12_13323863_13325045
seq2: B6Ng01-264L09.g_67_1234

seq1  GAATTCTGGTTCCTATGACTTGCTTTGGGGAGTATTAGAAGCCTGGGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTTCCTATGACTTGCTTTGGGGAGTATTAGAAGCCTGGGATA  50

seq1  GGAGGGCAGGAGAAGGCCGGAGATACATTGATATCCATCAGTTCAAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCAGGAGAAGGCCGGAGATACATTGATATCCATCAGTTCAAAGGC  100

seq1  ACTAGCCTACGGTGATATGTTCTGAGCTCCAACAGATGTAAAAGGAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCTACGGTGATATGTTCTGAGCTCCAACAGATGTAAAAGGAAGGG  150

seq1  GCAGGAAGGCTGCTCCTTAGAGTGTATGCAGGTGGTACTAAGACCTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGGCTGCTCCTTAGAGTGTATGCAGGTGGTACTAAGACCTGGGT  200

seq1  GTGCTTCCTTGTAGGTTGTGAACATCTTAAGTGCTGCTCCTCTCAGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCTTGTAGGTTGTGAACATCTTAAGTGCTGCTCCTCTCAGTATA  250

seq1  TGTGCATAGTGTACAAGGAGCTTGAATCATGCCCAGGCCAGTGTCTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATAGTGTACAAGGAGCTTGAATCATGCCCAGGCCAGTGTCTGCTT  300

seq1  ACAGCAAAATAGACACTACTCTCTACTGTGAGGCGTGGATGTAGAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAAATAGACACTACTCTCTACTGTGAGGCGTGGATGTAGAAGAAA  350

seq1  CATGGTAGTGAGCTGTCATTTGTATCAGTTATCAACATTGTCCCTATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAGTGAGCTGTCATTTGTATCAGTTATCAACATTGTCCCTATCTT  400

seq1  TTGTATTCATGTTGTGTCTTAGTTCCTGTCTGTGACCATTAAGTCCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTCATGTTGTGTCTTAGTTCCTGTCTGTGACCATTAAGTCCAGTG  450

seq1  TCATTTGTTTCCCCGAACTCTTAGGCTGAGGGAGCCTTCCTTGCATTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTTTCCCCGAACTCTTAGGCTGAGGGAGCCTTCCTTGCATTGGA  500

seq1  ATAGAGATCAAGGGAAACAAACTATCTATCATGTCTGTATTTTTTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATCAAGGGAAACAAACTATCTATCATGTCTGTATTTTTTTTTTA  550

seq1  ATTGTAAAAATTTCATAGGTCTTGGTGAATTTTTCATAGTTTTTTTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAAAATTTCATAGGTCTTGGTGAATTTTTCATAGTTTTTTTAAAC  600

seq1  ATGTTTGACTCATACAATTATGTATATATCTTTGTATTTAGCCAGGCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGACTCATACAATTATGTATATATCTTTGTATTTAGCCAGGCTAC  650

seq1  AATGAGCTTAATCCTGATTGGAGGTTGTCTCCTGAGAAGAGAAAGAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCTTAATCCTGATTGGAGGTTGTCTCCTGAGAAGAGAAAGAAAGT  700

seq1  AAAAGGTGAGTAGGGTATAAGAAATATGATTATTACAGCTTTACAGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGAGTAGGGTATAAGAAATATGATTATTACAGCTTTACAGGAGT  750

seq1  TCTCTTATTGCCTAAGTGTTCTTTAGATATAAAGAATCTCTTATTTCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATTGCCTAAGTGTTCTTTAGATATAAAGAATCTCTTATTTCACT  800

seq1  CTGTGTCAACCATGGAATCTTAGCCAGGCAGCAGATCAAACACTTTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCAACCATGGAATCTTAGCCAGGCAGCAGATCAAACACTTTGTTT  850

seq1  TGTTTTTATTTTTCCTTCTATGTTTTTTGTTTGTTTGGTAGTGTTCTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATTTTTCCTTCTATGTTTTTTGTTTGTTTGGTAGTGTTCTAGG  900

seq1  TCTTTCTCTTTAAAA-TTTTTATACATTTCTATATTTGAAATAATTTGTT  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTTTAAAATTTTTTATACATTTCTATATTTGAAATAATTTGTT  950

seq1  TTTTAAAATAAGCAGATATCTCTTTTGGGG-AATGAGGAATGGTGGGAAT  998
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  TTTTAAAATAAGCAGATATCTCTTTTGGGGAAATGAGAAATGGTGGGAAT  1000

seq1  CAAGATTTACTGTTAAGTGAAAGAAGTTGTTTAGTAGATTAAAACAAAAT  1048
      | ||||||||||||||||||||| || |||||||||||||||    ||||
seq2  C-AGATTTACTGTTAAGTGAAAG-AGGTGTTTAGTAGATTAA---CAAAT  1045

seq1  AAAAAATGAGAGATCCTTTATTTATTTATTTATTTAGCCTTGGGTATACG  1098
      |||||  ||||||||  ||| ||||    ||||| |||| ||||||||||
seq2  AAAAATGGAGAGATC--TTAATTAT---ATTATTAAGCC-TGGGTATACG  1089

seq1  ATCTTTTTTATGTCTGTTAAATTTGGTTTGTAAGTACTTTATTAAGAACT  1148
      |   |||||||| ||||  || ||||  ||||  |||  |||  ||| ||
seq2  AATCTTTTTATGGCTGT--AAGTTGG--TGTAGTTAC-CTAT--AGACCT  1132

seq1  TTAGAAAAAAAGAACTTGAG-TTTA--CAG-TTTTCTCT  1183
      |    ||||||||||||||| ||||  |||  |||||||
seq2  T---GAAAAAAGAACTTGAGATTTAACCAGAATTTCTCT  1168


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