BAC Information

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BAC

Clone NameB6Ng01-265O04
Chromosome12 (Build37)
Map Location 101,252,403 - 101,416,712
singlet/doubletdoublet
Overlap geneKcnk13, Psmc1, BC002230
Upstream geneEG667779, Ches1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041
Downstream geneCalm1, Ttc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265O04.bB6Ng01-265O04.g
ACCGA069419GA069420
length1,0751,175
definitionB6Ng01-265O04.b B6Ng01-265O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,415,635 - 101,416,712)(101,252,403 - 101,253,600)
sequence
gaattctttcctatgcttgctctggtagttttttttgcacatacttgaga
aatttttttggagttttatttccagtgctcagatcatgttacaaagtttc
taaatcatgtacatttggttttgacctaccccctttattctgtggttgtg
ttaataattcatagatgtggggggatgtggaggcaaacctggtgaaggaa
gaaatgagacggagaacaaggcaccccaagctcctacgaccccttaaaga
gtcctgatccagtgtccacagtgtatgatctgacttgctccgggcgtacc
cgtgagacaacacaaagaacctgaggccagagcagtggctgctttgcttg
tcttcatggaaatctccctgggggatcggggatcggactctctcctgcag
gctcgtggtcaggtgagtcagattctgctaaacaacaatagttacactct
gatttggccttgaatacataaacatacccaaattggctaaaaagctacat
ataagctcatgtaataaacaataaagttagatctgcactctgatgctcgg
ctccggagtctgaatccagggcttcgttgtgggcgccatctccactttcc
ccccacttccggtccctgttcccacataacaaatctctgggacccgctgg
atccggagttcttcaaaggtcgttcaaaggccttcgttagcttattaaat
gttactaccaattcagtgccttctgctctttaactattcaatcataaaac
taaacgaccaaaccaagtgctaagatacatgttacagaaccgatactccg
cacaaaggaagtcaccataggaaaggtacttcacagagttcttccatgag
gttcaagttgcatggagaaagggtagacctttgagttaactgaagccgag
ctttggggaggaactgcaatgggtacagttttagtgtcaaaatgtagagc
tggtagctgtctaatttcatggccatctgtttaatttccaaagttgggct
tacttctctctccccatgaaggttctagtgcttaggttcatctatactcc
atgctaggctttaagtgccccacca
gaattcagtagtacttgacagtgttggatcattaatggtaaggaatatac
tgtatttgtggacaatactgaagaaggtagaaagtatattgtaggagccc
accctgtgttctagtttgatattttttctgtgactttaaatatattctcc
aataagctctttttttttccagccagacacaatagtaaatgtctgtggcc
ccagttttattttgttttttgggttttttttgtggggggagctctatggc
agaaagaccataaaaaacaaaactaggaaagtcttacagatgtctctccc
agagatgtctgtagaatgtggggagccttctgcctctcctggatagtata
aggagttctgtgtatctggagctaggccagcaccagagcagccctctttg
cgtgttcctctcagagctgaggaaataacatttgtcctacttgggcacag
gtctctctgctccacatgccacacatggccatggtacattaaagctatct
aacgtctgaggggacacttttcacaaagtgcacctgaagctgtgaatgtt
ttctgaaaatacagaaaaacacatcatagaaacccaatggagttgaggtc
agtgagggcctgggctaagggcttgcccatgggcctgtgggaatccaacc
ctggcccatgctttaaaataagacggccatttagaatacctttccacgtg
agacacaatttcaaatcaatctatacacggaagttaaaacaggtgctgtc
ccccgccgtccctagaggaaaaacagtaaccaggcatctaatcttcaaca
atagactcagcacaaatattgaagtccttcctaaggtgggtaagtaacct
gtcttcaaagaaaattgattctttcattctgaggaagattttgcaatttt
ccaaacagcaattttcttctcatccagagagagtcaattggtggtttaca
aaagaaaaaaaaaaaaaaagttagacattatccacctggtgtattttgtt
ctggctgtgctcttcattcagctaggtctcctatgcagctgctgtctgga
ggtgctctcatcttctatcaagtctctcatctgtccctgttcaccaatgg
tctcgcgtgtgtgtggactcaatatggacatcatcagtttgacgttggta
tgaatatacttcgacagggcatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_101415635_101416712
seq2: B6Ng01-265O04.b_49_1123 (reverse)

seq1  TGGTGGGGCACTTAAAAGCCTAGCATGGGAGTATAGAATTGAACTTAAGG  50
      ||||||||||||| |||||||||||| ||||||||||  ||||| ||| |
seq2  TGGTGGGGCACTT-AAAGCCTAGCAT-GGAGTATAGA--TGAACCTAA-G  45

seq1  CACTAGAACCTTCATGGGGAAGAAGAGA-AAGTAAGCCAAACTTT-GAAA  98
      |||||||||||||||||||    ||||| ||||||||| |||||| ||||
seq2  CACTAGAACCTTCATGGGG----AGAGAGAAGTAAGCCCAACTTTGGAAA  91

seq1  TTAAACAGATGGCCATGAAATTAGACAGCTA-CAGCTCTACATTTTGACA  147
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTAAACAGATGGCCATGAAATTAGACAGCTACCAGCTCTACATTTTGACA  141

seq1  CTAAAACTGTA-CCATTGCAGTTCCTCCCCAAAGCTCGGCTTCAGTTAAC  196
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTGTACCCATTGCAGTTCCTCCCCAAAGCTCGGCTTCAGTTAAC  191

seq1  TC-AAGGTCTACCC-TTCTCCATGCAACTTGAACCTCATGGAAGAACTCT  244
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTCTACCCTTTCTCCATGCAACTTGAACCTCATGGAAGAACTCT  241

seq1  GTGAAGTACCTTTCCTATGGTGACTTCCTTTGTGCGGAGTATCGGTTCTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTACCTTTCCTATGGTGACTTCCTTTGTGCGGAGTATCGGTTCTG  291

seq1  TAACATGTATCTTAGCACTTGGTTTGGTCGTTTAGTTTTATGATTGAATA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGTATCTTAGCACTTGGTTTGGTCGTTTAGTTTTATGATTGAATA  341

seq1  GTTAAAGAGCAGAAGGCACTGAATTGGTAGTAACATTTAATAAGCTAACG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGAGCAGAAGGCACTGAATTGGTAGTAACATTTAATAAGCTAACG  391

seq1  AAGGCCTTTGAACGACCTTTGAAGAACTCCGGATCCAGCGGGTCCCAGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTTGAACGACCTTTGAAGAACTCCGGATCCAGCGGGTCCCAGAG  441

seq1  ATTTGTTATGTGGGAACAGGGACCGGAAGTGGGGGGAAAGTGGAGATGGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTATGTGGGAACAGGGACCGGAAGTGGGGGGAAAGTGGAGATGGC  491

seq1  GCCCACAACGAAGCCCTGGATTCAGACTCCGGAGCCGAGCATCAGAGTGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAACGAAGCCCTGGATTCAGACTCCGGAGCCGAGCATCAGAGTGC  541

seq1  AGATCTAACTTTATTGTTTATTACATGAGCTTATATGTAGCTTTTTAGCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAACTTTATTGTTTATTACATGAGCTTATATGTAGCTTTTTAGCC  591

seq1  AATTTGGGTATGTTTATGTATTCAAGGCCAAATCAGAGTGTAACTATTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGGTATGTTTATGTATTCAAGGCCAAATCAGAGTGTAACTATTGT  641

seq1  TGTTTAGCAGAATCTGACTCACCTGACCACGAGCCTGCAGGAGAGAGTCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGCAGAATCTGACTCACCTGACCACGAGCCTGCAGGAGAGAGTCC  691

seq1  GATCCCCGATCCCCCAGGGAGATTTCCATGAAGACAAGCAAAGCAGCCAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCGATCCCCCAGGGAGATTTCCATGAAGACAAGCAAAGCAGCCAC  741

seq1  TGCTCTGGCCTCAGGTTCTTTGTGTTGTCTCACGGGTACGCCCGGAGCAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGCCTCAGGTTCTTTGTGTTGTCTCACGGGTACGCCCGGAGCAA  791

seq1  GTCAGATCATACACTGTGGACACTGGATCAGGACTCTTTAAGGGGTCGTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATCATACACTGTGGACACTGGATCAGGACTCTTTAAGGGGTCGTA  841

seq1  GGAGCTTGGGGTGCCTTGTTCTCCGTCTCATTTCTTCCTTCACCAGGTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTGGGGTGCCTTGTTCTCCGTCTCATTTCTTCCTTCACCAGGTTT  891

seq1  GCCTCCACATCCCCCCACATCTATGAATTATTAACACAACCACAGAATAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACATCCCCCCACATCTATGAATTATTAACACAACCACAGAATAA  941

seq1  AGGGGGTAGGTCAAAACCAAATGTACATGATTTAGAAACTTTGTAACATG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTAGGTCAAAACCAAATGTACATGATTTAGAAACTTTGTAACATG  991

seq1  ATCTGAGCACTGGAAATAAAACTCCAAAAAAATTTCTCAAGTATGTGCAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGCACTGGAAATAAAACTCCAAAAAAATTTCTCAAGTATGTGCAA  1041

seq1  AAAAAACTACCAGAGCAAGCATAGGAAAGAATTC  1078
      ||||||||||||||||||||||||||||||||||
seq2  AAAAAACTACCAGAGCAAGCATAGGAAAGAATTC  1075

seq1: chr12_101252403_101253600
seq2: B6Ng01-265O04.g_67_1241

seq1  GAATTCAGTAGTACTTGACAGTGTTGGATCATTAATGGTAAGGAATATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGTACTTGACAGTGTTGGATCATTAATGGTAAGGAATATAC  50

seq1  TGTATTTGTGGACAATACTGAAGAAGGTAGAAAGTATATTGTAGGAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTGGACAATACTGAAGAAGGTAGAAAGTATATTGTAGGAGCCC  100

seq1  ACCCTGTGTTCTAGTTTGATATTTTTTCTGTGACTTTAAATATATTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTGTTCTAGTTTGATATTTTTTCTGTGACTTTAAATATATTCTCC  150

seq1  AATAAGCTCTTTTTTTTTCCAGCCAGACACAATAGTAAATGTCTGTGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTCTTTTTTTTTCCAGCCAGACACAATAGTAAATGTCTGTGGCC  200

seq1  CCAGTTTTATTTTGTTTTTTGGGTTTTTTTTGTGGGGGGAGCTCTATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTTATTTTGTTTTTTGGGTTTTTTTTGTGGGGGGAGCTCTATGGC  250

seq1  AGAAAGACCATAAAAAACAAAACTAGGAAAGTCTTACAGATGTCTCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACCATAAAAAACAAAACTAGGAAAGTCTTACAGATGTCTCTCCC  300

seq1  AGAGATGTCTGTAGAATGTGGGGAGCCTTCTGCCTCTCCTGGATAGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTCTGTAGAATGTGGGGAGCCTTCTGCCTCTCCTGGATAGTATA  350

seq1  AGGAGTTCTGTGTATCTGGAGCTAGGCCAGCACCAGAGCAGCCCTCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTCTGTGTATCTGGAGCTAGGCCAGCACCAGAGCAGCCCTCTTTG  400

seq1  CGTGTTCCTCTCAGAGCTGAGGAAATAACATTTGTCCTACTTGGGCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCCTCTCAGAGCTGAGGAAATAACATTTGTCCTACTTGGGCACAG  450

seq1  GTCTCTCTGCTCCACATGCCACACATGGCCATGGTACATTAAAGCTATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTGCTCCACATGCCACACATGGCCATGGTACATTAAAGCTATCT  500

seq1  AACGTCTGAGGGGACACTTTTCACAAAGTGCACCTGAAGCTGTGAATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCTGAGGGGACACTTTTCACAAAGTGCACCTGAAGCTGTGAATGTT  550

seq1  TTCTGAAAATACAGAAAAACACATCATAGAAACCCAATGGAGTTGAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAATACAGAAAAACACATCATAGAAACCCAATGGAGTTGAGGTC  600

seq1  AGTGAGGGCCTGGGCTAAGGGCTTGCCCATGGGCCTGTGGGAATCCAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGGCCTGGGCTAAGGGCTTGCCCATGGGCCTGTGGGAATCCAACC  650

seq1  CTGGCCCATGCTTTAAAATAAGACGGCCATTTAGAATACCTTTCCACGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCATGCTTTAAAATAAGACGGCCATTTAGAATACCTTTCCACGTG  700

seq1  AGACACAATTTCAAATCAATCTATACACGGAAGTTAAAACAGGTGCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAATTTCAAATCAATCTATACACGGAAGTTAAAACAGGTGCTGTC  750

seq1  CCCCGCCGTCCCTAGAGGAAAAACAGTAACCAGGCATCTAATCTTCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCGTCCCTAGAGGAAAAACAGTAACCAGGCATCTAATCTTCAACA  800

seq1  ATAGACTCAGCACAAATATTGAAGTCCTTCCTAAGGTGGGTAAGTAACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTCAGCACAAATATTGAAGTCCTTCCTAAGGTGGGTAAGTAACCT  850

seq1  GTCTTCAAAGAAAATTGATTCTTTCATTCTGAGGAAGATTTTGCAATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAAAGAAAATTGATTCTTTCATTCTGAGGAAGATTTTGCAATTTT  900

seq1  CCAAACAGCAATTTTCTTCTCATCCCAGAGAGAAGTCAATTGGTGGTTTA  950
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  CCAAACAGCAATTTTCTTCTCAT-CCAGAGAG-AGTCAATTGGTGGTTTA  948

seq1  CAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTAGACATTAAATCACCT-G  999
      |        |||| ||||||||||||||||||||||||| |  ||||| |
seq2  C--------AAAAGAAAAAAAAAAAAAAAGTTAGACATT-ATCCACCTGG  989

seq1  TGTATTTTGTTCTGGCTGTGCTCTTCATTCAAGCTAGGTCTCCTATGCCA  1049
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  TGTATTTTGTTCTGGCTGTGCTCTTCATTC-AGCTAGGTCTCCTATG-CA  1037

seq1  GCTGCTGTCCTTGGAGTGGCTCTCATC-TCTATCAAAGTCTCTCATCCTG  1098
      |||||||||  |||||  ||||||||| |||||| ||||||||||| |||
seq2  GCTGCTGTC--TGGAGGTGCTCTCATCTTCTATC-AAGTCTCTCAT-CTG  1083

seq1  TTCCCTG-TCACC-ATGGGCTCGC-TGTGTGTGGACTTCAAATAT-GACA  1144
       |||||| ||||| |||| ||||| ||||||||||||   ||||| ||||
seq2  -TCCCTGTTCACCAATGGTCTCGCGTGTGTGTGGACT--CAATATGGACA  1130

seq1  TACAACACAGGTTTTTGACTGTTTGGTGAATGAATA-ACTCAGACAAGGC  1193
      | || ||      ||||||   |||||  ||||||| |||  |||| |||
seq2  T-CATCA-----GTTTGAC--GTTGGT--ATGAATATACTTCGACAGGGC  1170

seq1  ATGGA  1198
      |||||
seq2  ATGGA  1175