BAC Information

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BAC

Clone NameB6Ng01-266K23
Chromosome15 (Build37)12 (Build37)
Map Location 82,096,268 - 82,097,45027,152,895 - 27,153,328
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik
Downstream geneSept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266K23.bB6Ng01-266K23.g
ACCGA070021GA070022
length1,182589
definitionB6Ng01-266K23.b B6Ng01-266K23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,096,268 - 82,097,450)(27,152,895 - 27,153,328)
sequence
gaattcagcatcctctacatgttaggcacaccatccaccaccaagctgcc
tacctccagagtcatcggttttcatagctcccatagagtgagggcagtgt
acagtaacagcgctgggcgagacttgaggctccccgaggtcactctcagc
ctgaaatgtgtccataccactgcttaccaaacagtcctggctcctcagct
ctcagtgtgccatagaagtttaccttcctgccttctagtaatgggcggct
catccagcttgttctggccaatgagttctaattaaatcaaagccattagt
ggctggcaaggggattcattaatctgcagtttgtcacaacccctggcaat
aatgacctggagggccctagagcaaaggtgacgtgggacatagttggttc
atggtgttgtggacaggagccatgaatgagaaactagttcttagtgtcac
ggcctctagggttttggaagtttgtcacccatgctatctaagcctacccc
tattatagaacaatgtggggcccagaaagacaaagagatgttccaattca
cgtggctgcagaacacacaagtttgagaggtatcatagcacgcactcttt
gtcaggggggccaccgtaaagattggagtgaaggtgtctgtttttggagg
acccttgaaagcgtctcagtgtttggtgggaaaatgcacaggtgcacagt
accatttctggccactagagggcagctggacccaagtttgtaattgaggt
ggggctgcggcaaccaactctgctaagccccacgtttggaaactgtgggt
ggccaccagaaaataaatgtgggagtggagaaaactgggcaacagcaaaa
gctttctttttcttttcttttctttcttgatagtgtttctgtgtatagcc
ctggctgtcctggaactcactttgtagaccaggctggcctcgaactcaga
aatcccggctgtctctgcctcccgagcgctgggattaaaggcgtgcgcca
ccaccgccagcagcaaaggtttctgaatgcacaacaccctgaatcatcga
actcaaatgaatctgggctgtttctgcacttctttgtgtgtgtagtatgg
acgttcgattgtgcacacttgaacggaccgcatgctttacactgcccgag
gaaatacaccttaaggcttcagacgctatggt
gaattcagaatggccacttcaaaagatttacacccagtttctaggaactg
gaaagatatctcagatataacaaagtgtgtgataacttaaatgtgtggaa
ctagctctttaagccctcacctttcttactctctaggccttcttctctct
ctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgcgcacacacacagatataaatatacatat
atatagagagagagacacacaaatatgagtgtgtctcttttgtcactcaa
aatgtgttatttctctcttttttgtgaaaaaaagtgtgtgtttctctccc
cccgcgcgcgcgctctctatatactctcgtgtgctcgcgctctatcagtg
acaggggggggctctatatacagagggcgtgcacgcgcgaggaaaatata
tgtgcttacacacacagtgtgtatcgctttgctagatgggggtctcgtgt
gtgcacacgtgtggtgtctcacagtgtgtgtgaatatgagagacagatac
tcgctctctttagtgtggtcacacacacagagagacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_82096268_82097450
seq2: B6Ng01-266K23.b_49_1230

seq1  GAATTCAGCATCCTCTACATGTTAGGCACACCATCCACCACCAAGCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATCCTCTACATGTTAGGCACACCATCCACCACCAAGCTGCC  50

seq1  TACCTCCAGAGTCATCGGTTTTCATAGCTCCCATAGAGTGAGGGCAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCAGAGTCATCGGTTTTCATAGCTCCCATAGAGTGAGGGCAGTGT  100

seq1  ACAGTAACAGCGCTGGGCGAGACTTGAGGCTCCCCGAGGTCACTCTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACAGCGCTGGGCGAGACTTGAGGCTCCCCGAGGTCACTCTCAGC  150

seq1  CTGAAATGTGTCCATACCACTGCTTACCAAACAGTCCTGGCTCCTCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGTGTCCATACCACTGCTTACCAAACAGTCCTGGCTCCTCAGCT  200

seq1  CTCAGTGTGCCATAGAAGTTTACCTTCCTGCCTTCTAGTAATGGGCGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTGCCATAGAAGTTTACCTTCCTGCCTTCTAGTAATGGGCGGCT  250

seq1  CATCCAGCTTGTTCTGGCCAATGAGTTCTAATTAAATCAAAGCCATTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGCTTGTTCTGGCCAATGAGTTCTAATTAAATCAAAGCCATTAGT  300

seq1  GGCTGGCAAGGGGATTCATTAATCTGCAGTTTGTCACAACCCCTGGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCAAGGGGATTCATTAATCTGCAGTTTGTCACAACCCCTGGCAAT  350

seq1  AATGACCTGGAGGGCCCTAGAGCAAAGGTGACGTGGGACATAGTTGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTGGAGGGCCCTAGAGCAAAGGTGACGTGGGACATAGTTGGTTC  400

seq1  ATGGTGTTGTGGACAGGAGCCATGAATGAGAAACTAGTTCTTAGTGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTTGTGGACAGGAGCCATGAATGAGAAACTAGTTCTTAGTGTCAC  450

seq1  GGCCTCTAGGGTTTTGGAAGTTTGTCACCCATGCTATCTAAGCCTACCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTAGGGTTTTGGAAGTTTGTCACCCATGCTATCTAAGCCTACCCC  500

seq1  TATTATAGAACAATGTGGGGCCCAGAAAGACAAAGAGATGTTCCAATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAGAACAATGTGGGGCCCAGAAAGACAAAGAGATGTTCCAATTCA  550

seq1  CGTGGCTGCAGAACACACAAGTTTGAGAGGTATCATAGCACGCACTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTGCAGAACACACAAGTTTGAGAGGTATCATAGCACGCACTCTTT  600

seq1  GTCAGGGGGGCCACCGTAAAGATTGGAGTGAAGGTGTCTGTTTTTGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGGGGCCACCGTAAAGATTGGAGTGAAGGTGTCTGTTTTTGGAGG  650

seq1  ACCCTTGAAAGCGTCTCAGTGTTTGGTGGGAAAATGCACAGGTGCACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGAAAGCGTCTCAGTGTTTGGTGGGAAAATGCACAGGTGCACAGT  700

seq1  ACCATTTCTGGCCACTAGAGGGCAGCTGGACCCAAGTTTGTAATTGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCTGGCCACTAGAGGGCAGCTGGACCCAAGTTTGTAATTGAGGT  750

seq1  GGGGCTGCGGCAACCAACTCTGCTAAGCCCCACGTTTGGAAACTGTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGCGGCAACCAACTCTGCTAAGCCCCACGTTTGGAAACTGTGGGT  800

seq1  GGCCACCAGAAAATAAATGTGGGAGTGGAGAAAACTGGGCAACAGCAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCAGAAAATAAATGTGGGAGTGGAGAAAACTGGGCAACAGCAAAA  850

seq1  GCTTTCTTTTTCTTTTCTTTTCTTTCTTGATAGTGTTTCTGTGTATAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTTTTCTTTTCTTTTCTTTCTTGATAGTGTTTCTGTGTATAGCC  900

seq1  CTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGA  950

seq1  AAT-CCGGCTGTCTCTGCCTCCCGAGCGCTGGGATTAAAGGCGTGCGCCA  999
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCGGCTGTCTCTGCCTCCCGAGCGCTGGGATTAAAGGCGTGCGCCA  1000

seq1  CCACCGCCCAGCAGCAAAAGGTTTCTGAATGCACAACAACCCTGAATCAT  1049
      |||||| |||||||| ||||||||||||||||||||| ||||||||||||
seq2  CCACCG-CCAGCAGC-AAAGGTTTCTGAATGCACAAC-ACCCTGAATCAT  1047

seq1  CGAACTCAAAATGAATCTGGGCTGTTTCTGCCAACT--CTTGTGTGT-TA  1096
      ||||||| |||||||||||||||||||||||  |||   |||||||| ||
seq2  CGAACTC-AAATGAATCTGGGCTGTTTCTGC--ACTTCTTTGTGTGTGTA  1094

seq1  GTATTGAACGTTCGA-TGTGCACACTTTGACCGA-CGCATGCCATACACT  1144
      ||| || |||||||| |||||||||||  || || |||||||  ||||||
seq2  GTA-TGGACGTTCGATTGTGCACACTTGAACGGACCGCATGCTTTACACT  1143

seq1  G-CCGAGGAATACCACCTAAAAGCTCACAGACGCTATGGT  1183
      | ||||||||   ||||| || |||  |||||||||||||
seq2  GCCCGAGGAAATACACCTTAAGGCT-TCAGACGCTATGGT  1182

seq1: chr12_27152895_27153328
seq2: B6Ng01-266K23.g_210_655 (reverse)

seq1  TGTGTCTCTCTGTGTGTGATTGTGTGTGTGTGACCAAA------------  38
      ||||||||||            |||||||||||||| |            
seq2  TGTGTCTCTC------------TGTGTGTGTGACCACACTAAAGAGAGCG  38

seq1  AATATTTATTTCCAA----CAATTATAATCTGAGACTCTAGCAGGTCTGC  84
      | ||| | | ||  |    ||   | | | |||||| | | || || |||
seq2  AGTATCTGTCTCTCATATTCACACACACTGTGAGACACCA-CACGTGTGC  87

seq1  CAGGCAGTAATTTCAC-AGAGGTCCCTGTAGCAAACTGCCGGAGGTGTTG  133
          ||       ||| |||   || | |||||||  ||   |     ||
seq2  ---ACA-------CACGAGACCCCCATCTAGCAAA--GCGATACACACTG  125

seq1  TGTTCCTTGGACAGCTCA------CTCCAGGGTCAGTTGTGCATTGCATC  177
      |||    || | ||| ||       |||    ||    |||||   | ||
seq2  TGT---GTGTA-AGCACATATATTTTCC----TCGCGCGTGCACGCCCTC  167

seq1  TTTTT-----GCTCTACCAACACAACTGACAGTCTGCTCACCCTGGCCTT  222
      | | |     || |  ||    | ||||| ||   ||   |         
seq2  TGTATATAGAGCCCCCCCCTGTC-ACTGATAGAGCGCGAGC---------  207

seq1  ACACCTTCCTTGTGTGGGGATAAATCTTAAGCTGGGAGCCTCACTGAAAC  272
      ||||       || |   || |   |    || ||| |    |  |||||
seq2  ACAC---GAGAGTATATAGAGAGCGCGCGCGCGGGGGG----AGAGAAAC  250

seq1  ACCTATCTTTACTGTGAACCAGCAAGGTTGAGACGGTCTTAAGACTTCTA  322
      ||  | ||||  | |  || |  |||   || |      ||| || | | 
seq2  ACACA-CTTT--TTTTCACAAAAAAGAGAGAAA------TAACACATTTT  291

seq1  AA---ACATAGCCAACACACACACA---------CACACACAC-------  353
       |   ||| |    |||||| || |         | | | | |       
seq2  GAGTGACAAAAGAGACACACTCATATTTGTGTGTCTCTCTCTCTATATAT  341

seq1  ------------------------ACACACACACACACACACACACACAC  379
                               | |||||||||||||||||||||||
seq2  ATGTATATTTATATCTGTGTGTGTGCGCACACACACACACACACACACAC  391

seq1  ACACACACACAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAG  429
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  441

seq1  AGAGA  434
      |||||
seq2  AGAGA  446