BAC Information

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BAC

Clone NameB6Ng01-266L15
Chromosome12 (Build37)
Map Location 85,475,126 - 85,638,333
singlet/doubletdoublet
Overlap geneDnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6
Downstream geneZfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266L15.bB6Ng01-266L15.g
ACCGA070049GA070050
length963975
definitionB6Ng01-266L15.b B6Ng01-266L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,475,126 - 85,476,066)(85,637,352 - 85,638,333)
sequence
gaattcattaaggattttatttttccatagtcttttaaaggacagttacc
cagagttagatccgggcccaccagacatttccataaagggctatgtaaat
tgtcagggctgaaggaggcacacaaatagaaacagagtgggtcctgccca
gcactttgttttaaaggaaaggatcattgcatttgtctgttactgaaaat
ctttgtgcaaatggtgattgcctaaaatttaagagatggtataatataat
aacttttatgctaatagaaagatcaagtgtttaatcccagcacttgggag
gcagaggcaggcggatttctgagttcgaggccacctggtctacagagtga
gttccaggacagccagggctacacagagaaaccctgtctcggaaaagaca
aaaaaaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
gaaggaaggaaggaaggaaggaaggaaggaaggaaggaagaaagaaaaag
aaaagaaagaaagatcaagtgtttaaaactgaattttatgtatcaaaatg
ataagatgaggcctaaggacatagctctactggtaaagtgttttctgtgc
agcataagtgggttgtgtttgactcttaaaaagcgtgatagtgtgttgac
cctaatccagagctggggaagtcgagactggatcccctgaggtgtttctg
ggcagccagcccagccaaattgatgatccccaagccaatgggagatcccc
aagcatagttctcaaagaaactagggtaggcagctccctaaggagtgaca
cacacgcacacaggaatgaataatgcggactgaggtttttcgtagtgaac
ctgagaagatatgatatgattaaataaatattagcaaaatggggcattgg
tatgttcttgaaatatattgagcacttagaattgcaaaattcttctctgg
tccaattttttct
gaattcattaaggaaaccatctaaaggccagcttttccttttggaagttt
taaagatgtgtttgtaccatcagcactggtggggctgagggctggagtcc
agcagatcctggagcttgctcaccaatcagtctggctgatcagaatcccc
aggttcagtacgggaccctgtctcataaagtggagtgggccagacgtgac
tcagacaataaagtctgacaacctgagtttgatccccgagcccacataaa
cgaaggagagaactgactccatagagctatcctctgacctccacatgtat
gtcatagcacatgcatgcttgcacacaaatcacacatatgcacatacaca
cacatactgatttaaaaaataaagtggggctggagagatggctcagtagt
tataattgatacaaattatttacaaattcaaggaccaaaggaaaaaccct
ccaatttataagtccagtgagatggcttggcgggtaaaggtgcttgctgc
aaacactgtcagtccaagatagataaccaggactcaaatggtagaagggg
agcatagactccaacctgcagattttcctttggcctccataagtgtgctg
tggcacatgtacacacacaaacacacacacacacacacactaaaactttt
ttattacggagataagggctcactgtaactcaagctagcctcaaactttc
gtgaccttcctgcctcagctctcccagtgcagggatggctgggatgcagg
tatgaggcaccatgcccactcatgggcagctgatttccaacaaaggttct
atgagcaaatacagtcatttcaacaagtggtactgacaccattgtatgtc
tacctgcaaaagacagaagttgaaccctgtgatgattcacctggggggtc
agtgaggttgtagttcatgttaaagtgcttgcccaacatcagacttccca
ggatgtggggggggggggggggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_85475126_85476066
seq2: B6Ng01-266L15.b_46_1008

seq1  GAATTCATTAAGGATTTTATTTTTCCATAGTCTTTTAAAGGACAGTTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAGGATTTTATTTTTCCATAGTCTTTTAAAGGACAGTTACC  50

seq1  CAGAGTTAGATCCGGGCCCACCAGACATTTCCATAAAGGGCTATGTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTAGATCCGGGCCCACCAGACATTTCCATAAAGGGCTATGTAAAT  100

seq1  TGTCAGGGCTGAAGGAGGCACACAAATAGAAACAGAGTGGGTCCTGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGCTGAAGGAGGCACACAAATAGAAACAGAGTGGGTCCTGCCCA  150

seq1  GCACTTTGTTTTAAAGGAAAGGATCATTGCATTTGTCTGTTACTGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTGTTTTAAAGGAAAGGATCATTGCATTTGTCTGTTACTGAAAAT  200

seq1  CTTTGTGCAAATGGTGATTGCCTAAAATTTAAGAGATGGTATAATATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCAAATGGTGATTGCCTAAAATTTAAGAGATGGTATAATATAAT  250

seq1  AACTTTTATGCTAATAGAAAGATCAAGTGTTTAATCCCAGCACTTGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTATGCTAATAGAAAGATCAAGTGTTTAATCCCAGCACTTGGGAG  300

seq1  GCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCACCTGGTCTACAGAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCACCTGGTCTACAGAGTGA  350

seq1  GTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGGAAAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGGAAAAGACA  400

seq1  AAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  450

seq1  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAAAG  500

seq1  AAAAGAAAGAAAGATCAAGTGTTTAAAACTGAATTTTATGTATCAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGAAAGATCAAGTGTTTAAAACTGAATTTTATGTATCAAAATG  550

seq1  ATAAGATGAGGCCTAAGGACATAGCTCTACTGGTAAAGTGTTTTCTGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGAGGCCTAAGGACATAGCTCTACTGGTAAAGTGTTTTCTGTGC  600

seq1  AGCATAAGTGGGTTGTGTTTGACTCTTAAAAAGCGTGATAGTGTG-TGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCATAAGTGGGTTGTGTTTGACTCTTAAAAAGCGTGATAGTGTGTTGAC  650

seq1  CCTAATCCAGAGCTGGGGAAGTCGAGACTGGAT-CCCTGAGGTG-TTCTG  697
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  CCTAATCCAGAGCTGGGGAAGTCGAGACTGGATCCCCTGAGGTGTTTCTG  700

seq1  GGCAGCCAGCCCAGCCAAATTGATGATCCCCAAGCCAAT-GGAGAT-CCC  745
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  GGCAGCCAGCCCAGCCAAATTGATGATCCCCAAGCCAATGGGAGATCCCC  750

seq1  AAGCATAGTTCTCAAAG-AACTA-GGTAGGCAGCT-CCTAAGGAGTGACA  792
      ||||||||||||||||| ||||| ||||||||||| ||||||||||||||
seq2  AAGCATAGTTCTCAAAGAAACTAGGGTAGGCAGCTCCCTAAGGAGTGACA  800

seq1  CACACGCACACAGGAATG-ATAATGCGGACTGAGG-TTTTCGTAGTGAAC  840
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  CACACGCACACAGGAATGAATAATGCGGACTGAGGTTTTTCGTAGTGAAC  850

seq1  CTGAG-AGATATGATAGGA-TAAATAAATA-TAGCAAAAT-GGGCA-TGG  885
      ||||| |||||||||| || |||||||||| ||||||||| ||||| |||
seq2  CTGAGAAGATATGATATGATTAAATAAATATTAGCAAAATGGGGCATTGG  900

seq1  TATGTTCT--GAATATA-TGAGCACTTAGAA-TGCAAAATTC-TCTCTG-  929
      ||||||||   |||||| ||||||||||||| |||||||||| |||||| 
seq2  TATGTTCTTGAAATATATTGAGCACTTAGAATTGCAAAATTCTTCTCTGG  950

seq1  -TCAATTTTTTCT  941
        |||||||||||
seq2  TCCAATTTTTTCT  963

seq1: chr12_85637352_85638333
seq2: B6Ng01-266L15.g_68_1042 (reverse)

seq1  TCTCCCTGCCTTCCCCCCCCCCCCAACATCCTGGGAAGTCTGATGTTGGG  50
      ||||||      |||||||||||| |||||||||||||||||||||||||
seq2  TCTCCC------CCCCCCCCCCCCCACATCCTGGGAAGTCTGATGTTGGG  44

seq1  CAAGCACTTTAACATTGAACTACAACCTCACTGACCCCCCAGGTGAATCA  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAAGCACTTTAACA-TGAACTACAACCTCACTGACCCCCCAGGTGAATCA  93

seq1  TCACAGGGTTCAACTTCTGTCTTTTGCAGGTAGACATACAATGGTGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGTTCAACTTCTGTCTTTTGCAGGTAGACATACAATGGTGTCAG  143

seq1  TACCACTTGTTGAAATGACTGTATTTGCTCATAGAACCTTTGTTGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTTGTTGAAATGACTGTATTTGCTCATAGAACCTTTGTTGGAAAT  193

seq1  CAGCTGCCCATGAGTGGGCATGGTGCCTCATACCTGCATCCCAGCCATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCCATGAGTGGGCATGGTGCCTCATACCTGCATCCCAGCCATCC  243

seq1  CTGCACTGGGAGAGCTGAGGCAGGAAGGTCACGAAAGTTTGAGGCTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGGGAGAGCTGAGGCAGGAAGGTCACGAAAGTTTGAGGCTAGCT  293

seq1  TGAGTTACAGTGAGCCCTTATCTCCGTAATAAAAAAGTTTTAGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACAGTGAGCCCTTATCTCCGTAATAAAAAAGTTTTAGTGTGTGT  343

seq1  GTGTGTGTGTGTTTGTGTGTGTACATGTGCCACAGCACACTTATGGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTTTGTGTGTGTACATGTGCCACAGCACACTTATGGAGGC  393

seq1  CAAAGGAAAATCTGCAGGTTGGAGTCTATGCTCCCCTTCTACCATTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAAAATCTGCAGGTTGGAGTCTATGCTCCCCTTCTACCATTTGAG  443

seq1  TCCTGGTTATCTATCTTGGACTGACAGTGTTTGCAGCAAGCACCTTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTATCTATCTTGGACTGACAGTGTTTGCAGCAAGCACCTTTACC  493

seq1  CGCCAAGCCATCTCACTGGACTTATAAATTGGAGGGTTTTTCCTTTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAGCCATCTCACTGGACTTATAAATTGGAGGGTTTTTCCTTTGGTC  543

seq1  CTTGAATTTGTAAATAATTTGTATCAATTATAACTACTGAGCCATCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTTGTAAATAATTTGTATCAATTATAACTACTGAGCCATCTCTC  593

seq1  CAGCCCCACTTTATTTTTTAAATCAGTATGTGTGTGTATGTGCATATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCACTTTATTTTTTAAATCAGTATGTGTGTGTATGTGCATATGTG  643

seq1  TGATTTGTGTGCAAGCATGCATGTGCTATGACATACATGTGGAGGTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTGTGCAAGCATGCATGTGCTATGACATACATGTGGAGGTCAGA  693

seq1  GGATAGCTCTATGGAGTCAGTTCTCTCCTTCGTTTATGTGGGCTCGGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCTCTATGGAGTCAGTTCTCTCCTTCGTTTATGTGGGCTCGGGGA  743

seq1  TCAAACTCAGGTTGTCAGACTTTATTGTCTGAGTCACGTCTGGCCCACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTCAGGTTGTCAGACTTTATTGTCTGAGTCACGTCTGGCCCACTC  793

seq1  CACTTTATGAGACAGGGTCCCGTACTGAACCTGGGGATTCTGATCAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATGAGACAGGGTCCCGTACTGAACCTGGGGATTCTGATCAGCCA  843

seq1  GACTGATTGGTGAGCAAGCTCCAGGATCTGCTGGACTCCAGCCCTCAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATTGGTGAGCAAGCTCCAGGATCTGCTGGACTCCAGCCCTCAGCC  893

seq1  CCACCAGTGCTGATGGTACAAACACATCTTTAAAACTTCCAAAAGGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGTGCTGATGGTACAAACACATCTTTAAAACTTCCAAAAGGAAAA  943

seq1  GCTGGCCTTTAGATGGTTTCCTTAATGAATTC  982
      ||||||||||||||||||||||||||||||||
seq2  GCTGGCCTTTAGATGGTTTCCTTAATGAATTC  975