BAC Information

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BAC

Clone NameB6Ng01-268M06
Chromosome12 (Build37)
Map Location 10,557,424 - 10,664,183
singlet/doubletdoublet
Overlap genenone
Upstream geneOsr1, LOC382567, Nt5c1b, Rdh14
Downstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268M06.bB6Ng01-268M06.g
ACCGA071537GA071538
length1,1931,151
definitionB6Ng01-268M06.b B6Ng01-268M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,557,424 - 10,558,620)(10,663,034 - 10,664,183)
sequence
gaattctgtagctcaactgcacaactctgtagtgtgaactttgtagacaa
caatatcttcagtcatgtcaaaaagttgggcatttgtacaagaaataaat
gaaggtttagaaagtgtaattcccgttgaaaacattatttgacaactgtc
ttgtttttactttatggagattcaaatgttttctactcaattttcaataa
tttacacaaagtgattgtatggcagtatgctacatactagcacaatgtac
attttgctcaaagatggccataacctagggagattattttccacttagtt
ctgttcaatgtaacagcattaaaactcttataattaatgacaaatggctt
gcccctgattttatttgcacccactgaataaaaaaccccagggctttcgt
tctaccaccatacagatcattctttcttccttccttcctttctttcttcc
ttccttcctctccctctccctctccccacctctctctctctctttcttaa
gatttatttgtttgttttatgtatatgaatacactgtagctgtctttaga
caaaccagaagagggcacagatcccattattacagatgattgctgggaat
tgaactcaggacctctggaagagcagtcagtgctcttaaccactgagcca
tctcgccagcctagatcctactttcttctacatctatttcaatattctcc
tcagcaagaaaatctctatctcccaatccacactaccctcacttcgaaca
tgtgcaggccaccctttgtcagactttcatttgaaactcagacagacact
gtctaaacagctcacaaatacattttctgtatggattggactgtcatgca
gtaaatccactgattatcagtgtgcagagtatttggtaaagtatcatttt
atttgcaattaatttatgaaagaaacattagtatcatctccatctcacac
atgagaaaacacagactcatggagagtgtttcttgttcaagatcacgtag
ctagaaaaacaaatccaaccagcggtgcccttctgatttctctgtcctcc
tcatctgtaccccattctgtcaacagaatgctgcttactttacttcaaaa
acacatctgaatatgagtctgttttcccatctcttcaaatgaatgccttg
ttccatcctacctccctgatgcactcagggagtaaaagactgt

gaattctttcctccctgagttgctttggtcatgtgtttaatatagaaatc
aaaattaactgattcagcccatttttttctctaataggtagcaggtattg
gaatgtaggggagagtaggaaaggtaccctttaagtacttccttacaaat
gtgtgttgattaaaaagatcttggcctctgaaggattgactggaagaaat
tcagtgaacattccttttctgtatatgatgaacatttcctgttcattcac
atatcaatcactttttggagccttttgtgtcaggcttaattaagctggaa
acatggatagagaaaaagtcagatgtagtctctaacccctgagaagcttg
aagactttttgaaagagggtgataaattaaaagacacacaaaatagtgtg
gtggttgttcaggcaggagtatgcacagtatgctaatgcgcatgccagag
agagtgataatctaactcagacttcccttggatgtgatgagaccgatgtt
ccacgggatttttcctaactattctaaagcattgtaatgagaaaatagga
ctgaaaattgggtggaggacagatgcatgtgatgactgaggctcaaggac
tgttaataaatggcaagagctgaggcttccagcaagtgtggataggttct
gtgtttgatatctagtctaattatgggatgacaggattgctgagtttaat
gaatttttaaattttaacctccatcccaccctttgccagcatttgttgac
gttgaacatccttatgtagctttgacttagggaaaataaagaatatttct
ctgcacccaaactacgtatacttccattttgtgactattacctccagtta
aaaaaaaaatggtccatgggattctcccagaacattccaacatttagcca
tccccttcccccaaaaccatgacaggtttggttagggcttataattgagt
actgttcttaacccttctaaaggaaaatttaaattttatttatttatttt
atgtacatgaatgttcttctttttttgcacaccagaagaggaaattagat
tgtatacagatgattggtgagccaacaatgtgatgtgggtgatatggaat
tggaactcagacttctgtaagagcaacaggtgccctagaagatcgctagg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10557424_10558620
seq2: B6Ng01-268M06.b_47_1239

seq1  GAATTCTGTAGCTCAACTGCACAACTCTGTAGTGTGAACTTTGTAGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGCTCAACTGCACAACTCTGTAGTGTGAACTTTGTAGACAA  50

seq1  CAATATCTTCAGTCATGTCAAAAAGTTGGGCATTTGTACAAGAAATAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCTTCAGTCATGTCAAAAAGTTGGGCATTTGTACAAGAAATAAAT  100

seq1  GAAGGTTTAGAAAGTGTAATTCCCGTTGAAAACATTATTTGACAACTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTTAGAAAGTGTAATTCCCGTTGAAAACATTATTTGACAACTGTC  150

seq1  TTGTTTTTACTTTATGGAGATTCAAATGTTTTCTACTCAATTTTCAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTACTTTATGGAGATTCAAATGTTTTCTACTCAATTTTCAATAA  200

seq1  TTTACACAAAGTGATTGTATGGCAGTATGCTACATACTAGCACAATGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACAAAGTGATTGTATGGCAGTATGCTACATACTAGCACAATGTAC  250

seq1  ATTTTGCTCAAAGATGGCCATAACCTAGGGAGATTATTTTCCACTTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTCAAAGATGGCCATAACCTAGGGAGATTATTTTCCACTTAGTT  300

seq1  CTGTTCAATGTAACAGCATTAAAACTCTTATAATTAATGACAAATGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAATGTAACAGCATTAAAACTCTTATAATTAATGACAAATGGCTT  350

seq1  GCCCCTGATTTTATTTGCACCCACTGAATAAAAAACCCCAGGGCTTTCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGATTTTATTTGCACCCACTGAATAAAAAACCCCAGGGCTTTCGT  400

seq1  TCTACCACCATACAGATCATTCTTTCTTCCTTCCTTCCTTTCTTTCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCACCATACAGATCATTCTTTCTTCCTTCCTTCCTTTCTTTCTTCC  450

seq1  TTCCTTCCTCTCCCTCTCCCTCTCCCCACCTCTCTCTCTCTCTTTCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTCTCCCTCTCCCTCTCCCCACCTCTCTCTCTCTCTTTCTTAA  500

seq1  GATTTATTTGTTTGTTTTATGTATATGAATACACTGTAGCTGTCTTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTGTTTGTTTTATGTATATGAATACACTGTAGCTGTCTTTAGA  550

seq1  CAAACCAGAAGAGGGCACAGATCCCATTATTACAGATGATTGCTGGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGAAGAGGGCACAGATCCCATTATTACAGATGATTGCTGGGAAT  600

seq1  TGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCA  650

seq1  TCTCGCCAGCCTAGATCCTACTTTCTTCTACATCTATTTCAATATTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCCAGCCTAGATCCTACTTTCTTCTACATCTATTTCAATATTCTCC  700

seq1  TCAGCAAGAAAATCTCTATCTCCCAATCCACACTACCCTCACTTCGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAGAAAATCTCTATCTCCCAATCCACACTACCCTCACTTCGAACA  750

seq1  TGTGCAGGCCACCCTTTGTCAGGACTTTCATTTGAAACTCAGACAGACAC  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTGCAGGCCACCCTTTGTCA-GACTTTCATTTGAAACTCAGACAGACAC  799

seq1  TGTCTAAACAGCTCACAAATACATTTTCTGTATGGATTGGACTGTCATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAACAGCTCACAAATACATTTTCTGTATGGATTGGACTGTCATGC  849

seq1  AGTAAATCCACTGATTATCAGTGTGCAGAGTATTTGGTAAAGTATCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATCCACTGATTATCAGTGTGCAGAGTATTTGGTAAAGTATCATTT  899

seq1  TATTTGCAATTAATTTATGAAAGAAACATTAGTATCATCTCCATCTCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCAATTAATTTATGAAAGAAACATTAGTATCATCTCCATCTCACA  949

seq1  CATGAGAAAACACAGACTCATGGAGAGTGTTTCTTGTTCAAGATCACGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAAAACACAGACTCATGGAGAGTGTTTCTTGTTCAAGATCACGTA  999

seq1  GCTAGAAAAACAAATCCAACCAGCGGTGCCCTTCTGAATTTCTCTGTTCC  1050
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  GCTAGAAAAACAAATCCAACCAGCGGTGCCCTTCTG-ATTTCTCTG-TCC  1047

seq1  TCCTCATCTGTACCCCATTCTGTCAACAG-ATGCTGCTTACTTTACCTC-  1098
      ||||||||||||||||||||||||||||| |||||||||||||||| || 
seq2  TCCTCATCTGTACCCCATTCTGTCAACAGAATGCTGCTTACTTTACTTCA  1097

seq1  AAAACACATCCTGAATATGAGTCTGTTTTCTCATCTCTTCTATTG-ATGC  1147
      ||||||||| |||||||||||||||||||| ||||||||| | || ||||
seq2  AAAACACAT-CTGAATATGAGTCTGTTTTCCCATCTCTTCAAATGAATGC  1146

seq1  CTTGTTTCATTCCCTACTTCTCTGGATGCACTCA-GGAGGAAAAGAGCTG  1196
      |||||| |||  ||||| || || |||||||||| |||| |||||| |||
seq2  CTTGTTCCAT--CCTACCTCCCT-GATGCACTCAGGGAGTAAAAGA-CTG  1192

seq1  T  1197
      |
seq2  T  1193


seq1: chr12_10663034_10664183
seq2: B6Ng01-268M06.g_64_1214 (reverse)

seq1  TCCTGAGCGATCTCTCT-GGGCACTGTTTGCTCTTCCAGAGGTCCTGAGT  49
      |||| |||||||| ||| ||||||   |||||||| |||| || ||||||
seq2  TCCT-AGCGATCT-TCTAGGGCACCTGTTGCTCTTACAGAAGT-CTGAGT  47

seq1  T-CAATTCC-TATCACCCACATCACA-TGGTGGCTCA-CAATCATCTGTA  95
      | ||||||| |||||||||||||||| || ||||||| ||||||||||| 
seq2  TCCAATTCCATATCACCCACATCACATTGTTGGCTCACCAATCATCTGT-  96

seq1  ATACAATCTAATTTCCTCTTCTGGTGTGCAAAAAAAG-AGAACATTCATG  144
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATACAATCTAATTTCCTCTTCTGGTGTGCAAAAAAAGAAGAACATTCATG  146

seq1  TACATAAAAATAAATAAATAAAATTTAAAATTTTCCTTTAGAA-GGTTAA  193
      ||||| |||||||||||||||||||| |||||||||||||||| ||||||
seq2  TACAT-AAAATAAATAAATAAAATTT-AAATTTTCCTTTAGAAGGGTTAA  194

seq1  GAACAGTACTCAATTATAAGCCCTAACCAAACCTGTCATGGTTTTGGGGG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTACTCAATTATAAGCCCTAACCAAACCTGTCATGGTTTTGGGGG  244

seq1  AAGGGGATGGCTAAATTGTTGGAATGTTCTGGGAGAAT-CCATGGACCAT  292
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  AAGGGGATGGCTAAA-TGTTGGAATGTTCTGGGAGAATCCCATGGACCAT  293

seq1  TTTTTTTTTAACTGGAGGTAATAGTCACAAAATGGAAGTATACGTAGTTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAACTGGAGGTAATAGTCACAAAATGGAAGTATACGTAGTTT  343

seq1  GGGTGCAGAGAAATATTCTTTATTTTCCCTAAGTCAAAGCTACATAAGGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCAGAGAAATATTCTTTATTTTCCCTAAGTCAAAGCTACATAAGGA  393

seq1  TGTTCAACGTCAACAAATGCTGGCAAAGGGTGGGATGGAGGTTAAAATTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACGTCAACAAATGCTGGCAAAGGGTGGGATGGAGGTTAAAATTT  443

seq1  AAAAATTCATTAAACTCAGCAATCCTGTCATCCCATAATTAGACTAGATA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCATTAAACTCAGCAATCCTGTCATCCCATAATTAGACTAGATA  493

seq1  TCAAACACAGAACCTATCCACACTTGCTGGAAGCCTCAGCTCTTGCCATT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACACAGAACCTATCCACACTTGCTGGAAGCCTCAGCTCTTGCCATT  543

seq1  TATTAACAGTCCTTGAGCCTCAGTCATCACATGCATCTGTCCTCCACCCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACAGTCCTTGAGCCTCAGTCATCACATGCATCTGTCCTCCACCCA  593

seq1  ATTTTCAGTCCTATTTTCTCATTACAATGCTTTAGAATAGTTAGGAAAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGTCCTATTTTCTCATTACAATGCTTTAGAATAGTTAGGAAAAA  643

seq1  TCCCGTGGAACATCGGTCTCATCACATCCAAGGGAAGTCTGAGTTAGATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTGGAACATCGGTCTCATCACATCCAAGGGAAGTCTGAGTTAGATT  693

seq1  ATCACTCTCTCTGGCATGCGCATTAGCATACTGTGCATACTCCTGCCTGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCTCTCTGGCATGCGCATTAGCATACTGTGCATACTCCTGCCTGA  743

seq1  ACAACCACCACACTATTTTGTGTGTCTTTTAATTTATCACCCTCTTTCAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCACCACACTATTTTGTGTGTCTTTTAATTTATCACCCTCTTTCAA  793

seq1  AAAGTCTTCAAGCTTCTCAGGGGTTAGAGACTACATCTGACTTTTTCTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTCAAGCTTCTCAGGGGTTAGAGACTACATCTGACTTTTTCTCT  843

seq1  ATCCATGTTTCCAGCTTAATTAAGCCTGACACAAAAGGCTCCAAAAAGTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGTTTCCAGCTTAATTAAGCCTGACACAAAAGGCTCCAAAAAGTG  893

seq1  ATTGATATGTGAATGAACAGGAAATGTTCATCATATACAGAAAAGGAATG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATGTGAATGAACAGGAAATGTTCATCATATACAGAAAAGGAATG  943

seq1  TTCACTGAATTTCTTCCAGTCAATCCTTCAGAGGCCAAGATCTTTTTAAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGAATTTCTTCCAGTCAATCCTTCAGAGGCCAAGATCTTTTTAAT  993

seq1  CAACACACATTTGTAAGGAAGTACTTAAAGGGTACCTTTCCTACTCTCCC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACACATTTGTAAGGAAGTACTTAAAGGGTACCTTTCCTACTCTCCC  1043

seq1  CTACATTCCAATACCTGCTACCTATTAGAGAAAAAAATGGGCTGAATCAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTCCAATACCTGCTACCTATTAGAGAAAAAAATGGGCTGAATCAG  1093

seq1  TTAATTTTGATTTCTATATTAAACACATGACCAAAGCAACTCAGGGAGGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTGATTTCTATATTAAACACATGACCAAAGCAACTCAGGGAGGA  1143

seq1  AAGAATTC  1150
      ||||||||
seq2  AAGAATTC  1151


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