BAC Information

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BAC

Clone NameB6Ng01-269A11
Chromosome12 (Build37)
Map Location 34,060,755 - 34,061,782
singlet/doubletsinglet
Overlap genenone
Upstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1
Downstream gene4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269A11.bB6Ng01-269A11.g
ACCGA071737GA071738
length1,2261,026
definitionB6Ng01-269A11.b B6Ng01-269A11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaatacaggaatcacaaatagtcaagaaaatctaaaagaaatg
ctcaacatctttagccatcagggaaatgaaaatcaaaactattttgagat
ttcatcttacacctgtgacaatggctaagcacccaaacaaaagtgacatc
ttatgctggcaaggatgaggtgcaagaggaacactcctccactactcatg
ggaaagcaaatttgtacaaccactatggaaataaatagggcatttcctca
aaaaactgggaatccttctacctcaagaccactataccactcttgggcat
acacccaaaggatgctatataattatcacagtcagaaaacctcaactcaa
agctcagctctgacatgcaattgttcatctttggtatcagttaatttgga
gtatctgagctgttctttctgggaaatcatattaattagaactaacatca
cttacacgctaaaattccaatttcttcttcattatgtttatatagcctta
ttagctataggtttggtgttgtgtataccaggatatgttagtgactctta
tatagcaatcagctatggcttccagtttctgtctatgcccagagctgatc
ctgtgccacagtgctccatacccaaataccacctggagaaagctggtctc
ccaggagtacagacaagcctatgagtacaagtaagaccaccatttctgtt
ccatgggacctatccagaccccttagaacacaggaactgagaagtgtcct
gggacagaatccttcctgtttccatctgcacccaaagctgatcctgtgcc
acagcattccatacccaaataccatcaggagagagctggtctcccgggag
agctgacttactggcgagcacaggtaagaccatcacttctgctaaaattc
ctggcccaagagggacctgccccatagctatcagacacaggaaccaagac
aggatctttccagtttccatctgcacccaggagctgaccctgtgccacag
ctctcatacccagagagagtagtctcccaggtgtgtgacaaacagctgag
agggacagccatagtcgaagaagtagaccagataacacccaggcataact
agaatgcaggagacaagggcaagaaacataagccacaaagcaggaatttt
gaactactctcgaatcagtctcccacacaagtgaattctgggagatccct
acacaccttaggaaaggacccttggt
gaattctgtgggttttatgtagctggtcagtcatggggtaaattcaataa
ctattgttgcacagacaagaatttgcacctgttcatttgtcctttcctac
taaccaattttagaagcttttccagaagaattttgaagagagcatgtcca
atcatattcaacaaaggccacactcatggagtgggtttcttttctatgat
ccatattttgtaacactaagtattttcctcctttgtcccgcccctttata
cctttatgaattagcgctatcagatagagtccattccatgcctgtgatgt
tgtaagcggataaatgtccgacataggtgtaaatagtaaactctatggct
tacagttgttaaaagaaagaacaaatacgtatctattgatactcccgtgg
ttcagcaccaggtctggaaatattctccagtaagtgattgtatttttttt
tttttgcttttttttttttgtaacatggctttgtaaataaaataatttat
atgtttgtaaaaaaaaaaagtcttgtggtttttacaaactttatggtatt
atgttttgttttccttgtgaatgggggtattctaagcagaacagcctttc
caagagggcatgtattccagcaggagacgatgaagtagaagatggtgaat
tcaggggacaaatatttacagaaccacggctaggcctgcttctgagctca
ctgacaagaagtagacaagaggccagctagtttctagaggcagctcagtt
gaaaataaagcaaatagtaacccacgaccttgtgcgtaattacagagcct
agcgaaggctgtggtgggaaggctgggctctgtgggagggaagatgacta
cggaagctggggatgatattacatgggggaattctcctgaagaaagggtt
aagaccctgtctctgagagacagaggggagagaagacagagagagagaga
gagagagagacagactgacacgagaggggagactgacagactcagaggga
gacgacgacgactcagagaggggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34060755_34061782
seq2: B6Ng01-269A11.g_67_1092

seq1  GAATTCTGTGGGTTTTATGTAGCTGGTCAGTCATGGGGTAAATTCAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGGTTTTATGTAGCTGGTCAGTCATGGGGTAAATTCAATAA  50

seq1  CTATTGTTGCACAGACAAGAATTTGCACCTGTTCATTTGTCCTTTCCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTTGCACAGACAAGAATTTGCACCTGTTCATTTGTCCTTTCCTAC  100

seq1  TAACCAATTTTAGAAGCTTTTCCAGAAGAATTTTGAAGAGAGCATGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAATTTTAGAAGCTTTTCCAGAAGAATTTTGAAGAGAGCATGTCCA  150

seq1  ATCATATTCAACAAAGGCCACACTCATGGAGTGGGTTTCTTTTCTATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTCAACAAAGGCCACACTCATGGAGTGGGTTTCTTTTCTATGAT  200

seq1  CCATATTTTGTAACACTAAGTATTTTCCTCCTTTGTCCCGCCCCTTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTTGTAACACTAAGTATTTTCCTCCTTTGTCCCGCCCCTTTATA  250

seq1  CCTTTATGAATTAGCGCTATCAGATAGAGTCCATTCCATGCCTGTGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGAATTAGCGCTATCAGATAGAGTCCATTCCATGCCTGTGATGT  300

seq1  TGTAAGCGGATAAATGTCCGACATAGGTGTAAATAGTAAACTCTATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCGGATAAATGTCCGACATAGGTGTAAATAGTAAACTCTATGGCT  350

seq1  TACAGTTGTTAAAAGAAAGAACAAATACGTATCTATTGATACTCCCGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGTTAAAAGAAAGAACAAATACGTATCTATTGATACTCCCGTGG  400

seq1  TTCAGCACCAGGTCTGGAAATATTCTCCAGTAAGTGATTGTATTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCACCAGGTCTGGAAATATTCTCCAGTAAGTGATTGTATTTTTTTT  450

seq1  TTTTTGCTTTTTTTTTTTTGTAACATGGCTTTGTAAATAAAATAATTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTTTTTTTTTTTTGTAACATGGCTTTGTAAATAAAATAATTTAT  500

seq1  ATGTTTGTAAAAAAAAAAAGTCTTGTGGTTTTTACAAACTTTATGGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTAAAAAAAAAAAGTCTTGTGGTTTTTACAAACTTTATGGTATT  550

seq1  ATGTTTTGTTTTCCTTGTGAATGGGGGTATTCTAAGCAGAACAGCCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGTTTTCCTTGTGAATGGGGGTATTCTAAGCAGAACAGCCTTTC  600

seq1  CAAGAGGGCATGTATTCCAGCAGGAGACGATGAAGTAGAAGATGGTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGGCATGTATTCCAGCAGGAGACGATGAAGTAGAAGATGGTGAAT  650

seq1  TCAGGGGACAAATATTTACAGAACCACGGCTAGGCCTGCTTCTGAGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGACAAATATTTACAGAACCACGGCTAGGCCTGCTTCTGAGCTCA  700

seq1  CTGACAAGAAGTAGACAAGAGGCCAGCTAGTTTCTAGAGGCAGCTCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAGAAGTAGACAAGAGGCCAGCTAGTTTCTAGAGGCAGCTCAGTT  750

seq1  GAAAATAAAGCAAATAGTAACCCACGACCTTGTGCGTAATTACAGAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAGCAAATAGTAACCCACGACCTTGTGCGTAATTACAGAGCCT  800

seq1  AGCGAAGGCTGTGGTGGGAAGGCTGGGCTCTGTGGGAGGGAAGATGACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAAGGCTGTGGTGGGAAGGCTGGGCTCTGTGGGAGGGAAGATGACTA  850

seq1  CGGAAGCT-GGGATGATATTACATGGGGGAATTCTCCTGAAGAAAGGGTA  899
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  CGGAAGCTGGGGATGATATTACATGGGGGAATTCTCCTGAAGAAAGGGTT  900

seq1  AAGACCCTGTCTCTGAGAGACAGAGGGGAGAG-AGACAGAGAGAGAGAGA  948
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGACCCTGTCTCTGAGAGACAGAGGGGAGAGAAGACAGAGAGAGAGAGA  950

seq1  GAGAGAGAGACAGACAGACACAGAGA-GGGAGACAGACAGACACAGAGGG  997
      ||||||||||||||| ||||| |||| ||||||| ||||||| |||||||
seq2  GAGAGAGAGACAGACTGACAC-GAGAGGGGAGACTGACAGACTCAGAGGG  999

seq1  AGACAGACAGACAGACACAGAGAGGGAGAGA  1028
      |||| ||| ||| ||| ||||||||| ||||
seq2  AGAC-GAC-GAC-GACTCAGAGAGGG-GAGA  1026