BAC Information

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BAC

Clone NameB6Ng01-269C22
Chromosome12 (Build37)
Map Location 90,674,518 - 90,781,779
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneAdck1, LOC100039261, EG666915
Downstream geneLOC100039498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269C22.bB6Ng01-269C22.g
ACCGA071849GA071850
length1,1961,093
definitionB6Ng01-269C22.b B6Ng01-269C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,674,518 - 90,675,705)(90,780,686 - 90,781,779)
sequence
gaattccagaccagtgactcagcaatctgtccagggacctctaaagtgtt
aaatattgcttattcaaagaatgaatccatagtttgtataagcttttcta
gatttctgacacccacaaaagttacagtccatttgggacacacacacaca
caaatacctctccccccccccaacacacacacttctatcatgtgatctct
cataaaagtatacaaacacattattctttgattaaatgtagatttcctga
aaccaaagttttagccatatgttcctgagaaacttttcatagagatggca
gactcagactatgagtcaacattttttttaaggccccctcgatgtcctta
aaagaagaaaggggtagcttctagggggagtggaagatttaatctttttg
ctagttcaggtcccttggaggcaaaaatggtgttaatatagatcgcagaa
ttgtttcatatctgcatattatcaagggaactgaaaacaggttcttactg
ctctggccaggagctgtttagtttgggtgtgggtatgtgaacctgcagag
cagagccagacactggattctaccccccccccccccacacacacacacat
acactgcttcctactccctgaatgagatggcttcttatccctctatacag
ctgataacagctggatattgtccagtgctcctctcttggtgttcaagagt
gacaaactaggttcatgtcctcaatggctttctaaaaatagacttctaga
aggaaattatgcactggtgtttcagaaagagcattttctctgtttttcaa
ctgctacattgtttttcactagactgtatatgggggtgggtctttagggt
ttgacaatcttagggaaattagtaagcaaagggattatgattcatgtcat
ggtaggttgtaggagactatgtctaacagaagagacttcatttagatttc
ctaacaataaatgaatctatttctaactttgaaatcaaagtattgcattc
tgaagaccccacattgattttttaaagttagcacagttgagttattacac
ttttcaaacttatggatactgtttctatccatagaattgggttactggat
accattcttgatgccagtagaaacatttctgttcagtgtacagaattcct
ggatttgtacaactagattacagacctgcctgagtgtggtgccgca

gaattctctgtttgaaaacattttataatctcatttggcaaagtgacatt
gaccaggtggcaaaaaccctcaagataaacatagagaagaaaacgagcca
taacttaattaaaacaaagaataaaagtggccagttgctgaatgaagcca
aatccatccttgcacccacagagcttaatcaaatatttttggaggactgg
aaggaaaaagctatagggacctcagaacagaaactcagatggagaaactc
tggatggagacacatttgcagggatttaactggctttgtgcagcttctta
gagcattttctttagctgcagagggttctttgatatcagaatgcctataa
ctggaaatggagtgttttccaatagaaaaatcaattgggtctcaggtcat
gtcacaccacccactggtgctgatgggaagcttggaattattctgaggtt
ttgtggcttaaagcacagcatattgcaggttatattcccctccccacctt
ctactttttcccaccttacaaagatgaagtaaggcagaatgggggagggg
ggcttagcatctacttgcaactaaatgaaacaacagcttggatcccaaaa
attgattcagtggaaccaggaaaaagacaacagaaaaaataatgtgttgt
gagcctcctgacatcagactaaacctgtttgccagaaagacaagagagga
agaaactgagctgtaaggttgctcccagcttagtttcctaaggaaatttc
tgtgcagtaaagcagagatggggtcctcagatggaatccagctgcttcct
atagatgagatgtggctaacagttaggagagactctgaagggatcacaca
gaactaaaggaaacacaccaaagatcacagactacaaatttcaaattaca
tcttctcaaaaataggtggaaaatgtatgctgataccaatttcaaaggct
gaaagcttgagaagcagatgagactatctaactggaagaagtacaaggga
aatctctgagaagatgagacatcacagataactgtgtgttgttcatgggt
gtgatgattgtattaatatatgtatggtccatgcatttgctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90674518_90675705
seq2: B6Ng01-269C22.b_44_1239

seq1  GAATTCCAGACCAGTGACTCAGCAATCTGTCCAGGGACCTCTAAAGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCAGTGACTCAGCAATCTGTCCAGGGACCTCTAAAGTGTT  50

seq1  AAATATTGCTTATTCAAAGAATGAATCCATAGTTTGTATAAGCTTTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGCTTATTCAAAGAATGAATCCATAGTTTGTATAAGCTTTTCTA  100

seq1  GATTTCTGACACCCACAAAAGTTACAGTCCATTTGGGACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGACACCCACAAAAGTTACAGTCCATTTGGGACACACACACACA  150

seq1  CAAATACCTCTCCCCCCCCCCAACACACACACTTCTATCATGTGATCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACCTCTCCCCCCCCCCAACACACACACTTCTATCATGTGATCTCT  200

seq1  CATAAAAGTATACAAACACATTATTCTTTGATTAAATGTAGATTTCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGTATACAAACACATTATTCTTTGATTAAATGTAGATTTCCTGA  250

seq1  AACCAAAGTTTTAGCCATATGTTCCTGAGAAACTTTTCATAGAGATGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGTTTTAGCCATATGTTCCTGAGAAACTTTTCATAGAGATGGCA  300

seq1  GACTCAGACTATGAGTCAACATTTTTTTTAAGGCCCCCTCGATGTCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGACTATGAGTCAACATTTTTTTTAAGGCCCCCTCGATGTCCTTA  350

seq1  AAAGAAGAAAGGGGTAGCTTCTAGGGGGAGTGGAAGATTTAATCTTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAAGGGGTAGCTTCTAGGGGGAGTGGAAGATTTAATCTTTTTG  400

seq1  CTAGTTCAGGTCCCTTGGAGGCAAAAATGGTGTTAATATAGATCGCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCAGGTCCCTTGGAGGCAAAAATGGTGTTAATATAGATCGCAGAA  450

seq1  TTGTTTCATATCTGCATATTATCAAGGGAACTGAAAACAGGTTCTTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATATCTGCATATTATCAAGGGAACTGAAAACAGGTTCTTACTG  500

seq1  CTCTGGCCAGGAGCTGTTTAGTTTGGGTGTGGGTATGTGAACCTGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCAGGAGCTGTTTAGTTTGGGTGTGGGTATGTGAACCTGCAGAG  550

seq1  CAGAGCCAGACACTGGATTCTACCCCCCCCCCCCCCACACACACACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAGACACTGGATTCTACCCCCCCCCCCCCCACACACACACACAT  600

seq1  ACACTGCTTCCTACTCCCTGAATGAGATGGCTTCTTATCCCTCTATACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCTTCCTACTCCCTGAATGAGATGGCTTCTTATCCCTCTATACAG  650

seq1  CTGATAACAGCTGGATATTGTCCAGTGCTCCTCTCTTGGTGTTCAAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAACAGCTGGATATTGTCCAGTGCTCCTCTCTTGGTGTTCAAGAGT  700

seq1  GACAAACTAGGTTCATGTCCTCAATGGCTTTCTAAAAATAGACTTCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACTAGGTTCATGTCCTCAATGGCTTTCTAAAAATAGACTTCTAGA  750

seq1  AGGAAATTATGCACTGGTGTTTCAGAAAGAGCATTTTCTCTGTTTTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTATGCACTGGTGTTTCAGAAAGAGCATTTTCTCTGTTTTTCAA  800

seq1  CTGCTACATTGTTTTTCACTAGACTGTATAT-GGGGTGGGTCTTTAGGGT  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGCTACATTGTTTTTCACTAGACTGTATATGGGGGTGGGTCTTTAGGGT  850

seq1  TTGACAATCTTAGGGAAATTAGTAAGCAAA-GGATTATGATTCATGTCAT  898
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGACAATCTTAGGGAAATTAGTAAGCAAAGGGATTATGATTCATGTCAT  900

seq1  GGTAGG-TGTAGGAGACTATGTCTAACAGAAGAGACTTCATTTAGA-TTC  946
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  GGTAGGTTGTAGGAGACTATGTCTAACAGAAGAGACTTCATTTAGATTTC  950

seq1  CTAACAATTAAATGAATCTA-TTCTAAC-TTGAAATCAAAGTATTGCATT  994
      ||||||| |||||||||||| ||||||| |||||||||||||||||||||
seq2  CTAACAA-TAAATGAATCTATTTCTAACTTTGAAATCAAAGTATTGCATT  999

seq1  CTGAGAACCCAACATTGA-TTTTTAAAG-TAGCACAG-TGAGGTATTAAC  1041
      ||||  |||| ||||||| ||||||||| |||||||| |||| |||| ||
seq2  CTGAAGACCCCACATTGATTTTTTAAAGTTAGCACAGTTGAGTTATT-AC  1048

seq1  ACTTTCCAAACTTAT-GATACTGTTTCTATCCATTAGAATT-GGTTACTG  1089
      ||||| ||||||||| ||||||||||||||||| ||||||| ||||||||
seq2  ACTTTTCAAACTTATGGATACTGTTTCTATCCA-TAGAATTGGGTTACTG  1097

seq1  GTTACCA-TCTTGATG-CAGTAGAAACA-TTCTGTCAAGTG-ACAGAGAA  1135
      | ||||| |||||||| ||||||||||| ||||||  |||| ||||| | 
seq2  GATACCATTCTTGATGCCAGTAGAAACATTTCTGTTCAGTGTACAGA-AT  1146

seq1  TTCTGATTTTGTACAACTTAAAGTTTAACAGACCTG-CTGGGTGTGGTGG  1184
      | |||  |||||||||||   || || ||||||||| ||| |||||||| 
seq2  TCCTGGATTTGTACAACT---AGATT-ACAGACCTGCCTGAGTGTGGTGC  1192

seq1  CGCA  1188
      ||||
seq2  CGCA  1196


seq1: chr12_90780686_90781779
seq2: B6Ng01-269C22.g_65_1157 (reverse)

seq1  TCAGCAAAATGCATGGACCATACATATA-TAATACCAATCATCACACCCA  49
      ||||| |||||||||||||||||||||| ||||| |||||||||||||||
seq2  TCAGC-AAATGCATGGACCATACATATATTAATA-CAATCATCACACCCA  48

seq1  TGGAACCAACACCACAGTTATCTGTGATGTCTCATCTTCTCAGAGATTTC  99
      ||  | ||||| ||||||||||||||||||||||||||||||||||||||
seq2  TG--AACAACA-CACAGTTATCTGTGATGTCTCATCTTCTCAGAGATTTC  95

seq1  CCTTGTAC-TCTTCCAGTTAGATAGTCTCATTCTGC-TCTCAAGCTTTCA  147
      |||||||| ||||||||||||||||||||| ||||| |||||||||||||
seq2  CCTTGTACTTCTTCCAGTTAGATAGTCTCA-TCTGCTTCTCAAGCTTTCA  144

seq1  GCCTTTG-AATTGGTATCAGCATACATTTTCCACCTATTTTTGAGAAGAT  196
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGAAATTGGTATCAGCATACATTTTCCACCTATTTTTGAGAAGAT  194

seq1  GTAATTTGAAATTTGTAGTCTGTGATCTTTGGTGTGTTTCCTTTAGTTCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTGAAATTTGTAGTCTGTGATCTTTGGTGTGTTTCCTTTAGTTCT  244

seq1  GTGTGAT-CCTTCAGAGTCTCTCCTAACTGTTAGCCACATCTCATCTATA  295
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATCCCTTCAGAGTCTCTCCTAACTGTTAGCCACATCTCATCTATA  294

seq1  GGAAGCAGCTGGATTCCATCTGAGGACCCCATCTCTGCTTTACTGCACAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGCTGGATTCCATCTGAGGACCCCATCTCTGCTTTACTGCACAG  344

seq1  AAATTTCCTTAGGAAACTAAGCTGGGAGCAACCTTACAGCTCAGTTTCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCTTAGGAAACTAAGCTGGGAGCAACCTTACAGCTCAGTTTCTT  394

seq1  CCTCTCTTGTCTTTCTGGCAAACAGGTTTAGTCTGATGTCAGGAGGCTCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTGTCTTTCTGGCAAACAGGTTTAGTCTGATGTCAGGAGGCTCA  444

seq1  CAACACATTATTTTTTCTGTTGTCTTTTTCCTGGTTCCACTGAATCAATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATTATTTTTTCTGTTGTCTTTTTCCTGGTTCCACTGAATCAATT  494

seq1  TTTGGGATCCAAGCTGTTGTTTCATTTAGTTGCAAGTAGATGCTAAGCCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGATCCAAGCTGTTGTTTCATTTAGTTGCAAGTAGATGCTAAGCCC  544

seq1  CCCTCCCCCATTCTGCCTTACTTCATCTTTGTAAGGTGGGAAAAAGTAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCATTCTGCCTTACTTCATCTTTGTAAGGTGGGAAAAAGTAGA  594

seq1  AGGTGGGGAGGGGAATATAACCTGCAATATGCTGTGCTTTAAGCCACAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGAGGGGAATATAACCTGCAATATGCTGTGCTTTAAGCCACAAA  644

seq1  ACCTCAGAATAATTCCAAGCTTCCCATCAGCACCAGTGGGTGGTGTGACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGAATAATTCCAAGCTTCCCATCAGCACCAGTGGGTGGTGTGACA  694

seq1  TGACCTGAGACCCAATTGATTTTTCTATTGGAAAACACTCCATTTCCAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGAGACCCAATTGATTTTTCTATTGGAAAACACTCCATTTCCAGT  744

seq1  TATAGGCATTCTGATATCAAAGAACCCTCTGCAGCTAAAGAAAATGCTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCATTCTGATATCAAAGAACCCTCTGCAGCTAAAGAAAATGCTCT  794

seq1  AAGAAGCTGCACAAAGCCAGTTAAATCCCTGCAAATGTGTCTCCATCCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTGCACAAAGCCAGTTAAATCCCTGCAAATGTGTCTCCATCCAG  844

seq1  AGTTTCTCCATCTGAGTTTCTGTTCTGAGGTCCCTATAGCTTTTTCCTTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCCATCTGAGTTTCTGTTCTGAGGTCCCTATAGCTTTTTCCTTC  894

seq1  CAGTCCTCCAAAAATATTTGATTAAGCTCTGTGGGTGCAAGGATGGATTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTCCAAAAATATTTGATTAAGCTCTGTGGGTGCAAGGATGGATTT  944

seq1  GGCTTCATTCAGCAACTGGCCACTTTTATTCTTTGTTTTAATTAAGTTAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCATTCAGCAACTGGCCACTTTTATTCTTTGTTTTAATTAAGTTAT  994

seq1  GGCTCGTTTTCTTCTCTATGTTTATCTTGAGGGTTTTTGCCACCTGGTCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGTTTTCTTCTCTATGTTTATCTTGAGGGTTTTTGCCACCTGGTCA  1044

seq1  ATGTCACTTTGCCAAATGAGATTATAAAATGTTTTCAAACAGAGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACTTTGCCAAATGAGATTATAAAATGTTTTCAAACAGAGAATTC  1093


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