BAC Information

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BAC

Clone NameB6Ng01-270C18
Chromosome12 (Build37)
Map Location 79,481,162 - 79,642,528
singlet/doubletdoublet
Overlap geneGphn
Upstream geneFut8, LOC230765, LOC666659, EG626215
Downstream gene4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270C18.bB6Ng01-270C18.g
ACCGA072582GA072583
length1,1951,112
definitionB6Ng01-270C18.b B6Ng01-270C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,481,162 - 79,482,365)(79,641,412 - 79,642,528)
sequence
gaattctgatcaaaacaaatgtgataccttctgaaaatgaaaaagttaca
aaaagaatccaaatagaaattataaaactgaaagctaaagacataaaaaa
aatgcagatggaaaaaaagggcagtcattgtatctggagaaactgctaag
ttctcaataatggactcactcttaattgtatacattgacagaaaccaaag
ctgtgtaagcctctatgtcctgaaaggaaagataaaatccctttttggac
agaagtccagtctttctcaccttagtgttctttcttatttcaccaaggtt
accttgtgaaaaatgttcatctgcagcaagagtgtctgtttttacataga
ggttttctcttacattcctgctagtgtgtcagtctatttcataacagaac
aagttacaggtttacttgcaagttctcaatattccaggaaggccagagtg
aatttccttatgaatcttttgtgcatctgccttagaactctaactagtca
atagtcagttgttttggttgggctccatgacctgccatacttggcatttt
tttaatgttaattttttttattagatattttcttaattgacatttcaaat
gctatcctgaaagtccactataccctcccccaaccttgctccccaaccca
tccagtcccacatcctggccctggcattcccttgtactagggcatataat
cttcacaagaccaagggctctcctcccattcattgattgctgactaggcc
atcctctgctacatatgcaactagagacacaagctttgtggggtactggt
tagttcatattgttgttcctcctatagggttgcagaccagcatgttttat
cagagtgtagttctcattcaaacactaatgtcttcccatccattggctag
tgagggaatacattccagttctttttgttgtgctttagagtccagtggta
gtactttctttgcagctgttcagcttgtgtgcaaagcaggcagacagaca
cagcacaaataattcatgaaaaatcatgtgtacagcagttgattcatgct
gcagttggtttgcagtttagatgctgtttgctcacagtagggtatgtgtg
cttattattggtgcctccttaatattatcccctctggatcctcagctaag
cctcatggattggtcctcctcttaggtgctcacaaaggtgtttgc
gaattcaacctgggtcctctggaagagcagccagtgctcttaatcactga
gccatctctccagccattgcaactgggaaattaggtgtggttgaagctaa
gttcagtctactagcaggagtgagtaaaaagagaggttgatcaggtgagc
acaggacaatttctagagatcattgatgctactgaattatttaaaatcac
ggaatgctatagttccatcaacatttaatatgttaactacagtgagcaag
gtgaagatgaattatttgtagaatagatgataagggaacgaacctcaaaa
atctaaatacatcactgaaagtagttctaaagagcaaggttcaggttctg
gagaaaaaaaaagaggcaaagtctgttgggttttgaatagtcatatggga
tgaaagataactctcaagtctccactctgaattattgtgtagggtcacat
attgttagagtggacacatgtgaagagagtttaggagatgaagatgatta
ctaacaggtacaaaatagagaacaaattgtagaagaaaaagtaatatagg
gtaagactataagtacaaatgaaatttccttgagtagatggcaaacagga
gttgttagctgaggctttctagaagaagatgaatctgagttataaagtgt
cggaaagcatgtctggcaggcaagtaatacaaactacacaaaaaaagcca
tgacgaaagaaacagacataagaaggtttacttttattggagtaataaca
tggagtaaatggagtaaatggcttatttgtactgttttgcccaggacaga
caagattcttctaagacatccagcattaaaactgatagttcaatatcctg
ttcaaatggagaagagttggtacaagtacatatgagaaaaataaataagg
caaaatatgggtttgaaaagaggtgcagagacatttatctctgatagtat
caatctccattataggtaaaaattgttaaaaaaaatcttccttagaagtt
ttcagtttccagcttactaacatctgcgaattacatcttccttttctcca
ataacaaattatattaccactaattatcacccttaaattcctgtcgatag
aagaggagaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_79481162_79482365
seq2: B6Ng01-270C18.b_46_1240

seq1  GAATTCTGATCAAAACAAATGTGATACCTTCTGAAAATGAAAAAGTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATCAAAACAAATGTGATACCTTCTGAAAATGAAAAAGTTACA  50

seq1  AAAAGAATCCAAATAGAAATTATAAAACTGAAAGCTAAAGACATAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATCCAAATAGAAATTATAAAACTGAAAGCTAAAGACATAAAAAA  100

seq1  AATGCAGATGGAAAAAAAGGGCAGTCATTGTATCTGGAGAAACTGCTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGATGGAAAAAAAGGGCAGTCATTGTATCTGGAGAAACTGCTAAG  150

seq1  TTCTCAATAATGGACTCACTCTTAATTGTATACATTGACAGAAACCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATAATGGACTCACTCTTAATTGTATACATTGACAGAAACCAAAG  200

seq1  CTGTGTAAGCCTCTATGTCCTGAAAGGAAAGATAAAATCCCTTTTTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAAGCCTCTATGTCCTGAAAGGAAAGATAAAATCCCTTTTTGGAC  250

seq1  AGAAGTCCAGTCTTTCTCACCTTAGTGTTCTTTCTTATTTCACCAAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCCAGTCTTTCTCACCTTAGTGTTCTTTCTTATTTCACCAAGGTT  300

seq1  ACCTTGTGAAAAATGTTCATCTGCAGCAAGAGTGTCTGTTTTTACATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTGAAAAATGTTCATCTGCAGCAAGAGTGTCTGTTTTTACATAGA  350

seq1  GGTTTTCTCTTACATTCCTGCTAGTGTGTCAGTCTATTTCATAACAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTCTTACATTCCTGCTAGTGTGTCAGTCTATTTCATAACAGAAC  400

seq1  AAGTTACAGGTTTACTTGCAAGTTCTCAATATTCCAGGAAGGCCAGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACAGGTTTACTTGCAAGTTCTCAATATTCCAGGAAGGCCAGAGTG  450

seq1  AATTTCCTTATGAATCTTTTGTGCATCTGCCTTAGAACTCTAACTAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTTATGAATCTTTTGTGCATCTGCCTTAGAACTCTAACTAGTCA  500

seq1  ATAGTCAGTTGTTTTGGTTGGGCTCCATGACCTGCCATACTTGGCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAGTTGTTTTGGTTGGGCTCCATGACCTGCCATACTTGGCATTTT  550

seq1  TTTAATGTTAATTTTTTTTATTAGATATTTTCTTAATTGACATTTCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTTAATTTTTTTTATTAGATATTTTCTTAATTGACATTTCAAAT  600

seq1  GCTATCCTGAAAGTCCACTATACCCTCCCCCAACCTTGCTCCCCAACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCTGAAAGTCCACTATACCCTCCCCCAACCTTGCTCCCCAACCCA  650

seq1  TCCAGTCCCACATCCTGGCCCTGGCATTCCCTTGTACTAGGGCATATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCCCACATCCTGGCCCTGGCATTCCCTTGTACTAGGGCATATAAT  700

seq1  CTTCACAAGACCAAGGGCTCTCCTCCCATTCATTGATTGCTGACTAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAAGACCAAGGGCTCTCCTCCCATTCATTGATTGCTGACTAGGCC  750

seq1  ATCCTCTGCTACATATGCAACTAGAGACACAAGCTTTGTGGGGTACTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGCTACATATGCAACTAGAGACACAAGCTTTGTGGGGTACTGGT  800

seq1  TAGTTCATATTGTTGTTCCTCCTATAGGGTTGCAGACCAGCATGTTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCATATTGTTGTTCCTCCTATAGGGTTGCAGACCAGCATGTTTTAT  850

seq1  CAGAGTGTAGTTCTCATTCAAACACTAATGTCTTCCCATCCATTGGCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTAGTTCTCATTCAAACACTAATGTCTTCCCATCCATTGGCTAG  900

seq1  TGAGGGAATACATTCCAGTTCTTTTTGTTGTGCTTTAGAGTCCAGTGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAATACATTCCAGTTCTTTTTGTTGTGCTTTAGAGTCCAGTGGTA  950

seq1  GTACTTTCTTTGCAGCTGTTCAGCTTGTGTGCAAAGCAGGGCAGACAGAC  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTACTTTCTTTGCAGCTGTTCAGCTTGTGTGCAAAGCA-GGCAGACAGAC  999

seq1  ACAGCACAAAATAATTCATGAAAAATCATGGTGTACAGGCAGGTTTGATT  1050
      ||||||| ||||||||||||||||||||| ||||||| ||||  |||| |
seq2  ACAGCAC-AAATAATTCATGAAAAATCAT-GTGTACA-GCAG--TTGA-T  1043

seq1  TCATGCTGCAGTTGGTTTGCAGGTTTTAGATGCTGTTTGCTTCACAGTAG  1100
      ||||||||||||||||||||||  |||||||||||||||| |||||||||
seq2  TCATGCTGCAGTTGGTTTGCAG--TTTAGATGCTGTTTGC-TCACAGTAG  1090

seq1  GGTATTGTTGTTGCTTA-TATT-GTG-CTCCTTATATTTAATCCCCTCTG  1147
      |||| |||   |||||| |||| ||| ||||||| || | ||||||||||
seq2  GGTA-TGT--GTGCTTATTATTGGTGCCTCCTTA-ATATTATCCCCTCTG  1136

seq1  GGTCCTCAGTTAAG-CTCTTTGATTTGTCCTCCTCTAGTTTGTTCAC-AA  1195
      | ||||||| |||| ||| | |||| ||||||||||    || |||| ||
seq2  GATCCTCAGCTAAGCCTCATGGATTGGTCCTCCTCTTAGGTGCTCACAAA  1186

seq1  TGTGTTTGC  1204
       ||||||||
seq2  GGTGTTTGC  1195

seq1: chr12_79641412_79642528
seq2: B6Ng01-270C18.g_62_1173 (reverse)

seq1  AATTCT-CTCTTCTTATCGACAGGATTTTAAGGGTGATAATTTAGTTGGG  49
      |||||| |||||| ||||||||||| |||||||||||||| |||||  ||
seq2  AATTCTCCTCTTC-TATCGACAGGAATTTAAGGGTGATAA-TTAGT--GG  46

seq1  TAATATAATTTGTTATTGGAGAAAAGGGAAGATGTAATTCGCAGATGTTA  99
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAATATAATTTGTTATTGGAGAAAA-GGAAGATGTAATTCGCAGATGTTA  95

seq1  GTAAGCCTGGAAACTGAAAACTTCTAAGGAAGATTTTTTTTAACAATTTT  149
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAG-CTGGAAACTGAAAACTTCTAAGGAAGATTTTTTTTAACAATTTT  144

seq1  TACCTATAATGGAGATTGATACTATCAGAGATAAATGTCTCTGCACCTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATAATGGAGATTGATACTATCAGAGATAAATGTCTCTGCACCTCT  194

seq1  TTTCAAACCCATATTTTGCCTTATTTATTTTTCTCATATGTACTTGTACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACCCATATTTTGCCTTATTTATTTTTCTCATATGTACTTGTACC  244

seq1  AACTCTTCTCCATTTGAACAGGATATTGAACTATCAGTTTTAATGCTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCTCCATTTGAACAGGATATTGAACTATCAGTTTTAATGCTGGA  294

seq1  TGTCTTAGAAGAATCTTGTCTGTCCTGGGCAAAACAGTACAAATAAGCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGAAGAATCTTGTCTGTCCTGGGCAAAACAGTACAAATAAGCCA  344

seq1  TTTACTCCATTTACTCCATGTTATTACTCCAATAAAAGTAAACCTTCTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCCATTTACTCCATGTTATTACTCCAATAAAAGTAAACCTTCTTA  394

seq1  TGTCTGTTTCTTTCGTCATGGCTTTTTTTGTGTAGTTTGTATTACTTGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTCTTTCGTCATGGCTTTTTTTGTGTAGTTTGTATTACTTGCC  444

seq1  TGCCAGACATGCTTTCCGACACTTTATAACTCAGATTCATCTTCTTCTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGACATGCTTTCCGACACTTTATAACTCAGATTCATCTTCTTCTAG  494

seq1  AAAGCCTCAGCTAACAACTCCTGTTTGCCATCTACTCAAGGAAATTTCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCAGCTAACAACTCCTGTTTGCCATCTACTCAAGGAAATTTCAT  544

seq1  TTGTACTTATAGTCTTACCCTATATTACTTTTTCTTCTACAATTTGTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTATAGTCTTACCCTATATTACTTTTTCTTCTACAATTTGTTCT  594

seq1  CTATTTTGTACCTGTTAGTAATCATCTTCATCTCCTAAACTCTCTTCACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGTACCTGTTAGTAATCATCTTCATCTCCTAAACTCTCTTCACA  644

seq1  TGTGTCCACTCTAACAATATGTGACCCTACACAATAATTCAGAGTGGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCACTCTAACAATATGTGACCCTACACAATAATTCAGAGTGGAGA  694

seq1  CTTGAGAGTTATCTTTCATCCCATATGACTATTCAAAACCCAACAGACTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAGTTATCTTTCATCCCATATGACTATTCAAAACCCAACAGACTT  744

seq1  TGCCTCTTTTTTTTTCTCCAGAACCTGAACCTTGCTCTTTAGAACTACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTTTTTTTTTCTCCAGAACCTGAACCTTGCTCTTTAGAACTACTT  794

seq1  TCAGTGATGTATTTAGATTTTTGAGGTTCGTTCCCTTATCATCTATTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATGTATTTAGATTTTTGAGGTTCGTTCCCTTATCATCTATTCTA  844

seq1  CAAATAATTCATCTTCACCTTGCTCACTGTAGTTAACATATTAAATGTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATTCATCTTCACCTTGCTCACTGTAGTTAACATATTAAATGTTG  894

seq1  ATGGAACTATAGCATTCCGTGATTTTAAATAATTCAGTAGCATCAATGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTATAGCATTCCGTGATTTTAAATAATTCAGTAGCATCAATGAT  944

seq1  CTCTAGAAATTGTCCTGTGCTCACCTGATCAACCTCTCTTTTTACTCACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAAATTGTCCTGTGCTCACCTGATCAACCTCTCTTTTTACTCACT  994

seq1  CCTGCTAGTAGACTGAACTTAGCTTCAACCACACCTAATTTCCCAGTTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAGTAGACTGAACTTAGCTTCAACCACACCTAATTTCCCAGTTGC  1044

seq1  AATGGCTGGAGAGATGGCTCAGTGATTAAGAGCACTGGCTGCTCTTCCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGGAGAGATGGCTCAGTGATTAAGAGCACTGGCTGCTCTTCCAG  1094

seq1  AGGACCCAGGTTGAATTC  1117
      ||||||||||||||||||
seq2  AGGACCCAGGTTGAATTC  1112