BAC Information

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BAC

Clone NameB6Ng01-271K24
Chromosome12 (Build37)
Map Location 34,268,528 - 34,269,600
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
Downstream geneLOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271K24.bB6Ng01-271K24.g
ACCGA073704GA073705
length7541,067
definitionB6Ng01-271K24.b B6Ng01-271K24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtattcaaaatgctataattaacttctttatagtatagtcatt
cgtaaattattataactagagtcaacttaaagttctgttttcaaaacgtt
ttcctagaaattacgtgttttatatacaaccactgttattcgctattatg
aatttaattatgtacttctactatatcaattagccttatatgctcacatt
ctatgaagattgcacattaccattctttattttacccaaagaattcgtct
cccatgtgtatttttgtcatatcaatataatactgataaactctttgaat
gcctttggttgtggtgtctacttcttttatgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtggtggaaattttagcatcacttatatatactatcat
atcatctgcaaaaagtgatattttgacttcttactttccaatttgtatcc
ccttgatctccttttgttgtctaattgctctggctaggacttcaagtact
atgttgaataggtagggagaaagtgggcatccttgtctagtccctgattt
tagtgggattccagtttctcaccatttactttgatgttggctactggttt
gctgcagattatttttatcatgtttaggtatgggcctcgaattcctgatc
tttccaagactttttaacatgaatgggtgtaggattttttttaaaatgtt
ttctctgctctaaagtgatgatcattgtggtttattgttttttggggttt
gttt
gaattccttcagaccagacagaaacatcatgcttcctgcttaaatacata
ggtatagttaattacttttatgcaagtattcagaccaatcacgtgtgatg
tatccatcttatgagatatcattgagtaattctattctgctcacacctca
acgagaacaccgagatcagcaacttactaattatattacatgatatgtta
gaactaaggtggatgtttaaaatagacttgaacatctgcatagaagatac
cggaatattgtcaggagatatttcaccaccatcagttatttctggcactg
taacaagaaaccagggtgaaaccttatctgttttgttctctgatgagtcc
taagcactttggaagataggtagtaaactttcaacatatttgtactgaat
cagttgtcaatcttactgaactcaaaactttgtcattatagacacctctg
tattgtgggggtttactagattctagcaattcaagaagcaggtttgtcaa
taaataataattaattgggaagacaggaacttgaagctcaagcttacaac
atcgacacaggtaactttgtcaagttaactgctaaaccaaatcacaccaa
gaaagaaattgtaaaatttgcaatgagaaatgcaaatttcccaggaacta
taattatgatgtgtgtttctttaatcagaaattgagtggattttttaatg
gatgctcaataatgacattaataatgttatatccccttccttcttttttt
ctccctctctcactccctctttcccttctcttcctttcccctcctctttc
ttccttcctttcttcctccctccctccctccccccctctttcctttctaa
aaatgcaagctggtccattcactagtttttatattgttgcccagaggaat
catgagctcaggaggaaggcactccactgagcatgctcacacttgaaagc
accatccacttagtgacagagctatttttcaagcaagtgggggagcagta
tcacatagagcacagatttagatttaattggttgacctatgtcttagcct
ctatgagtcactgcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34268528_34269600
seq2: B6Ng01-271K24.g_66_1132

seq1  GAATTCCTTCAGACCAGACAGAAACATCATGCTTCCTGCTTAAATACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGACCAGACAGAAACATCATGCTTCCTGCTTAAATACATA  50

seq1  GGTATAGTTAATTACTTTTATGCAAGTATTCAGACCAATCACGTGTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGTTAATTACTTTTATGCAAGTATTCAGACCAATCACGTGTGATG  100

seq1  TATCCATCTTATGAGATATCATTGAGTAATTCTATTCTGCTCACACCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATCTTATGAGATATCATTGAGTAATTCTATTCTGCTCACACCTCA  150

seq1  ACGAGAACACCGAGATCAGCAACTTACTAATTATATTACATGATATGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAACACCGAGATCAGCAACTTACTAATTATATTACATGATATGTTA  200

seq1  GAACTAAGGTGGATGTTTAAAATAGACTTGAACATCTGCATAGAAGATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAGGTGGATGTTTAAAATAGACTTGAACATCTGCATAGAAGATAC  250

seq1  CGGAATATTGTCAGGAGATATTTCACCACCATCAGTTATTTCTGGCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATATTGTCAGGAGATATTTCACCACCATCAGTTATTTCTGGCACTG  300

seq1  TAACAAGAAACCAGGGTGAAACCTTATCTGTTTTGTTCTCTGATGAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGAAACCAGGGTGAAACCTTATCTGTTTTGTTCTCTGATGAGTCC  350

seq1  TAAGCACTTTGGAAGATAGGTAGTAAACTTTCAACATATTTGTACTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACTTTGGAAGATAGGTAGTAAACTTTCAACATATTTGTACTGAAT  400

seq1  CAGTTGTCAATCTTACTGAACTCAAAACTTTGTCATTATAGACACCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTCAATCTTACTGAACTCAAAACTTTGTCATTATAGACACCTCTG  450

seq1  TATTGTGGGGGTTTACTAGATTCTAGCAATTCAAGAAGCAGGTTTGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGGGGGTTTACTAGATTCTAGCAATTCAAGAAGCAGGTTTGTCAA  500

seq1  TAAATAATAATTAATTGGGAAGACAGGAACTTGAAGCTCAAGCTTACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATAATTAATTGGGAAGACAGGAACTTGAAGCTCAAGCTTACAAC  550

seq1  ATCGACACAGGTAACTTTGTCAAGTTAACTGCTAAACCAAATCACACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACACAGGTAACTTTGTCAAGTTAACTGCTAAACCAAATCACACCAA  600

seq1  GAAAGAAATTGTAAAATTTGCAATGAGAAATGCAAATTTCCCAGGAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATTGTAAAATTTGCAATGAGAAATGCAAATTTCCCAGGAACTA  650

seq1  TAATTATGATGTGTGTTTCTTTAATCAGAAATTGAGTGGATTTTTTAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATGATGTGTGTTTCTTTAATCAGAAATTGAGTGGATTTTTTAATG  700

seq1  GATGCTCAATAATGACATTAATAATGTTATATCCCCTTCCTTCTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCAATAATGACATTAATAATGTTATATCCCCTTCCTTCTTTTTTT  750

seq1  CTCCCTCTCTCACTCCCTCTTTCCCTTCTCTTCCTTTCCCCTCCTCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTCTCACTCCCTCTTTCCCTTCTCTTCCTTTCCCCTCCTCTTTC  800

seq1  TTCCTTCCTTTCTTCCTCCCTCCCTCCCTCCCCCCCTCTTTCCTTTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTTCTTCCTCCCTCCCTCCCTCCCCCCCTCTTTCCTTTCTAA  850

seq1  AAATGCAAGCTGGTCCATTCACTAGTTTTTATATTGTTGCCCAGAGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATGCAAGCTGGTCCATTCACTAGTTTTTATATTGTTGCCCAGAGG-AA  899

seq1  TCATGAGCTCAGGGAGGAAGGCACTCCACTGAGCATGCTCACACTTGAAA  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGCTCA-GGAGGAAGGCACTCCACTGAGCATGCTCACACTTGAAA  948

seq1  GCACCAATCCACTTAGTGACAAGAGCTATTTTCAAAGGCAGGTGGGGAGC  1000
      ||||| |||||||||||||| |||||||||||  |||  ||  |||||||
seq2  GCACC-ATCCACTTAGTGAC-AGAGCTATTTTTCAAGCAAGTGGGGGAGC  996

seq1  AGTATCAACATAGAGCAACAGATTTAGATTTAATTGGTTGACCTATGTCC  1050
      |||||| ||||||||| |||||||||||||||||||||||||||||||| 
seq2  AGTATC-ACATAGAGC-ACAGATTTAGATTTAATTGGTTGACCTATGTCT  1044

seq1  TAGCCTCTATGAGTCACTGCCCC  1073
      |||||||||||||||||||||||
seq2  TAGCCTCTATGAGTCACTGCCCC  1067