BAC Information

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BAC

Clone NameB6Ng01-271L21
Chromosome12 (Build37)
Map Location 28,242,899 - 28,244,058
singlet/doubletsinglet
Overlap genenone
Upstream gene1700020D12Rik, Sox11
Downstream geneLOC100043009, LOC669327, 1110015M06Rik, Allc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271L21.bB6Ng01-271L21.g
ACCGA073744GA073745
length1,1471,164
definitionB6Ng01-271L21.b B6Ng01-271L21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttagatctcctcacagttatgaaatgatacagagttaaatttaa
aaaataaaaataaaaattctgcactttaaaatctattctcgtagctactt
ataaagaaatgactgaagattttgcacaattggtatattctttcctacaa
ggaatctgatccaagagaaaccaggttgccatacagagaagcaggttact
atccagaattaattaagggggatgaagacttaaacacagagtggttatag
acgcttggcttagatgctagtctcagaagtgagaagatactttccccttt
cagactggcgccagcatcccacttctcatctcagtgcctgttgtgcatta
cagttcacaagttcactctctcatagtttggtgtattatatagttttatc
tactttccaatttactgttttatacacatagcaaagctagtggaacaata
gaaccactttaatatattgtggaggtgggaaaattgtagctggcaatatg
atacagttcctatgtttgtagtatgctgacagaagtgcccctccccatgt
tgcgttctcatatagcttctgcatacatcttcatgctcccatccccatca
cttgcctcattgctttacagtacagtccattgagtagtcgatcactaatt
atgatatatagactctggacatcccagagatgagatctattcaaaggcag
cagccatgtaggttaatggtagcccaggcctgtaaacaagataatttgtg
ctgtaggtgattcacatgaggctcaatggagaacagtgaagatgtgttct
tagatgtgtcacttgtgaaagccaaagggctctctgtgttcagtttaatc
taataagtaaagattgcctctttcctgggtacctgactatggtggtctga
gtaagaatagcttttatatttgggatgcttgtttagtcatcaggaaatgg
cactgttgagaaggattaggaggtatggccttgtcagagtagtgtagcct
tgtgggagaagttgtcactggagagggctttaaagctcacagctcaatct
ggttctgcttatggctcagatgagtctcagctacttcttctcacacaggc
tgaaaagattctttatttggcctgatgtacttgttgattccaaggct

gaattcttaaacctgataaacagcttcactgaagtagctggatataaaat
taattcaaacaaatcagtggcctttctctacacaaaggataaacaggctg
agaaagaaattagggaaacaacacccttcaaaatagtcacaaataatata
aaataccttggtacgactctaactaaggaagtaaaatatctgtatgataa
aaacttcaatcctctgaagaaagaaatcaaaaaagatctcagaagatgga
caaatctcccatgactatggattggcagggttattatagtaaaaatggct
atcttgccaaaaaaaaaaaatctacagattcaatgcaatagcaatcctaa
ttccaatgcaattcttcacctagttagaaagggcaatttgcaaatttatc
tggaataacaaaaaaacctaggacaccaaaaactcttctcaacaataaaa
gaacctttggtggaaacaccatgcctgacctcaagcagtactacaaagca
attgtgataaaaactgcatgttcctggtacagcaacagacagatagatca
attgaatagaattgaagacccaggaatgaacccacacatctatggtcact
tcatctttgacaagggagctaaaaccgtccagtggaaaaaaaacacagca
ttttcaacaaatggtgctggcacaactggcagttatcatgtagaagaatg
tgaattgatccattcttacctccttgtacaaagctcaagtctacgtggat
caaagaactctacataaaatcagagacactgaaacttatagaggagaaag
tgggggaaagcctcgaacatatgggcacagggggaaaattcctgaacaga
acagcaatggcttgtgctgtaatatcaagaattgacaaatgggacctcat
aaaactgcaagcatctctaacgcaaagacattgtcaataagacaaaaacg
ccaccaacagatgggaaaggatctttacctatcctaatcagataggggac
tatatccattatataaagaactcagagctgactcagaaaatcaataacct
attaaaattggttcagagcttaacaaaattctcaactgagatactgatgc
ctgaatgcactgaaaattcacattcttaatcatcaggaattgcaaatccg
acacacacccctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_28242899_28244058
seq2: B6Ng01-271L21.b_50_1196

seq1  GAATTCTTAGATCTCCTCACAGTTATGAAATGATACAGAGTTAAATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGATCTCCTCACAGTTATGAAATGATACAGAGTTAAATTTAA  50

seq1  AAAATAAAAATAAAAATTCTGCACTTTAAAATCTATTCTCGTAGCTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAATAAAAATTCTGCACTTTAAAATCTATTCTCGTAGCTACTT  100

seq1  ATAAAGAAATGACTGAAGATTTTGCACAATTGGTATATTCTTTCCTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAATGACTGAAGATTTTGCACAATTGGTATATTCTTTCCTACAA  150

seq1  GGAATCTGATCCAAGAGAAACCAGGTTGCCATACAGAGAAGCAGGTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTGATCCAAGAGAAACCAGGTTGCCATACAGAGAAGCAGGTTACT  200

seq1  ATCCAGAATTAATTAAGGGGGATGAAGACTTAAACACAGAGTGGTTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAATTAATTAAGGGGGATGAAGACTTAAACACAGAGTGGTTATAG  250

seq1  ACGCTTGGCTTAGATGCTAGTCTCAGAAGTGAGAAGATACTTTCCCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTGGCTTAGATGCTAGTCTCAGAAGTGAGAAGATACTTTCCCCTTT  300

seq1  CAGACTGGCGCCAGCATCCCACTTCTCATCTCAGTGCCTGTTGTGCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGCGCCAGCATCCCACTTCTCATCTCAGTGCCTGTTGTGCATTA  350

seq1  CAGTTCACAAGTTCACTCTCTCATAGTTTGGTGTATTATATAGTTTTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCACAAGTTCACTCTCTCATAGTTTGGTGTATTATATAGTTTTATC  400

seq1  TACTTTCCAATTTACTGTTTTATACACATAGCAAAGCTAGTGGAACAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCAATTTACTGTTTTATACACATAGCAAAGCTAGTGGAACAATA  450

seq1  GAACCACTTTAATATATTGTGGAGGTGGGAAAATTGTAGCTGGCAATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACTTTAATATATTGTGGAGGTGGGAAAATTGTAGCTGGCAATATG  500

seq1  ATACAGTTCCTATGTTTGTAGTATGCTGACAGAAGTGCCCCTCCCCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTCCTATGTTTGTAGTATGCTGACAGAAGTGCCCCTCCCCATGT  550

seq1  TGCGTTCTCATATAGCTTCTGCATACATCTTCATGCTCCCATCCCCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTCTCATATAGCTTCTGCATACATCTTCATGCTCCCATCCCCATCA  600

seq1  CTTGCCTCATTGCTTTACAGTACAGTCCATTGAGTAGTCGATCACTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCATTGCTTTACAGTACAGTCCATTGAGTAGTCGATCACTAATT  650

seq1  ATGATATATAGACTCTGGACATCCCAGAGATGAGATCTATTCAAAGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATATAGACTCTGGACATCCCAGAGATGAGATCTATTCAAAGGCAG  700

seq1  CAGCCATGTAGGTTAATGGTAGCCCAGGCCTGTAAACAAGATAATTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGTAGGTTAATGGTAGCCCAGGCCTGTAAACAAGATAATTTGTG  750

seq1  CTGTAGGTGATTCACATGAGGCTCAATGGAGAACAGTGAAGATGTGTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGTGATTCACATGAGGCTCAATGGAGAACAGTGAAGATGTGTTCT  800

seq1  TAGATGTGTCACTTGTGAAAGCCAAAGGGCTCTCTGTGTTCAGTTTAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTGTCACTTGTGAAAGCCAAAGGGCTCTCTGTGTTCAGTTTAATC  850

seq1  TAATAAGTAAAGATTGCCTCTTTCCTGGGTACCTGACTATGGTGGTCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTAAAGATTGCCTCTTTCCTGGGTACCTGACTATGGTGGTCTGA  900

seq1  GTAAGAATAGCTTTTATATTT-GGATGCTTGTTTAGTCATCAGGAAATGG  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTAAGAATAGCTTTTATATTTGGGATGCTTGTTTAGTCATCAGGAAATGG  950

seq1  CACTGTTTGAGAAGGATTAGGAGGTATGGCCTTGTCAGAGTAGGTGTAGC  999
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  CACTG-TTGAGAAGGATTAGGAGGTATGGCCTTGTCAGAGTA-GTGTAGC  998

seq1  CTTGTTGGAGAAGGTTGTCACTGGGAGAGGGCTTTAAAAGCTCAACCAAG  1049
      ||||| |||||| ||||||||| |||||||||||| ||||||||  ||  
seq2  CTTGTGGGAGAA-GTTGTCACT-GGAGAGGGCTTT-AAAGCTCA--CA--  1041

seq1  GCTCAATCTGTTTCTGCTTATGGCTCAGAATGAAGTTCTCAGCTACTTC-  1098
      |||||||||| ||||||||||||||||| ||||   ||||||||||||| 
seq2  GCTCAATCTGGTTCTGCTTATGGCTCAG-ATGA--GTCTCAGCTACTTCT  1088

seq1  TCTCACACAGCCCTGAAAAAGTATCTTTTATTTTGCCTGATGTAACTGTT  1148
      ||||||||||  |||||||   ||  ||||||| ||||||||||  ||||
seq2  TCTCACACAG-GCTGAAAA--GATTCTTTATTTGGCCTGATGTACTTGTT  1135

seq1  GTATCCAAGGCT  1160
      |  |||||||||
seq2  GATTCCAAGGCT  1147


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