BAC Information

Click to search

BAC

Clone NameB6Ng01-274A01
Chromosome12 (Build37)
Map Location 108,295,708 - 108,465,810
singlet/doubletdoublet
Overlap geneLOC100040484, LOC382635
Upstream geneVrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451, LOC673604
Downstream geneLOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk, EG668158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274A01.bB6Ng01-274A01.g
ACCGA075422GA075423
length7861,084
definitionB6Ng01-274A01.b B6Ng01-274A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,465,025 - 108,465,810)(108,295,708 - 108,296,782)
sequence
gaattctcatacagtagaggcagagctggacaggtactgggaactgattc
atttggatttgaatgcttggaataaacattttgaggtttttttttctttt
tgaaaattcttcataattaaattctttcatgattttgccttcagattgcc
acaagccagtccaaagtcccaccaaatgacttcacaggcatcctagttac
actctgttgctgtgttaagtacaacgaccaaaatatatttggagaggaaa
aggtttatttggcttacaggtcacagctcatgctcaagggaacccaagac
agaaagctgaggcaggaacctgaaggcaggaactgaagcagagatggtgg
aggaacactgctttctggcttgctctccactgcaagcccagctgcttcct
tatatcaaccagaaccacctgcctaggagtggtactgcccacagtgggct
gggaccattcacatcaatcattcctcacaccctcccccacccctctcctg
ccatgtgttaccaggctcatctgatgacggaaattcctccaaggagattc
cttctttatagatgacacgagtttatgtcaagttgacccaaagtaagcag
ccctaagcagagtgtgtgtgttgggcatggtatccatatcttttgataga
aatcagtctcctttttcagcatgaaacctaagacatcatggctatgggga
aattgaccaggactgtgttgtctttggttctctatcttgttttaaacgag
agagagagagagagagagagagggagagagagagtg
gaattcagaaatgtggacatcactggagaggagatagagacagaggtggg
atggccacactgctttttcaaaacagagacaaaagtacacacacacacac
acacacacacacactacaaacagggctgtgaagatgactcggaataaggt
aacctgagtccaaagctcacaaaaccaagcatggtaagcagctctgggat
tggcaagagacagatttctcaaaaaataagagcaactgaagaagacattt
aacatcagtttttggactccatacatatacactcatacacacatactaca
cacacacatacacacacacacatacacacacacccccctacttgcacgtg
cacgtgcacgtgcgctcgcacacacacacacacacacacacacacacaca
cacacacacacacacacacatacttataattcataagcaaactgatttta
tgtgcaaggaccaatacccaagccaggccacttctataatgttcaggttg
acatttcttttggatggtgtctaaggctcagcgggtaaagtaacctaagt
tcaaaactcacggaaccaaccatggtaggctctgggatttttcctgttat
gataaaataccctagcaaacacaatttgaaggggaaaaggggggggggtt
attttcctcagggctccaggttacagtccatcattgtggtaaaaccaagg
gagcaggaacttggagcaacaaactacatacacagtcggaagcagagaac
taggaatgaaagagtgaacgagctcaccaaactaattaatgtgtgcttac
tgtactcggcttgtagtctctactttttttacagttcagcttcccctgcc
tagggagtggtgtccaccacagaggatggtctttccattagtcaaagtga
gcccccataagcatgcctacaatccctttagggaaactccctgaaattat
tttaggttcaggttgacaattaaaaccaccatgacttatgggccttcttg
gtcaactatacaacagtctcatcttggaaatatcagcagtgcaaattgta
gaatgttctccttccagggtatgacaaagttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_108465025_108465810
seq2: B6Ng01-274A01.b_33_818 (reverse)

seq1  CACTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCGTTTAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCGTTTAAAACAA  50

seq1  GATAGAGAACCAAAGACAACACAGTCCTGGTCAATTTCCCCATAGCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGAACCAAAGACAACACAGTCCTGGTCAATTTCCCCATAGCCATG  100

seq1  ATGTCTTAGGTTTCATGCTGAAAAAGGAGACTGATTTCTATCAAAAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTAGGTTTCATGCTGAAAAAGGAGACTGATTTCTATCAAAAGATA  150

seq1  TGGATACCATGCCCAACACACACACTCTGCTTAGGGCTGCTTACTTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACCATGCCCAACACACACACTCTGCTTAGGGCTGCTTACTTTGGG  200

seq1  TCAACTTGACATAAACTCGTGTCATCTATAAAGAAGGAATCTCCTTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTGACATAAACTCGTGTCATCTATAAAGAAGGAATCTCCTTGGAG  250

seq1  GAATTTCCGTCATCAGATGAGCCTGGTAACACATGGCAGGAGAGGGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCGTCATCAGATGAGCCTGGTAACACATGGCAGGAGAGGGGTGG  300

seq1  GGGAGGGTGTGAGGAATGATTGATGTGAATGGTCCCAGCCCACTGTGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGTGTGAGGAATGATTGATGTGAATGGTCCCAGCCCACTGTGGGC  350

seq1  AGTACCACTCCTAGGCAGGTGGTTCTGGTTGATATAAGGAAGCAGCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCACTCCTAGGCAGGTGGTTCTGGTTGATATAAGGAAGCAGCTGGG  400

seq1  CTTGCAGTGGAGAGCAAGCCAGAAAGCAGTGTTCCTCCACCATCTCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGTGGAGAGCAAGCCAGAAAGCAGTGTTCCTCCACCATCTCTGCT  450

seq1  TCAGTTCCTGCCTTCAGGTTCCTGCCTCAGCTTTCTGTCTTGGGTTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCTGCCTTCAGGTTCCTGCCTCAGCTTTCTGTCTTGGGTTCCCT  500

seq1  TGAGCATGAGCTGTGACCTGTAAGCCAAATAAACCTTTTCCTCTCCAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGAGCTGTGACCTGTAAGCCAAATAAACCTTTTCCTCTCCAAAT  550

seq1  ATATTTTGGTCGTTGTACTTAACACAGCAACAGAGTGTAACTAGGATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGGTCGTTGTACTTAACACAGCAACAGAGTGTAACTAGGATGCC  600

seq1  TGTGAAGTCATTTGGTGGGACTTTGGACTGGCTTGTGGCAATCTGAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGTCATTTGGTGGGACTTTGGACTGGCTTGTGGCAATCTGAAGGC  650

seq1  AAAATCATGAAAGAATTTAATTATGAAGAATTTTCAAAAAGAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATGAAAGAATTTAATTATGAAGAATTTTCAAAAAGAAAAAAAAA  700

seq1  CCTCAAAATGTTTATTCCAAGCATTCAAATCCAAATGAATCAGTTCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAATGTTTATTCCAAGCATTCAAATCCAAATGAATCAGTTCCCAG  750

seq1  TACCTGTCCAGCTCTGCCTCTACTGTATGAGAATTC  786
      ||||||||||||||||||||||||||||||||||||
seq2  TACCTGTCCAGCTCTGCCTCTACTGTATGAGAATTC  786

seq1: chr12_108295708_108296782
seq2: B6Ng01-274A01.g_67_1150

seq1  GAATTCAGAAATGTGGACATCACTGGAGAGGAGATAGAGACAGAGGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATGTGGACATCACTGGAGAGGAGATAGAGACAGAGGTGGG  50

seq1  ATGGCCACACTGCTTTTTCAAAACAGAGACAAAAGTACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCACACTGCTTTTTCAAAACAGAGACAAAAGTACACACACACACAC  100

seq1  ACACACACACACACTACAAACAGGGCTGTGAAGATGACTCGGAATAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACTACAAACAGGGCTGTGAAGATGACTCGGAATAAGGT  150

seq1  AACCTGAGTCCAAAGCTCACAAAACCAAGCATGGTAAGCAGCTCTGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGTCCAAAGCTCACAAAACCAAGCATGGTAAGCAGCTCTGGGAT  200

seq1  TGGCAAGAGACAGATTTCTCAAAAAATAAGAGCAACTGAAGAAGACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGAGACAGATTTCTCAAAAAATAAGAGCAACTGAAGAAGACATTT  250

seq1  AACATCAGTTTTTGGACTCCATACATATACACTCATACACACATACTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGTTTTTGGACTCCATACATATACACTCATACACACATACTACA  300

seq1  CACACACATACACACACACACATACACACACACCCCCCTACTTGCACGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATACACACACACACATACACACACACCCCCCTACTTGCACGTG  350

seq1  CACGTGCACGTGCGCTCGCACACACACACACACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCACGTGCGCTCGCACACACACACACACACACACACACACACACA  400

seq1  CACACACACACACACACACATACTTATAATTCATAAGCAAACTGATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACATACTTATAATTCATAAGCAAACTGATTTTA  450

seq1  TGTGCAAGGACCAATACCCAAGCCAGGCCACTTCTATAATGTTCAGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAGGACCAATACCCAAGCCAGGCCACTTCTATAATGTTCAGGTTG  500

seq1  ACATTTCTTTTGGATGGTGTCTAAGGCTCAGCGGGTAAAGTAACCTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTTTTGGATGGTGTCTAAGGCTCAGCGGGTAAAGTAACCTAAGT  550

seq1  TCAAAACTCACGGAACCAACCATGGTAGGCTCTGGGATTTTTCCTGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTCACGGAACCAACCATGGTAGGCTCTGGGATTTTTCCTGTTAT  600

seq1  GATAAAATACCCTAGCAAACACAATTTGAAGGGGAAAAGGGGGGGGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATACCCTAGCAAACACAATTTGAAGGGGAAAAGGGGGGGGGGTT  650

seq1  ATTTTCCTCAGGGCTCCAGGTTACAGTCCATCATTGTGGTAAAACCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTCAGGGCTCCAGGTTACAGTCCATCATTGTGGTAAAACCAAGG  700

seq1  GAGCAGGAACTTGGAGCAACAAACTACATACACAGTCGGAAGCAGAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAACTTGGAGCAACAAACTACATACACAGTCGGAAGCAGAGAAC  750

seq1  TAGGAATGAAAGAGTGAACGAGCTCACCAAACTAATTAATGTGTGCTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGAAAGAGTGAACGAGCTCACCAAACTAATTAATGTGTGCTTAC  800

seq1  TGTACTCGGCTTGTAGTCTCTAC-TTTTTTACAGTTCAGCTTCCCCTGCC  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTACTCGGCTTGTAGTCTCTACTTTTTTTACAGTTCAGCTTCCCCTGCC  850

seq1  TAGGGAGTGGTGTCCACCACAGAGGATGGTCTTTCCATTAGTCAAGGTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAGGGAGTGGTGTCCACCACAGAGGATGGTCTTTCCATTAGTCAAAGTGA  900

seq1  GCCCCCATAAGCATGCCTACAATCCC-TTAGGGAAACTCCCTG-AATTAT  947
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  GCCCCCATAAGCATGCCTACAATCCCTTTAGGGAAACTCCCTGAAATTAT  950

seq1  TTTAGGTTCAGGTTGACAATTAAAACCAACCATGACTTAT-GGCCT--CT  994
      ||||||||||||||||||||||||||| |||||||||||| |||||   |
seq2  TTTAGGTTCAGGTTGACAATTAAAACC-ACCATGACTTATGGGCCTTCTT  999

seq1  GGTCAAC-AAACCACAGTTCTCATC-TGGAAATATCCAGGCAGTGCAAA-  1041
      ||||||| | || |||| ||||||| ||||||||||   |||||||||| 
seq2  GGTCAACTATACAACAG-TCTCATCTTGGAAATATC--AGCAGTGCAAAT  1046

seq1  TGTAG-ATG-TCT-CTTCCA-GGTATGACAAAGTCCCT  1075
      ||||| ||| ||| |||||| ||||||||||||| |||
seq2  TGTAGAATGTTCTCCTTCCAGGGTATGACAAAGTTCCT  1084