BAC Information

Click to search

BAC

Clone NameB6Ng01-275E07
Chromosome12 (Build37)
Map Location 118,418,386 - 118,419,512
singlet/doubletsinglet
Overlap genePtprn2
Upstream geneWdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, LOC627375
Downstream geneLOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l, Dnahc11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275E07.bB6Ng01-275E07.g
ACCGA076353GA076354
length1,115777
definitionB6Ng01-275E07.b B6Ng01-275E07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccagacacagtcgggtattctccgggctgtctcccagtatgttc
atgcagcttagttagcatcaccagttatcttctgctcggaagactgtctt
ctcttgcacagttctgtctggacctgcttctcagagcaccgcctgtagga
catgcatgcaatccgtgccacgcttgtcagttgcccacagacacctcagg
tgtgcatggcacagcccctactgttaccaccactgcttcgtgatggatgt
gtgggcgatacaaaccaagggagcacactagtcacctgcagtgcccacag
gatggctgcaaaggctgtggcttcaaatccttacaatataaatgtttatg
ctaactcagcctttcatccttacctgcaggcgaggaagtcctgccgtcgt
gtgcctctctgtgtgcgagctcaccctcttgggcatggacctctctgtgt
gcgagctcaccctctagggcatggatggtgctcttcatggcagcacacag
aggctgcatgcgttacagctttgcagttcttgaagggaacacagaagtat
tcacacctagactatagcagaagcttagatctgcacagagcagccttgga
cctttttttacagatcaatagacttggagaggttggacccaaataagctt
gagaaccggagtttggggactgtaaaaagccaggtgtggggatacatgga
tggattgccagcatgaaggaggcaggagcaagaggatccttggggctcaa
tgattatttagctagctttgtcaaatcagccagctctaattttggtgggc
aaccctatttaaaaaaaaaataaggtggagttggtcctgatgttttaact
ctagcagcagttgggagacagaggcacggggagctctatgtgcttcatat
cagccaaggctactcagtagaccctatcttaaagagagagtagaggaaga
cactgacatgactctgcatatgtatacatagcacatgcacacacacacac
acacacacacacacacaccacatacacgccatagcacagcagaacaggtg
aggggagagttcgcagtggcaaagtaaacatctcaaacaagctagagaga
ttgttctgttccatg

gaattccaaccatcatgtgactaggtttgttaaaaaggtagtttggtgca
aataagctttggcagaagcagcctctgtgtagggaaaagctacttccagc
ctcttgataaatgagacacatttattactaaatagctattgcaatgatct
caggaaagaagccaggggtgggaacccatccaggagggtgatagtctgaa
ttagaaatgatgtgttgcagacttcgtagttccttcctgaaggaaggcat
ggccctaacacacagcacaggcttcgggagctagatccttgagcagcctc
actgtggctctggatgctctttcttttctttcttttccttccttccttcc
ttccttccttccttcctccctccctccctctctctctttcttctttcttt
ctttttcttttccttccttccttccttccttccttccttccttacttact
gactgcatgcgttcgttagttggttagacagacacacgaacaattacctg
cctggactgactgtcgggccagacggaatgagtttattgacaaaacatgc
atgactgactgctggctggctggctgcacgcacgcgggcgtggtggccgc
ccgatcttccttcctcgcggacggaggaagggacgggaaggatggcagtc
acttagccacacacgtctgcctgctctcactcagttcgttcgttatggag
acacagctaagcacagagagtgagtgaggaagatctctcatccagccgca
gcgctcgcatgccatgaatgattaacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_118418386_118419512
seq2: B6Ng01-275E07.b_30_1144

seq1  GAATTCCCAGACACAGTCGGGTATTCTCCGGGCTGTCTCCCAGTATGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGACACAGTCGGGTATTCTCCGGGCTGTCTCCCAGTATGTTC  50

seq1  ATGCAGCTTAGTTAGCATCACCAGTTATCTTCTGCTCGGAAGACTGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTTAGTTAGCATCACCAGTTATCTTCTGCTCGGAAGACTGTCTT  100

seq1  CTCTTGCACAGTTCTGTCTGGACCTGCTTCTCAGAGCACCGCCTGTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCACAGTTCTGTCTGGACCTGCTTCTCAGAGCACCGCCTGTAGGA  150

seq1  CATGCATGCAATCCGTGCCACGCTTGTCAGTTGCCCACAGACACCTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGCAATCCGTGCCACGCTTGTCAGTTGCCCACAGACACCTCAGG  200

seq1  TGTGCATGGCACAGCCCCTACTGTTACCACCACTGCTTCGTGATGGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGGCACAGCCCCTACTGTTACCACCACTGCTTCGTGATGGATGT  250

seq1  GTGGGCGATACAAACCAAGGGAGCACACTAGTCACCTGCAGTGCCCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCGATACAAACCAAGGGAGCACACTAGTCACCTGCAGTGCCCACAG  300

seq1  GATGGCTGCAAAGGCTGTGGCTTCAAATCCTTACAATATAAATGTTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTGCAAAGGCTGTGGCTTCAAATCCTTACAATATAAATGTTTATG  350

seq1  CTAACTCAGCCTTTCATCCTTACCTGCAGGCGAGGAAGTCCTGCCGTCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCAGCCTTTCATCCTTACCTGCAGGCGAGGAAGTCCTGCCGTCGT  400

seq1  GTGCCTCTCTGTGTGCGAGCTCACCCTCTTGGGCATGGACCTCTCTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTCTGTGTGCGAGCTCACCCTCTTGGGCATGGACCTCTCTGTGT  450

seq1  GCGAGCTCACCCTCTAGGGCATGGATGGTGCTCTTCATGGCAGCACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCTCACCCTCTAGGGCATGGATGGTGCTCTTCATGGCAGCACACAG  500

seq1  AGGCTGCATGCGTTACAGCTTTGCAGTTCTTGAAGGGAACACAGAAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCATGCGTTACAGCTTTGCAGTTCTTGAAGGGAACACAGAAGTAT  550

seq1  TCACACCTAGACTATAGCAGAAGCTTAGATCTGCACAGAGCAGCCTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCTAGACTATAGCAGAAGCTTAGATCTGCACAGAGCAGCCTTGGA  600

seq1  CCTTTTTTTACAGATCAATAGACTTGGAGAGGTTGGACCCAAATAAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTACAGATCAATAGACTTGGAGAGGTTGGACCCAAATAAGCTT  650

seq1  GAGAACCGGAGTTTGGGGACTGTAAAAAGCCAGGTGTGGGGATACATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCGGAGTTTGGGGACTGTAAAAAGCCAGGTGTGGGGATACATGGA  700

seq1  TGGATTGCCAGCATGAAGGAGGCAGGAGCAAGAGGATCCTTGGGGCTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCCAGCATGAAGGAGGCAGGAGCAAGAGGATCCTTGGGGCTCAA  750

seq1  TGATTATTTAGCTAGCTTTGTCAAATCAGCCAGCTCTAATTTTGGTGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTTAGCTAGCTTTGTCAAATCAGCCAGCTCTAATTTTGGTGGGC  800

seq1  AACCCTATTTAAAAAAAAAATAAGGTGGAGTTGGTCCTGATGTTTTAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTATTTAAAAAAAAAATAAGGTGGAGTTGGTCCTGATGTTTTAACT  850

seq1  CTAGCAGCAGTTGGGAGACAGAGGCAGGGGGAGCTCTATGTGCTTCATAT  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTAGCAGCAGTTGGGAGACAGAGGCACGGGGAGCTCTATGTGCTTCATAT  900

seq1  CAGCCAAGGCTACTCAGTAAGACCCTATCTTAAAAGAGAGAGGTAGAGGA  950
      |||||||||||||||||| |||||||||||| ||||||||| ||||||||
seq2  CAGCCAAGGCTACTCAGT-AGACCCTATCTT-AAAGAGAGA-GTAGAGGA  947

seq1  AGACACTGACATTGACCTCTGGCATATGTATACATAGCACATGCACACAC  1000
      ||||||||||| ||| |||| |||||||||||||||||||||||||||||
seq2  AGACACTGACA-TGA-CTCT-GCATATGTATACATAGCACATGCACACAC  994

seq1  ACACACACACACACACACACACACACACATACACGCCATAGCACAGCAG-  1049
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  ACACACACACACACACACACACAC-CACATACACGCCATAGCACAGCAGA  1043

seq1  ACAGGTGAGGGGAGAGTCGGCAGTGGAAAGGTAAAACATCTCAAACAAAG  1099
      |||||||||||||||||  ||||||| || || ||||||||||||| |||
seq2  ACAGGTGAGGGGAGAGTTCGCAGTGGCAAAGT-AAACATCTCAAAC-AAG  1091

seq1  CTATAGAGAGATTTGTTTCTGTCCCATG  1127
      |  ||||||||||   |||||| |||||
seq2  C--TAGAGAGATT--GTTCTGTTCCATG  1115


| Home | SequenceCutter | Blast | Download |