BAC Information

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BAC

Clone NameB6Ng01-278H01
Chromosome12 (Build37)
Map Location 38,022,246 - 38,023,269
singlet/doubletsinglet
Overlap geneA530016O06Rik
Upstream geneSostdc1, 4930579E17Rik, LOC638858, Meox2
Downstream geneLOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278H01.bB6Ng01-278H01.g
ACCGA078682GA078683
length1,0351,208
definitionB6Ng01-278H01.b B6Ng01-278H01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctacagagcaggctggacatggattcagagacctgcttgac
tctgcctcctgagagatgggataaagatgcagaccaacatgctgagtttg
aaaaagagtttctcagccaatatgattattttttgttgttttgtttcctc
aacaacttccaggtttcctctggagcactcactccctctcagactcttta
aacatagttgtaaatcacattttacttgggtagatgaagaaaagatgggg
ataaataaaaattcattgtattcatcattcctaaattccttctagctcat
tataaaattttaaaataaacttattctatgctcctactggaaaacaaaaa
caagataaaaaacaataatccatcacaatatataatcaaaataaaataga
aactatataagtgcaaaaaaaccattgaaactataaactatagtagggat
atagtatcagtgagagaagaataatgagatgcaaacttaagcaccctcac
ataagccttgtaatcgagcattgtatcattcggtgcaaggatgttaaatt
tgtgggataaattaatgtattaaataatattcaatgaggcatataatagg
agatatgaatatttttatttcacttgcttaataattttatcatcaattgc
acagtgttcctttttataagccatctgtttgtgcaaaggacttatttata
agttagatagaagatagattgatggatagatatgtaatagataagtagat
aatgagatcgtcagataggtagacagagagatggatgatagatcttaatt
ccttttagaaataacatgactagtcttgaattactgtccatcctgatcta
gaaataacttctttacagaatttcattttgctagaaaccttgaatttcag
actagattctctgtcacatgctgaggggtatgaccgtaatttcctggaga
gaacgggaaaaaaacttcaattttgaaaaagaatacggaaactacatttg
aatccgcaaacatattttgaaataaaagcatgttt

gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctggccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaaac
ctaagatacccaagatataagatacaatttcctaaacacatgaaactcaa
gaaaaatgaagactgaagtgtgaacactatgcccctccttagaagtggga
gcaaaacacccttggaaggagttacagagacaaagtttggagctgagata
aaaggatggaccatgtagacactaccatatccggggatccatcccataat
cagcttccaaatgctgacaccattgcatacactagcaagattatgctgaa
aggaccctgattatagctgtctcttgtcaggagtatgcctggggcctagc
aagcatagaagttggatgctcacagttcggctattggatggatcacatgg
gcccccaatgaaggagctagagaaagtacccaaagaagctaagggatctg
caacactatagtggaacacattatgaactaaccagtacccggagctctga
cctctagctgcatattgcatcaaaagaatgcttagtcgccatcactggga
aagagagccatggaacacgctacctttaattgcccccagttacagaacgc
taggcccctataaatggtaatgttgctgctggcattagcagaacgatagc
ctacgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_38022246_38023269
seq2: B6Ng01-278H01.b_44_1078 (reverse)

seq1  AAACATGCTTTTATTTCAAAATATGTTTGCGGAT--CAATGT-GTTTCC-  46
      ||||||||||||||||||||||||||||||||||   ||||| |||||| 
seq2  AAACATGCTTTTATTTCAAAATATGTTTGCGGATTCAAATGTAGTTTCCG  50

seq1  TA-TCTTTTTC-AAATTGAAGTTTTTTT-CCGTTCTCTCCA-GAAATTAC  92
      || |||||||| |||||||||||||||| |||||||||||| ||||||||
seq2  TATTCTTTTTCAAAATTGAAGTTTTTTTCCCGTTCTCTCCAGGAAATTAC  100

seq1  GGTCATAACCCTCAGCATGTTGACAGAG-ATCTAGTCTGAAAATCA--GG  139
      ||||||| ||||||||||| |||||||| ||||||||||||| |||  | 
seq2  GGTCATACCCCTCAGCATG-TGACAGAGAATCTAGTCTGAAATTCAAGGT  149

seq1  TTCTAGC-AAATGAAATTCTGTAAAGAAGTTATTTCTAGATCAGGATGGA  188
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCAAAATGAAATTCTGTAAAGAAGTTATTTCTAGATCAGGATGGA  199

seq1  CAGTAATTCAAGACTAGTCATGTTATTTCTAAAAGGAATTAAGATCTATC  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTCAAGACTAGTCATGTTATTTCTAAAAGGAATTAAGATCTATC  249

seq1  ATCCATCTCTCTGTCTACCTATCTGACGATCTCATTATCTACTTATCTAT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTCTCTGTCTACCTATCTGACGATCTCATTATCTACTTATCTAT  299

seq1  TACATATCTATCCATCAATCTATCTTCTATCTAACTTATAAATAAGTCCT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCTATCCATCAATCTATCTTCTATCTAACTTATAAATAAGTCCT  349

seq1  TTGCACAAACAGATGGCTTATAAAAAGGAACACTGTGCAATTGATGATAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAAACAGATGGCTTATAAAAAGGAACACTGTGCAATTGATGATAA  399

seq1  AATTATTAAGCAAGTGAAATAAAAATATTCATATCTCCTATTATATGCCT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAAGCAAGTGAAATAAAAATATTCATATCTCCTATTATATGCCT  449

seq1  CATTGAATATTATTTAATACATTAATTTATCCCACAAATTTAACATCCTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATATTATTTAATACATTAATTTATCCCACAAATTTAACATCCTT  499

seq1  GCACCGAATGATACAATGCTCGATTACAAGGCTTATGTGAGGGTGCTTAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGAATGATACAATGCTCGATTACAAGGCTTATGTGAGGGTGCTTAA  549

seq1  GTTTGCATCTCATTATTCTTCTCTCACTGATACTATATCCCTACTATAGT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATCTCATTATTCTTCTCTCACTGATACTATATCCCTACTATAGT  599

seq1  TTATAGTTTCAATGGTTTTTTTGCACTTATATAGTTTCTATTTTATTTTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTTCAATGGTTTTTTTGCACTTATATAGTTTCTATTTTATTTTG  649

seq1  ATTATATATTGTGATGGATTATTGTTTTTTATCTTGTTTTTGTTTTCCAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATTGTGATGGATTATTGTTTTTTATCTTGTTTTTGTTTTCCAG  699

seq1  TAGGAGCATAGAATAAGTTTATTTTAAAATTTTATAATGAGCTAGAAGGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCATAGAATAAGTTTATTTTAAAATTTTATAATGAGCTAGAAGGA  749

seq1  ATTTAGGAATGATGAATACAATGAATTTTTATTTATCCCCATCTTTTCTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGAATGATGAATACAATGAATTTTTATTTATCCCCATCTTTTCTT  799

seq1  CATCTACCCAAGTAAAATGTGATTTACAACTATGTTTAAAGAGTCTGAGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACCCAAGTAAAATGTGATTTACAACTATGTTTAAAGAGTCTGAGA  849

seq1  GGGAGTGAGTGCTCCAGAGGAAACCTGGAAGTTGTTGAGGAAACAAAACA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGAGTGCTCCAGAGGAAACCTGGAAGTTGTTGAGGAAACAAAACA  899

seq1  ACAAAAAATAATCATATTGGCTGAGAAACTCTTTTTCAAACTCAGCATGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAATAATCATATTGGCTGAGAAACTCTTTTTCAAACTCAGCATGT  949

seq1  TGGTCTGCATCTTTATCCCATCTCTCAGGAGGCAGAGTCAAGCAGGTCTC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGCATCTTTATCCCATCTCTCAGGAGGCAGAGTCAAGCAGGTCTC  999

seq1  TGAATCCATGTCCAGCCTGCTCTGTAGAGTGAATTC  1024
      ||||||||||||||||||||||||||||||||||||
seq2  TGAATCCATGTCCAGCCTGCTCTGTAGAGTGAATTC  1035


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