BAC Information

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BAC

Clone NameB6Ng01-278H03
Chromosome12 (Build37)
Map Location 89,701,309 - 89,828,880
singlet/doubletdoublet
Overlap genenone
Upstream geneSptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
Downstream geneLOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278H03.bB6Ng01-278H03.g
ACCGA078686GA078687
length1,1691,114
definitionB6Ng01-278H03.b B6Ng01-278H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,827,677 - 89,828,880)(89,701,309 - 89,702,440)
sequence
gaattccaagctggtctgacattcaaaattcaatcaatgtaactattcct
attagaaaacaaaaataaaaaaaaatattttaaataaatttggaaaaaat
attagaaaatgatttataataaaacttcaggacctgccctcttgactatc
ttcagtcatgtacttctgtttgctcccctcagtggctgtggctccacact
tatactctggttctcagatcctgtcccgatactactcactgccctgtccc
ctcccacccacctaaaatacctaatagtctccagattgtctttctgaaaa
ccaaagagggatattcaggctctcactgacacaatatgagatgtcatcaa
tatttttaaaaagatattcaagaaaaaagtaacaagaaatattctcaagg
aagccctactaaggcaacacatctgaagaataatgtggaacttaaaaaga
tatttggactcagactgcagagatggttcagcagttaagagcactgactg
ctcttccagaggtcctgagttcaattcccagcaagcacatggtggctcac
aaccatctgtaatgggatctgatgccctcttctggtgtgtctgaagacag
tgagaatgtgtccacatacatgaaataaaaaataaatctttttttttttt
aaagttatttggtctcactaaagacttaagagtatatcttactctaattc
ctgaccatctctagaaaaaggttttgattcctttaacagtttggtgaaaa
gtagttcttacaaagatgcagactttctagtgaaggacaaaggaaaaaac
agtttttctaagaaaagaaaagaaaagaaaagaaaccatgaagaaagtgg
gttacataaaaaagaaaaatcgaaagtgctagtgacatggtcataaatgt
catgagtggaactgatgttgctagttcccagctccttagcagtatttccc
agacatcagtattttaccatatcacaatatacattgtcacagccatagca
cacaagagacagagactgagtgagcactgctctcatgaaagcagaaagac
acataaagtcagactctttgttttattgtgctatttattaattaacattc
aatgtatccccgtcaagcttcaacacaccactagtgcgttcgatgcctta
cctgcttctgtagggacct
gaattcttttattttctgaaagaattaattgttcttggtgaccagttgga
tgtacccagggacccaggagagtaattcacaagctctgttattaatcatg
aggatacatgctgcatattctattttatggtgttttttatatccactgac
gtaaatataaatgtcctttctgtttaagataatggtctcttttcactttg
gatgtaatggttggcttactctggaatttaaaacatcagcatgttgcctc
taggtctgataaccagaacagtttccaggcacaggaaaggtaaaaaccgg
aagtttgaaaatctaggagaagtatgacacttatgcgtggcttcccacag
tactggagacacactatgcatgctccttgagttatcttgtgtgcttgagc
agagtgtctatacatacccagcacacagataccctggcctttggatagta
aggatacacatgttgggagtcttggcagactttgtggttttcagggggtt
tgaactcattttgaaaagttgcatatgcatctactggctcataggagata
cttcaaggatggccaggttgatagccacggtgtatcttctctacagcagg
atcagagctgctcagccactgcaggcttataggggccttcttgctactgc
acagggataccctagtaggacagagttgctctaagaggcccccaagcaga
ttctgagtagtggagctgatgccaggcttgcggcagctcttagggtgggc
acctatgggaagggtgatgatggtggcaactgtggctggagcaagagatg
ggttctgagccagggtgtgacctgcaagttcagaaccagcagatgactaa
aaccagagtgtggtacgttcctggcagtggggccgtgggctgcattgacc
acactggccatatgggagggtccgtacttaacaggaggtcttgaacacca
aatgaccaggtactactgttcctgcttggtgaactgagatgctccagcag
tcatgttggcacactgctctactgccccctccccacatgtctcttcttct
tctcttttctttccccctcttctctctgcgtactctagggctcagctgtc
tttagctgaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89827677_89828880
seq2: B6Ng01-278H03.b_45_1213 (reverse)

seq1  AGGTCCCTTACAGAAGCAGGGGGAGAGGGTATGGGAT--AGGGGATTTGT  48
      ||||||| ||||||||||         |||| || ||  |  | | | ||
seq2  AGGTCCC-TACAGAAGCA---------GGTAAGGCATCGAACGCACTAGT  40

seq1  GTGTGTG-TGGAGCTGGGAAGGGGGATAACATTTGAAATGTAAATAAATA  97
      | ||||| || |||| |  | |||||| |||||   ||||| ||| ||| 
seq2  G-GTGTGTTGAAGCTTG--ACGGGGAT-ACATT--GAATGTTAATTAAT-  83

seq1  AAATAGCCAACAATAAAAACAAAGATGTCCTTGAACTTTATGTGTCCTTT  147
      |||||||  ||||| |||||||||| |||  || ||||||||||||   |
seq2  AAATAGC--ACAAT-AAAACAAAGA-GTC--TG-ACTTTATGTGTC---T  123

seq1  TCCTGCTTTTCATGAGAGCAGTGCTCCACCTCAGTTCTCTTGTCTTCCTT  197
      | |||| |||||||||||||||||||   ||||| |||| |||||  |||
seq2  TTCTGC-TTTCATGAGAGCAGTGCTC--ACTCAG-TCTC-TGTCT--CTT  166

seq1  GGTTGTGCTATGGCTTGTGACAATGTTATATTGTGATATGGTAAAATACT  247
      |  ||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  G--TGTGCTATGGC-TGTGACAATG-TATATTGTGATATGGTAAAATACT  212

seq1  GATGTCTGGGAAATACTGCTAAGGAGCTGGGAACTAGCAACATCAGTTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGGGAAATACTGCTAAGGAGCTGGGAACTAGCAACATCAGTTCC  262

seq1  ACTCATGACATTTATGACCATGTCACTAGCACTTTCGATTTTTCTTTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGACATTTATGACCATGTCACTAGCACTTTCGATTTTTCTTTTTT  312

seq1  ATGTAACCCACCTTCTTCATGGTTTCTTTTCTTTTCTTTTCTTTTCTTAG  397
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACCCACTTTCTTCATGGTTTCTTTTCTTTTCTTTTCTTTTCTTAG  362

seq1  AAAAACTGTTTTTTCCTTTGTCCTTCACTAGAAAGTCTGCATCTTTGTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGTTTTTTCCTTTGTCCTTCACTAGAAAGTCTGCATCTTTGTAA  412

seq1  GAACTACTTTTCACCAAACTGTTAAAGGAATCAAAACCTTTTTCTAGAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACTTTTCACCAAACTGTTAAAGGAATCAAAACCTTTTTCTAGAGA  462

seq1  TGGTCAGGAATTAGAGTAAGATATACTCTTAAGTCTTTAGTGAGACCAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGAATTAGAGTAAGATATACTCTTAAGTCTTTAGTGAGACCAAA  512

seq1  TAACTTTAAAAAAAAAAAAGATTTATTTTTTATTTCATGTATGTGGACAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTAAAAAAAAAAAAGATTTATTTTTTATTTCATGTATGTGGACAC  562

seq1  ATTCTCACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACA  612

seq1  GATGGTTGTGAGCCACCATGTGCTTGCTGGGAATTGAACTCAGGACCTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGTGAGCCACCATGTGCTTGCTGGGAATTGAACTCAGGACCTCT  662

seq1  GGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTGCAGTCTGAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCAGTCAGTGCTCTTAACTGCTGAACCATCTCTGCAGTCTGAGT  712

seq1  CCAAATATCTTTTTAAGTTCCACATTATTCTTCAGATGTGTTGCCTTAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATCTTTTTAAGTTCCACATTATTCTTCAGATGTGTTGCCTTAGT  762

seq1  AGGGCTTCCTTGAGAATATTTCTTGTTACTTTTTTCTTGAATATCTTTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCCTTGAGAATATTTCTTGTTACTTTTTTCTTGAATATCTTTTT  812

seq1  AAAAATATTGATGACATCTCATATTGTGTCAGTGAGAGCCTGAATATCCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTGATGACATCTCATATTGTGTCAGTGAGAGCCTGAATATCCC  862

seq1  TCTTTGGTTTTCAGAAAGACAATCTGGAGACTATTAGGTATTTTAGGTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTTTTCAGAAAGACAATCTGGAGACTATTAGGTATTTTAGGTGG  912

seq1  GTGGGAGGGGACAGGGCAGTGAGTAGTATCGGGACAGGATCTGAGAACCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGGGGACAGGGCAGTGAGTAGTATCGGGACAGGATCTGAGAACCA  962

seq1  GAGTATAAGTGTGGAGCCACAGCCACTGAGGGGAGCAAACAGAAGTACAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAAGTGTGGAGCCACAGCCACTGAGGGGAGCAAACAGAAGTACAT  1012

seq1  GACTGAAGATAGTCAAGAGGGCAGGTCCTGAAGTTTTATTATAAATCATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAGATAGTCAAGAGGGCAGGTCCTGAAGTTTTATTATAAATCATT  1062

seq1  TTCTAATATTTTTTCCAAATTTATTTAAAATATTTTTTTTTATTTTTGTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATATTTTTTCCAAATTTATTTAAAATATTTTTTTTTATTTTTGTT  1112

seq1  TTCTAATAGGAATAGTTACATTGATTGAATTTTGAATGTCAGACCAGCTT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATAGGAATAGTTACATTGATTGAATTTTGAATGTCAGACCAGCTT  1162

seq1  GGAATTC  1204
      |||||||
seq2  GGAATTC  1169

seq1: chr12_89701309_89702440
seq2: B6Ng01-278H03.g_63_1176

seq1  GAATTCTTTTATTTTCTGAAAGAATTAATTGTTCTTGGTGACCAGTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATTTTCTGAAAGAATTAATTGTTCTTGGTGACCAGTTGGA  50

seq1  TGTACCCAGGGACCCAGGAGAGTAATTCACAAGCTCTGTTATTAATCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCAGGGACCCAGGAGAGTAATTCACAAGCTCTGTTATTAATCATG  100

seq1  AGGATACATGCTGCATATTCTATTTTATGGTGTTTTTTATATCCACTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACATGCTGCATATTCTATTTTATGGTGTTTTTTATATCCACTGAC  150

seq1  GTAAATATAAATGTCCTTTCTGTTTAAGATAATGGTCTCTTTTCACTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATAAATGTCCTTTCTGTTTAAGATAATGGTCTCTTTTCACTTTG  200

seq1  GATGTAATGGTTGGCTTACTCTGGAATTTAAAACATCAGCATGTTGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATGGTTGGCTTACTCTGGAATTTAAAACATCAGCATGTTGCCTC  250

seq1  TAGGTCTGATAACCAGAACAGTTTCCAGGCACAGGAAAGGTAAAAACCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTGATAACCAGAACAGTTTCCAGGCACAGGAAAGGTAAAAACCGG  300

seq1  AAGTTTGAAAATCTAGGAGAAGTATGACACTTATGCGTGGCTTCCCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGAAAATCTAGGAGAAGTATGACACTTATGCGTGGCTTCCCACAG  350

seq1  TACTGGAGACACACTATGCATGCTCCTTGAGTTATCTTGTGTGCTTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAGACACACTATGCATGCTCCTTGAGTTATCTTGTGTGCTTGAGC  400

seq1  AGAGTGTCTATACATACCCAGCACACAGATACCCTGGCCTTTGGATAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTCTATACATACCCAGCACACAGATACCCTGGCCTTTGGATAGTA  450

seq1  AGGATACACATGTTGGGAGTCTTGGCAGACTTTGTGGTTTTCAGGGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACACATGTTGGGAGTCTTGGCAGACTTTGTGGTTTTCAGGGGGTT  500

seq1  TGAACTCATTTTGAAAAGTTGCATATGCATCTACTGGCTCATAGGAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCATTTTGAAAAGTTGCATATGCATCTACTGGCTCATAGGAGATA  550

seq1  CTTCAAGGATGGCCAGGTTGATAGCCACGGTGTATCTTCTCTACAGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGGATGGCCAGGTTGATAGCCACGGTGTATCTTCTCTACAGCAGG  600

seq1  ATCAGAGCTGCTCAGCCACTGCAGGCTTATAGGGGCCTTCTTGCTACTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGCTGCTCAGCCACTGCAGGCTTATAGGGGCCTTCTTGCTACTGC  650

seq1  ACAGGGATACCCTAGTAGGACAGAGTTGCTCTAAGAGGCCCCCAAGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGATACCCTAGTAGGACAGAGTTGCTCTAAGAGGCCCCCAAGCAGA  700

seq1  TTCTGAGTAGTGGAGCTGATGCCAGGCTTGCGGCAGCTCTTAGGGTGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTAGTGGAGCTGATGCCAGGCTTGCGGCAGCTCTTAGGGTGGGC  750

seq1  ACCTATGGGAAGGGTGATGATGGTGGCAACTGTGGCTGGAGCAAGAGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGGGAAGGGTGATGATGGTGGCAACTGTGGCTGGAGCAAGAGATG  800

seq1  GGTTCTGAGCCAGGGTGTGACCTGCAAGTTCAGAACCAGCAGGATGACTA  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGTTCTGAGCCAGGGTGTGACCTGCAAGTTCAGAACCAGCA-GATGACTA  849

seq1  AAACCAGAGTGTGGTACGTTCCTGGCAGTGGGGCCGTGGGCTGCATTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGAGTGTGGTACGTTCCTGGCAGTGGGGCCGTGGGCTGCATTGAC  899

seq1  CACACTGGCCATATGGGAGGGTCCGTACTTAACAGGAGGTCTTGAACACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGGCCATATGGGAGGGTCCGTACTTAACAGGAGGTCTTGAACACC  949

seq1  AAATGACCAGGTACTACTGTTCCTGCTTGGTGAACTGAGGAAGGCTCCAG  1000
      |||||||||||||||||||||||||||||||||||||||  | |||||||
seq2  AAATGACCAGGTACTACTGTTCCTGCTTGGTGAACTGAG--ATGCTCCAG  997

seq1  CAGTCATGTTTGGCAACCACTGCCTCTACTGCCCCCTCCCCACATTGTCC  1050
      |||||||| ||||||  ||||| ||||||||||||||||||||| |||| 
seq2  CAGTCATG-TTGGCA--CACTG-CTCTACTGCCCCCTCCCCACA-TGTC-  1041

seq1  TCCTTTCCTTTTCCTTCTCTTTCTTTCCCCCCTCCTTCCTCTCTGCCGTA  1100
             ||| | |||||||||  || |||||||  | ||||||| ||||
seq2  ------TCTTCTTCTTCTCTTTTCTTTCCCCCTC--TTCTCTCTG-CGTA  1082

seq1  CTCTAGGGCTCAGGCTGTCTTTAGCTG-AGGAA  1132
      |||||||||||| |||||||||||||| |||||
seq2  CTCTAGGGCTCA-GCTGTCTTTAGCTGAAGGAA  1114