BAC Information

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BAC

Clone NameB6Ng01-280H13
Chromosome12 (Build37)
Map Location 101,088,080 - 101,089,208
singlet/doubletsinglet
Overlap gene2610021K21Rik
Upstream geneEml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892
Downstream geneTdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b, Rps6ka5, LOC100040123, 9030617O03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280H13.bB6Ng01-280H13.g
ACCGA080188GA080189
length1,1231,148
definitionB6Ng01-280H13.b B6Ng01-280H13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagcaggacaagagttccttgtgtcttgagggtctagggggaaa
ctggatctttcaatctaatgactgccaggttcttccagagaaatgtctag
agagcaaaagtagtcagcttcagaggtgaccaccctagttacgttctcag
tgtataaaccaagtcagactcacagagaatcagttataagaccaagtaca
caaagagcaaagccaaaaccctctgagacccgatgcagcagagatagttt
accttccaacttgataagaatgtcggcatgttcataattagttcagaatg
ccacaggaacaaaataagatatttttataatactggtgaatagttggcca
ttttgttgatgtttttagtggttatattataactgaaagcaatttggttt
tcaatatatgtatttatttctaaaattcgtgttctggctgctctgtagcc
attgcctcttcctttactgtcttgttagtcctacagttaggtgaattcaa
agctcgtctctgactcatgttctatacgtttgcttctaagaatcgcaaaa
accatgtttccaattaccttttatgttcagcagttggaacattgtacttg
aataaaattatataatgagtcaatgctaaaatttcttagtcaactttttt
ttctatgaaattctggtttgtttatgttgaaagtcctttttaaagttttt
tttttgatattaaattatttgtaggcatgtgcgtttgtgtgagggtttgt
gcatgtaagtgtagttgcctatggaggccaaaagagggcattagattccc
tggaacaggagttagagttgtgaaatcgtctcaccatgctttctagtatg
tttcctgtaatgtctgtctccatgtgtgacctggccatgtgtgacctggc
catgtgtgacctggccatgtgtgacctggccatgtgtgacttgcccatgt
gtgacctggccatgtgtgacttggcccattgtggctttccttgtctgatt
tgcttgtggctttgccttctgtttctttgtgaagctataccaaactgaac
tctgtcctttcggttacttgctgatcttgcttaaactccctatggcaatt
tatggtgtggttttcaatctcat
gaattctctgtttagaactgtaccccattttaaattgggctattattttt
cttgatgtctaattttttgaatttttatatattttggatattaggcttct
attagatgtatagttgctaaaaaaattatttttccattctgcaggttgcc
agtgtcctttgctgtatagaagcttttcagtttcatgaggtcccacatat
taattgtttatcttagtgcatgtgttaatggtgtcctgttcgcaaagtct
tttcctgtgtcaatgagttcaaggctattccctactttcttctcggttag
gttcagtgtatcttgttttatgttgaggctttagatcaatttggagttga
gtattttgcagggtaataagtatggacctattagcattgtttctcataca
gccattcggtttgactggcaccatttgtcgaagattctgtgctttttttt
ccagtgagatatttctagaatctttataaaaaatgaggtgatcataggct
atcttagtcagggtttctattcctgcacaaacatcatgaccaagaagcag
ttggggaagaaaaggtttattcagcttacacttccacattgctgttgatt
accaaaggaagtcaggactggaattcaagcaggtcagaaagcaggaactg
atgtagaggccagggtgggattttctttactggcttgcttcccttggctt
gctcagcctgctctcttatagaacgcaagattaccagcccagggatggtc
ccacccacaagggcctttcccccttgatcactaattgagaaaatgcccca
cagctggatctcatggaagcacttccccaactgaaacctcctttcctctg
gtgaataactccagcttggttgtcaagttaacaacacaaaaaccaagcca
agtacataggcgcatggatttgttcctggaatcttcagttgagttctatt
gatcaattatgttcgtttctggccagatacatgctagggttaattactat
aagcctttgtggtccacggtacacggtggtgtgataaacttccgaaactc
ttttacattccagaatggtttacttttcctggattgttggtatatggttt
ccgatgaagcggattcttgtgatctggaaaaatgtgtgtgacttatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_101088080_101089208
seq2: B6Ng01-280H13.b_42_1164 (reverse)

seq1  ATGAGATTGAAAA-CACA-CATAAA-TGGCATAGAGGAGATATTATAAAG  47
      ||||||||||||| |||| |||||| || ||||| ||||      | |||
seq2  ATGAGATTGAAAACCACACCATAAATTGCCATAG-GGAG-----TTTAAG  44

seq1  CAAGAATACAGCAAAGTAA-CGAAAGGACAGGAAGTATCAG-TTGGTATA  95
      |||||   |||| |||||| |||||||||||  ||| |||| ||||||||
seq2  CAAGA--TCAGC-AAGTAACCGAAAGGACAG--AGT-TCAGTTTGGTATA  88

seq1  GCTCAACAAAGAAACAGAAGGCAAAGCCACAAGCAAATCAGACAAGGAAA  145
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACAAAGAAACAGAAGGCAAAGCCACAAGCAAATCAGACAAGGAAA  138

seq1  GCCACAAT-GGCCAGGTCACACATGGCCAGGTCACACATGGCCAGGTCAC  194
      |||||||| ||||| |||||||||||||||||||||||||| || |||||
seq2  GCCACAATGGGCCAAGTCACACATGGCCAGGTCACACATGGGCAAGTCAC  188

seq1  ACATGGCCAGGTCACACATGGCCAGGTCACACATGGCCAGGTCACACATG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCCAGGTCACACATGGCCAGGTCACACATGGCCAGGTCACACATG  238

seq1  GCCAGGTCACACATGGAGACAGACATTACAGGAAACATACTAGAAAGCAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTCACACATGGAGACAGACATTACAGGAAACATACTAGAAAGCAT  288

seq1  GGTGAGACGATTTCACAACTCTAACTCCTGTTCCAGGGAATCTAATGCCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGACGATTTCACAACTCTAACTCCTGTTCCAGGGAATCTAATGCCC  338

seq1  TCTTTTGGCCTCCATAGGCAACTACACTTACATGCACAAACCCTCACACA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGCCTCCATAGGCAACTACACTTACATGCACAAACCCTCACACA  388

seq1  AACGCACATGCCTACAAATAATTTAATATCAAAAAAAAAACTTTAAAAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCACATGCCTACAAATAATTTAATATCAAAAAAAAAACTTTAAAAAG  438

seq1  GACTTTCAACATAAACAAACCAGAATTTCATAGAAAAAAAAGTTGACTAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCAACATAAACAAACCAGAATTTCATAGAAAAAAAAGTTGACTAA  488

seq1  GAAATTTTAGCATTGACTCATTATATAATTTTATTCAAGTACAATGTTCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTAGCATTGACTCATTATATAATTTTATTCAAGTACAATGTTCC  538

seq1  AACTGCTGAACATAAAAGGTAATTGGAAACATGGTTTTTGCGATTCTTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGAACATAAAAGGTAATTGGAAACATGGTTTTTGCGATTCTTAG  588

seq1  AAGCAAACGTATAGAACATGAGTCAGAGACGAGCTTTGAATTCACCTAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACGTATAGAACATGAGTCAGAGACGAGCTTTGAATTCACCTAAC  638

seq1  TGTAGGACTAACAAGACAGTAAAGGAAGAGGCAATGGCTACAGAGCAGCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGACTAACAAGACAGTAAAGGAAGAGGCAATGGCTACAGAGCAGCC  688

seq1  AGAACACGAATTTTAGAAATAAATACATATATTGAAAACCAAATTGCTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACGAATTTTAGAAATAAATACATATATTGAAAACCAAATTGCTTT  738

seq1  CAGTTATAATATAACCACTAAAAACATCAACAAAATGGCCAACTATTCAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATAATATAACCACTAAAAACATCAACAAAATGGCCAACTATTCAC  788

seq1  CAGTATTATAAAAATATCTTATTTTGTTCCTGTGGCATTCTGAACTAATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTATAAAAATATCTTATTTTGTTCCTGTGGCATTCTGAACTAATT  838

seq1  ATGAACATGCCGACATTCTTATCAAGTTGGAAGGTAAACTATCTCTGCTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATGCCGACATTCTTATCAAGTTGGAAGGTAAACTATCTCTGCTG  888

seq1  CATCGGGTCTCAGAGGGTTTTGGCTTTGCTCTTTGTGTACTTGGTCTTAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGGTCTCAGAGGGTTTTGGCTTTGCTCTTTGTGTACTTGGTCTTAT  938

seq1  AACTGATTCTCTGTGAGTCTGACTTGGTTTATACACTGAGAACGTAACTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTCTCTGTGAGTCTGACTTGGTTTATACACTGAGAACGTAACTA  988

seq1  GGGTGGTCACCTCTGAAGCTGACTACTTTTGCTCTCTAGACATTTCTCTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTCACCTCTGAAGCTGACTACTTTTGCTCTCTAGACATTTCTCTG  1038

seq1  GAAGAACCTGGCAGTCATTAGATTGAAAGATCCAGTTTCCCCCTAGACCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACCTGGCAGTCATTAGATTGAAAGATCCAGTTTCCCCCTAGACCC  1088

seq1  TCAAGACACAAGGAACTCTTGTCCTGCTGGAATTC  1129
      |||||||||||||||||||||||||||||||||||
seq2  TCAAGACACAAGGAACTCTTGTCCTGCTGGAATTC  1123