BAC Information

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BAC

Clone NameB6Ng01-281H03
Chromosome12 (Build37)
Map Location 41,294,446 - 41,320,020
singlet/doubletdoublet
Overlap geneDock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281H03.bB6Ng01-281H03.g
ACCGA080920GA080921
length1,1451,086
definitionB6Ng01-281H03.b B6Ng01-281H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,294,446 - 41,295,599)(41,318,937 - 41,320,020)
sequence
gaattcataaacctccaggatcttgtagctagaaggcatacggggcgggc
taacagagctcaaatcattgactttttgttctgacactgcttatttgttt
gtttgtttttttctttttattcatttccaggtgtgaattagggcttaaga
tcttgatgtgtcttcattttggctgtttattttagtaaaactctgttagg
acagcctgtgacttcagatagtcttccagtctttgtctgaggaatccata
cattcagctccttgggttctgccaactttactccattctaaaagtcagtg
tgactgaaacacactcttagtcttttccctcagaagtctgtcagtcactg
gtgtcatcacttccttctgagatactgatgtcccttccttcttcctgtgt
actgagatcaaatggcacacaccttttattccagtgcttaaggaggcaat
gcaggcagatctctgagtcttgtctccatagcaagttccaggacatccag
ggctacatagtgagactttgtttccaacagaaaaccacacacaaagaaaa
caactaacaaactaaccagacagaagctctttccagagaaagccacctat
ttacccccagcttagctggggtagctctctcttgcttccaccctttgctg
ttcctttctatgccgctaaacatttccaggtgcgcatcctttctctgcta
cacagcactgaactggcttctcttactctatggctggtgtcaggtgtcca
tctgcttctgtttgcacagccacctttgacaacagcagcagccaggggta
ccaccaacaaaaaagtctctactgtgtgggcatcgctccattcagtcctc
ccagcaactgtgtgaggtagctggcgttttctccatttcacacacaagga
cagatggagacttttttttttcccccctaaatcttcccaatgagagttag
aattgaaagtcaatgaatcattccctactgtaggtccctgcccttttatt
acagcactctatgactcctctcattagctgagtatcccttggaagcaaaa
atgcatgttaatacagttgccctgagtttaaagagaaatgactacggtgg
agctttatactgacttcagtacatatcaggctaacttttctcaga

gaattccaggtcaagagaggctctgtcccaaagaaaagaatagacaacac
atgaagacagacactcaagactgtcctctggccttcacagccatgtacat
atatgaacccacagacacatcaacagcacacacatacataaacacaccga
tactatggaaaaaaacagtacattgtcttaaaaatgaacaggctggggaa
aggattaaaatcccagcatggctcagaatctagcatatggactccgcaga
gcacctaaggtctcctgtaaactggggtatagaagaaagaagctgaactg
gaatttccagagggcagggaggacctctgagacccacgggcagagtttag
catgctgctttatgtgacatacaagacagcaagcaaactttgttgggctg
agtcaaattattggtggcaacacacattgagcaggggagaactgatattt
ttcagaagaggaacactaaggcagcatagccataacttatgtgtgccctg
gacaaagatgaagagggagaatttctaagatgcagagacgtccatgtgaa
atttgcaaaatctcagacatgccagcctgggtaaacatccgagactcctg
ttaatgactgcactctcaggcagcctgcaaactgaaggtggggatttgga
aacaaactatgccccaagaaattagaaacagtagaagttaactcaagtct
acttgatggaatcaaagaagcaactatggaaagttgtccacgctgcatag
aaatgatgaacagaggataactctgaaaatatactaaaatataatggggg
tgaggggccgcattagaaagacaaatgtggagccatgagtgaaagaaaca
ttatccaagaaacagaagatggcttccagatcctagaagacttctttaaa
ctgcacagaacatctgtagtttctgagcaaatactgaaatgaggaaaaca
gaatcaatgactgaagggagaggagacatcaaaatcaggaagcatcacag
gaaaatgcacgccacaggtggagaggacacaaaaccttagccgagaaaaa
gacgacaaacagcctgtactggagtgcttcaaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41294446_41295599
seq2: B6Ng01-281H03.b_45_1189

seq1  GAATTCATAAACCTCCAGGATCTTGTAGCTAGAAGGCATACGGGGCGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAACCTCCAGGATCTTGTAGCTAGAAGGCATACGGGGCGGGC  50

seq1  TAACAGAGCTCAAATCATTGACTTTTTGTTCTGACACTGCTTATTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGCTCAAATCATTGACTTTTTGTTCTGACACTGCTTATTTGTTT  100

seq1  GTTTGTTTTTTTCTTTTTATTCATTTCCAGGTGTGAATTAGGGCTTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTTTTCTTTTTATTCATTTCCAGGTGTGAATTAGGGCTTAAGA  150

seq1  TCTTGATGTGTCTTCATTTTGGCTGTTTATTTTAGTAAAACTCTGTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGTGTCTTCATTTTGGCTGTTTATTTTAGTAAAACTCTGTTAGG  200

seq1  ACAGCCTGTGACTTCAGATAGTCTTCCAGTCTTTGTCTGAGGAATCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGTGACTTCAGATAGTCTTCCAGTCTTTGTCTGAGGAATCCATA  250

seq1  CATTCAGCTCCTTGGGTTCTGCCAACTTTACTCCATTCTAAAAGTCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGCTCCTTGGGTTCTGCCAACTTTACTCCATTCTAAAAGTCAGTG  300

seq1  TGACTGAAACACACTCTTAGTCTTTTCCCTCAGAAGTCTGTCAGTCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAAACACACTCTTAGTCTTTTCCCTCAGAAGTCTGTCAGTCACTG  350

seq1  GTGTCATCACTTCCTTCTGAGATACTGATGTCCCTTCCTTCTTCCTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATCACTTCCTTCTGAGATACTGATGTCCCTTCCTTCTTCCTGTGT  400

seq1  ACTGAGATCAAATGGCACACACCTTTTATTCCAGTGCTTAAGGAGGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATCAAATGGCACACACCTTTTATTCCAGTGCTTAAGGAGGCAAT  450

seq1  GCAGGCAGATCTCTGAGTCTTGTCTCCATAGCAAGTTCCAGGACATCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGATCTCTGAGTCTTGTCTCCATAGCAAGTTCCAGGACATCCAG  500

seq1  GGCTACATAGTGAGACTTTGTTTCCAACAGAAAACCACACACAAAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACATAGTGAGACTTTGTTTCCAACAGAAAACCACACACAAAGAAAA  550

seq1  CAACTAACAAACTAACCAGACAGAAGCTCTTTCCAGAGAAAGCCACCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAACAAACTAACCAGACAGAAGCTCTTTCCAGAGAAAGCCACCTAT  600

seq1  TTACCCCCAGCTTAGCTGGGGTAGCTCTCTCTTGCTTCCACCCTTTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCCAGCTTAGCTGGGGTAGCTCTCTCTTGCTTCCACCCTTTGCTG  650

seq1  TTCCTTTCTATGCCGCTAAACATTTCCAGGTGCGCATCCTTTCTCTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTATGCCGCTAAACATTTCCAGGTGCGCATCCTTTCTCTGCTA  700

seq1  CACAGCACTGAACTGGCTTCTCTTACTCTATGGCTGGTGTCAGGTGTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACTGAACTGGCTTCTCTTACTCTATGGCTGGTGTCAGGTGTCCA  750

seq1  TCTGCTTCTGTTTGCACAGCCACCTTTGACAACAGCAGCAGCCAGGGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCTGTTTGCACAGCCACCTTTGACAACAGCAGCAGCCAGGGGTA  800

seq1  CCACCAACAAAAAAGTCTCTACTGTGTGGGCATCGCTCCATTCAGTCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAACAAAAAAGTCTCTACTGTGTGGGCATCGCTCCATTCAGTCCTC  850

seq1  CCAGCAACTGTGTGAGGTAGCTGGCGTTTTCTCCATTTCACACACAAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACTGTGTGAGGTAGCTGGCGTTTTCTCCATTTCACACACAAGGA  900

seq1  CAGATGGAGAC-TTTTTTTTTCCCCCCTAAATCTT-CCAATGAGAGTTAG  948
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  CAGATGGAGACTTTTTTTTTTCCCCCCTAAATCTTCCCAATGAGAGTTAG  950

seq1  AATTGAAAGTCAATGAAATCATT-CCTACTGTAAGGTCCTGCCTTTTAAT  997
      ||||||||||||||| ||||||| ||||||||| |  |||||| ||| ||
seq2  AATTGAAAGTCAATG-AATCATTCCCTACTGTAGGTCCCTGCCCTTTTAT  999

seq1  TACAGCACTCTATGACTCCTCTCATTAGGCTGAGTATCCCTT-GAAGCAA  1046
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  TACAGCACTCTATGACTCCTCTCATTA-GCTGAGTATCCCTTGGAAGCAA  1048

seq1  AAATTGCATGTTTAATTACAGTTG-CCTGAGTTTAAAGGAGAAATGGACT  1095
      ||| ||||||||  | |||||||| |||||||||||| ||||||| ||||
seq2  AAA-TGCATGTT--AATACAGTTGCCCTGAGTTTAAA-GAGAAAT-GACT  1093

seq1  ACGGGTGGAGCTTTTATAACTGAC-TCAGGTTACATATCCAAGGCTAACT  1144
      || |||||||| ||||| |||||| ||||  ||||||||  |||||||| 
seq2  AC-GGTGGAGC-TTTAT-ACTGACTTCAG--TACATATC--AGGCTAAC-  1135

seq1  TTTTCTCAGA  1154
      ||||||||||
seq2  TTTTCTCAGA  1145


seq1: chr12_41318937_41320020
seq2: B6Ng01-281H03.g_65_1150 (reverse)

seq1  CCTTTTGAAGCACT-CAGTACA-GCTGTTTGTCGTC-TTTTCTCGGCTAA  47
      |||||||||||||| ||||||| ||||||||||||| |||||||||||||
seq2  CCTTTTGAAGCACTCCAGTACAGGCTGTTTGTCGTCTTTTTCTCGGCTAA  50

seq1  GGTTTTGTGTCCTCT-CACCTGTGGCGTGCATTTTCCTGTTGGTGCTTTC  96
      ||||||||||||||| ||||||||||||||||||||||| || ||||| |
seq2  GGTTTTGTGTCCTCTCCACCTGTGGCGTGCATTTTCCTG-TGATGCTTCC  99

seq1  TGATTTTGATGTCTCCTCTCCCTTCAGTCATTTGATTCTGTTTTCCTCAT  146
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGATTTTGATGTCTCCTCTCCCTTCAGTCA-TTGATTCTGTTTTCCTCAT  148

seq1  TTCAGTATTTGCTCAGAAACTACAGATGTTCTGTGCAGTTTAAAGAAGTC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATTTGCTCAGAAACTACAGATGTTCTGTGCAGTTTAAAGAAGTC  198

seq1  TTCTAGGATCTGGAAGCCATCTTCTGTTTCTTGGATAATGTTTCTTTCAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGATCTGGAAGCCATCTTCTGTTTCTTGGATAATGTTTCTTTCAC  248

seq1  TCATGGCTCCACATTTGTCTTTCTAATGCGGCCCCTCACCCCCATTATAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTCCACATTTGTCTTTCTAATGCGGCCCCTCACCCCCATTATAT  298

seq1  TTTAGTATATTTTCAGAGTTATCCTCTGTTCATCATTTCTATGCAGCGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATATTTTCAGAGTTATCCTCTGTTCATCATTTCTATGCAGCGTG  348

seq1  GACAACTTTCCATAGTTGCTTCTTTGATTCCATCAAGTAGACTTGAGTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTTTCCATAGTTGCTTCTTTGATTCCATCAAGTAGACTTGAGTTA  398

seq1  ACTTCTACTGTTTCTAATTTCTTGGGGCATAGTTTGTTTCCAAATCCCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTACTGTTTCTAATTTCTTGGGGCATAGTTTGTTTCCAAATCCCCA  448

seq1  CCTTCAGTTTGCAGGCTGCCTGAGAGTGCAGTCATTAACAGGAGTCTCGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTTTGCAGGCTGCCTGAGAGTGCAGTCATTAACAGGAGTCTCGG  498

seq1  ATGTTTACCCAGGCTGGCATGTCTGAGATTTTGCAAATTTCACATGGACG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACCCAGGCTGGCATGTCTGAGATTTTGCAAATTTCACATGGACG  548

seq1  TCTCTGCATCTTAGAAATTCTCCCTCTTCATCTTTGTCCAGGGCACACAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCATCTTAGAAATTCTCCCTCTTCATCTTTGTCCAGGGCACACAT  598

seq1  AAGTTATGGCTATGCTGCCTTAGTGTTCCTCTTCTGAAAAATATCAGTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATGGCTATGCTGCCTTAGTGTTCCTCTTCTGAAAAATATCAGTTC  648

seq1  TCCCCTGCTCAATGTGTGTTGCCACCAATAATTTGACTCAGCCCAACAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGCTCAATGTGTGTTGCCACCAATAATTTGACTCAGCCCAACAAA  698

seq1  GTTTGCTTGCTGTCTTGTATGTCACATAAAGCAGCATGCTAAACTCTGCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTGCTGTCTTGTATGTCACATAAAGCAGCATGCTAAACTCTGCC  748

seq1  CGTGGGTCTCAGAGGTCCTCCCTGCCCTCTGGAAATTCCAGTTCAGCTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGTCTCAGAGGTCCTCCCTGCCCTCTGGAAATTCCAGTTCAGCTTC  798

seq1  TTTCTTCTATACCCCAGTTTACAGGAGACCTTAGGTGCTCTGCGGAGTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTATACCCCAGTTTACAGGAGACCTTAGGTGCTCTGCGGAGTCC  848

seq1  ATATGCTAGATTCTGAGCCATGCTGGGATTTTAATCCTTTCCCCAGCCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTAGATTCTGAGCCATGCTGGGATTTTAATCCTTTCCCCAGCCTG  898

seq1  TTCATTTTTAAGACAATGTACTGTTTTTTTCCATAGTATCGGTGTGTTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTAAGACAATGTACTGTTTTTTTCCATAGTATCGGTGTGTTTA  948

seq1  TGTATGTGTGTGCTGTTGATGTGTCTGTGGGTTCATATATGTACATGGCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTGTGCTGTTGATGTGTCTGTGGGTTCATATATGTACATGGCT  998

seq1  GTGAAGGCCAGAGGACAGTCTTGAGTGTCTGTCTTCATGTGTTGTCTATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGCCAGAGGACAGTCTTGAGTGTCTGTCTTCATGTGTTGTCTATT  1048

seq1  CTTTTCTTTGGGACAGAGCCTCTCTTGACCTGGAATTC  1084
      ||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTGGGACAGAGCCTCTCTTGACCTGGAATTC  1086


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