BAC Information

Click to search

BAC

Clone NameB6Ng01-283B08
Chromosome12 (Build37)
Map Location 62,516,215 - 62,622,906
singlet/doubletdoublet
Overlap geneNanog-ps2
Upstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677
Downstream geneLrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283B08.bB6Ng01-283B08.g
ACCGA082132GA082133
length1,1711,165
definitionB6Ng01-283B08.b B6Ng01-283B08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,516,215 - 62,517,391)(62,621,740 - 62,622,906)
sequence
gaattcctctgcatgtataccatacaattttaatgcattcaaattgtgat
gttgcagcatgatgcagaaaggacaaaataatggcaggttataaattata
attcatcatataagatgtggagagctgggcagcaaagtctaaaacatatg
actatttcctcataatgacaaaaatgctcttgacccataaaagaaggaat
ggctgaactgactgtacaatccagttcctaacctcatagtacttagtatg
aagttgattcatccatagactggcttcttgacatgggtggtaaagccttt
taagttttataccttttcatctctcttgagaaatccagtaatgaaaacag
tgtcttgatttaactatttagtaaggttctcagacacacttggatatttt
agcaacagtagaagttttgttaaattagtgagctgttaaaatacctctcc
tattgaacaattaacattttatgcattttcctttaaggctacatgaaatt
tacaaatattattaggcacaatacaagaccttaaaaagaaaatgattctc
ttaaaaatacagttttgtgatttgtaactaaacctgtgcatgtcttttcg
acaatgcactgaaatcgaaaatcagtccattttctgcatgagtatgctac
aaaaataagtagtagatatatcttagaatattaattaattccataaaata
tgctctttgaaaggcagtttggttgctaagtctaaagatttaaattaaag
tgcacatttatcacccactgaattaatcagagttatttacatccactctg
attaagacccacattcctaggattttcagtgtctattgtaaaacaattat
agcttctttctctgttactatttggcttgatcatgtgacttaaactatct
tttagaatgtgaacaaatacatcactttctaggtttgagcagaaggctca
ccatataattatatttcacatggcaactatatcttttccctctgaaatga
gaactgaatgctgtaaataaagatgtcaacttcacaaatagacagttact
ttcacctctgacatttaacatgacacttaagaacatacacagttatttat
ttacattatctccttaactagatcacaaagttaatagacttcatgtagtt
ccatgccatatttcggtttgg

gaattcacatgggcgtgcatattcaggcacacccacgggccctatccaag
tgcgcgcacaggcacccacgcgtaatcaagacccacacagctgccttttg
agagatgaactcagcctggagtactttaagtggtaactgctccagttttc
tcttcccttctctgggctcctctctttgcttccgaccaggttccactcct
gtttatccctgggtggttcgcccctggatttagcaatgcgatctacttgc
tggttatttgattccggaggagcattggctggggctgcgattcccgccgc
gcagtctccaagcatttccgccacatcgccggggctccaggttccagtgc
aagtcttcagcggtagattgcagaactgaaaacgagtttgagcatccaag
catctctcttaacagccaggtgctgaccagtaagattccatacaaatctg
caaaaggactctggaggacaaatacttcagcagacaccatgaagtcctgg
agagtctccacaaaaaccgtgagtgtttctcccgtgtatagtcaaggaag
tggataacccagtattccaagaaatcccaaggtagagccttcacctcaag
gaggaggccacgtctgaaggcacagaagagaaagtgctgctttctggctt
ccctttaaacttggaagctttgtggacttgagggcaagtgatgaaatcgc
cccagcttggactccaggaagatccaaatgagcacttccaagtaggatgt
ggagggtgacttcttttgccttcaggactgtcccacttgctgtcccgctt
agctgaaagaactaagtctcctaaataagtatttgtggttcaccaaagtg
aacaaagtatatatccaaatattgattcagaatccaaaagacctctgcct
ctctggattgaataactttccttctttttcctctttcctttacattttat
acccgggacaaaggtaagagagactcattgccactgggccagttgagatg
ctacagttggggacgagcaaattcagtttggggtgcttgtcttaaatgtg
tttaggtgggtggagaaagatgaccccaccttttggctgagtgggggagt
gaatgcaagggcattctcagtgttcctcaagtgcacaccttccaagcaga
aatggccattataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62516215_62517391
seq2: B6Ng01-283B08.b_45_1215

seq1  GAATTCCTCTGCATGTATACCATACAATTTTAATGCATTCAAATTGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGCATGTATACCATACAATTTTAATGCATTCAAATTGTGAT  50

seq1  GTTGCAGCATGATGCAGAAAGGACAAAATAATGGCAGGTTATAAATTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGCATGATGCAGAAAGGACAAAATAATGGCAGGTTATAAATTATA  100

seq1  ATTCATCATATAAGATGTGGAGAGCTGGGCAGCAAAGTCTAAAACATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCATATAAGATGTGGAGAGCTGGGCAGCAAAGTCTAAAACATATG  150

seq1  ACTATTTCCTCATAATGACAAAAATGCTCTTGACCCATAAAAGAAGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCCTCATAATGACAAAAATGCTCTTGACCCATAAAAGAAGGAAT  200

seq1  GGCTGAACTGACTGTACAATCCAGTTCCTAACCTCATAGTACTTAGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAACTGACTGTACAATCCAGTTCCTAACCTCATAGTACTTAGTATG  250

seq1  AAGTTGATTCATCCATAGACTGGCTTCTTGACATGGGTGGTAAAGCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATTCATCCATAGACTGGCTTCTTGACATGGGTGGTAAAGCCTTT  300

seq1  TAAGTTTTATACCTTTTCATCTCTCTTGAGAAATCCAGTAATGAAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTATACCTTTTCATCTCTCTTGAGAAATCCAGTAATGAAAACAG  350

seq1  TGTCTTGATTTAACTATTTAGTAAGGTTCTCAGACACACTTGGATATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGATTTAACTATTTAGTAAGGTTCTCAGACACACTTGGATATTTT  400

seq1  AGCAACAGTAGAAGTTTTGTTAAATTAGTGAGCTGTTAAAATACCTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGTAGAAGTTTTGTTAAATTAGTGAGCTGTTAAAATACCTCTCC  450

seq1  TATTGAACAATTAACATTTTATGCATTTTCCTTTAAGGCTACATGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAACAATTAACATTTTATGCATTTTCCTTTAAGGCTACATGAAATT  500

seq1  TACAAATATTATTAGGCACAATACAAGACCTTAAAAAGAAAATGATTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATATTATTAGGCACAATACAAGACCTTAAAAAGAAAATGATTCTC  550

seq1  TTAAAAATACAGTTTTGTGATTTGTAACTAAACCTGTGCATGTCTTTTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATACAGTTTTGTGATTTGTAACTAAACCTGTGCATGTCTTTTCG  600

seq1  ACAATGCACTGAAATCGAAAATCAGTCCATTTTCTGCATGAGTATGCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCACTGAAATCGAAAATCAGTCCATTTTCTGCATGAGTATGCTAC  650

seq1  AAAAATAAGTAGTAGATATATCTTAGAATATTAATTAATTCCATAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAGTAGTAGATATATCTTAGAATATTAATTAATTCCATAAAATA  700

seq1  TGCTCTTTGAAAGGCAGTTTGGTTGCTAAGTCTAAAGATTTAAATTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTGAAAGGCAGTTTGGTTGCTAAGTCTAAAGATTTAAATTAAAG  750

seq1  TGCACATTTATCACCCACTGAATTAATCAGAGTTATTTACATCCACTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTTATCACCCACTGAATTAATCAGAGTTATTTACATCCACTCTG  800

seq1  ATTAAGACCCACATTCCTAGGATTTTCAGTGTCTATTGTAAAACAATTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGACCCACATTCCTAGGATTTTCAGTGTCTATTGTAAAACAATTAT  850

seq1  AGCTTCTTTCTCTGTTACTATTTGGCTTGATCATGTGACTTAAACTATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTTCTCTGTTACTATTTGGCTTGATCATGTGACTTAAACTATCT  900

seq1  TTTAGAATGTGAACAAATACATCACTTTCTAGGTTTGAGCAGAAGGCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATGTGAACAAATACATCACTTTCTAGGTTTGAGCAGAAGGCTCA  950

seq1  CCATATAATTATATTTCACATGGCAACTATATCTTTTCCCTCTGAAATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAATTATATTTCACATGGCAACTATATCTTTTCCCTCTGAAATGA  1000

seq1  GAACTGAATGCTGTAAATAAAGATGTCAACTTCACAAATAGACAGTTACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAATGCTGTAAATAAAGATGTCAACTTCACAAATAGACAGTTACT  1050

seq1  TTCACTCCTGAACATTTAACATGACAACTTAAG-ACATACACAGTTTAAT  1099
      |||||  ||| |||||||||||||| ||||||| ||||||||||||  ||
seq2  TTCACCTCTG-ACATTTAACATGAC-ACTTAAGAACATACACAGTT--AT  1096

seq1  TTATTTAACATTATCTCCTTAAACTAGATCACAAAG-TAATAGATTTTCA  1148
      |||||| ||||||||||||| ||||||||||||||| |||||||  ||||
seq2  TTATTT-ACATTATCTCCTT-AACTAGATCACAAAGTTAATAGA-CTTCA  1143

seq1  TGTAGGGTTTTCATG-CATATTTC-GTTTGG  1177
      |||||   || |||| |||||||| ||||||
seq2  TGTAG---TTCCATGCCATATTTCGGTTTGG  1171


seq1: chr12_62621740_62622906
seq2: B6Ng01-283B08.g_62_1226 (reverse)

seq1  GTTA-AATGG-CATTTCTGCCTGGGAAGTGTTGCACCTTGAGAGAACACT  48
      |||| ||||| ||||||||| ||| | ||| |||| |||||| |||||||
seq2  GTTATAATGGCCATTTCTGCTTGGAAGGTG-TGCA-CTTGAG-GAACACT  47

seq1  GAG-ATGCCC-TGCA-TCACTCCCCAACTTCAGCCAAAAGGTGGTGTCAT  95
      ||| |||||| |||| ||||||||| || ||||||||||||||| |||||
seq2  GAGAATGCCCTTGCATTCACTCCCCCAC-TCAGCCAAAAGGTGGGGTCAT  96

seq1  CTTTCT-CACC--ACTAAACACATTTAAGACAAGGCACCCC-AACTGAAT  141
      |||||| ||||   ||||||||||||||||||| ||||||| ||||||||
seq2  CTTTCTCCACCCACCTAAACACATTTAAGACAA-GCACCCCAAACTGAAT  145

seq1  TTTGCCTCGTCCCCAACTGTTAGCATCTTCAACTGGCCCAGTTGGCAATG  191
      ||   |||||||||||||| ||||||| ||||||||||||| ||||||||
seq2  TT--GCTCGTCCCCAACTG-TAGCATC-TCAACTGGCCCAG-TGGCAATG  190

seq1  AGTCTTCTTCTTACCTTTGT-CCGGGTATAAAATGTAAAGGAAAGAGGAA  240
      |||||   |||||||||||| |||||||||||||||||||||||||||||
seq2  AGTCT--CTCTTACCTTTGTCCCGGGTATAAAATGTAAAGGAAAGAGGAA  238

seq1  AAAGAAGGAAAGTTATTCAATCCAGAGAGGCAGAGGTCTTTTGGATTCTG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGAAAGTTATTCAATCCAGAGAGGCAGAGGTCTTTTGGATTCTG  288

seq1  AATCAATATTTGGATATATACTTTGTTCACTTTGGTGAACCACAAATACT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATATTTGGATATATACTTTGTTCACTTTGGTGAACCACAAATACT  338

seq1  TATTTAGGAGACTTAGTTCTTTCAGCTAAGCGGGACAGCAAGTGGGACAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGGAGACTTAGTTCTTTCAGCTAAGCGGGACAGCAAGTGGGACAG  388

seq1  TCCTGAAGGCAAAAGAAGTCACCCTCCACATCCTACTTGGAAGTGCTCAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGGCAAAAGAAGTCACCCTCCACATCCTACTTGGAAGTGCTCAT  438

seq1  TTGGATCTTCCTGGAGTCCAAGCTGGGGCGATTTCATCACTTGCCCTCAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCTTCCTGGAGTCCAAGCTGGGGCGATTTCATCACTTGCCCTCAA  488

seq1  GTCCACAAAGCTTCCAAGTTTAAAGGGAAGCCAGAAAGCAGCACTTTCTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAAAGCTTCCAAGTTTAAAGGGAAGCCAGAAAGCAGCACTTTCTC  538

seq1  TTCTGTGCCTTCAGACGTGGCCTCCTCCTTGAGGTGAAGGCTCTACCTTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCCTTCAGACGTGGCCTCCTCCTTGAGGTGAAGGCTCTACCTTG  588

seq1  GGATTTCTTGGAATACTGGGTTATCCACTTCCTTGACTATACACGGGAGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTTGGAATACTGGGTTATCCACTTCCTTGACTATACACGGGAGA  638

seq1  AACACTCACGGTTTTTGTGGAGACTCTCCAGGACTTCATGGTGTCTGCTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCACGGTTTTTGTGGAGACTCTCCAGGACTTCATGGTGTCTGCTG  688

seq1  AAGTATTTGTCCTCCAGAGTCCTTTTGCAGATTTGTATGGAATCTTACTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTGTCCTCCAGAGTCCTTTTGCAGATTTGTATGGAATCTTACTG  738

seq1  GTCAGCACCTGGCTGTTAAGAGAGATGCTTGGATGCTCAAACTCGTTTTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCACCTGGCTGTTAAGAGAGATGCTTGGATGCTCAAACTCGTTTTC  788

seq1  AGTTCTGCAATCTACCGCTGAAGACTTGCACTGGAACCTGGAGCCCCGGC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCAATCTACCGCTGAAGACTTGCACTGGAACCTGGAGCCCCGGC  838

seq1  GATGTGGCGGAAATGCTTGGAGACTGCGCGGCGGGAATCGCAGCCCCAGC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGCGGAAATGCTTGGAGACTGCGCGGCGGGAATCGCAGCCCCAGC  888

seq1  CAATGCTCCTCCGGAATCAAATAACCAGCAAGTAGATCGCATTGCTAAAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCCTCCGGAATCAAATAACCAGCAAGTAGATCGCATTGCTAAAT  938

seq1  CCAGGGGCGAACCACCCAGGGATAAACAGGAGTGGAACCTGGTCGGAAGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGCGAACCACCCAGGGATAAACAGGAGTGGAACCTGGTCGGAAGC  988

seq1  AAAGAGAGGAGCCCAGAGAAGGGAAGAGAAAACTGGAGCAGTTACCACTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGGAGCCCAGAGAAGGGAAGAGAAAACTGGAGCAGTTACCACTT  1038

seq1  AAAGTACTCCAGGCTGAGTTCATCTCTCAAAAGGCAGCTGTGTGGGTCTT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTCCAGGCTGAGTTCATCTCTCAAAAGGCAGCTGTGTGGGTCTT  1088

seq1  GATTACGCGTGGGTGCCTGTGCGCGCACTTGGATAGGGCCCGTGGGTGTG  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACGCGTGGGTGCCTGTGCGCGCACTTGGATAGGGCCCGTGGGTGTG  1138

seq1  CCTGAATATGCACGCCCATGTGAATTC  1167
      |||||||||||||||||||||||||||
seq2  CCTGAATATGCACGCCCATGTGAATTC  1165


| Home | SequenceCutter | Blast | Download |