BAC Information

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BAC

Clone NameB6Ng01-283D16
Chromosome12 (Build37)
Map Location 38,967,136 - 38,967,350
singlet/doubletsinglet
Overlap geneDgkb
Upstream geneA530016O06Rik, LOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283D16.bB6Ng01-283D16.g
ACCGA082243GA082244
length1,0721,207
definitionB6Ng01-283D16.b B6Ng01-283D16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttatctctgttctccattttaaataggattatttgtttc
tctgaagtccaacttcttaagttttttgtatatattttatattagccctc
tatcagatgtaagattggtaaagatcttttcccaatgtgttggttgctgt
tttgtcctattgacagtgtcctttgccttacagaagctttgcaattttat
gaggtctcatttgtcaattcttgatcttagagcatatgccattggtattc
tgctcaggaatttttccctgtgcccatgtgttcaaggctctcccctactt
tctcttctattagtttcagtgtatctggttcttgttccacttggacttga
gttttgtacaaggagataagaatgaatcgatttgcattcttctacattct
gccctcctgttaaaccagatccatttgttgaaaatgctgtcttttttcca
ctggatggtttaactcctttgtcaaagatcaagtgaccatatgtgtgtgg
gttcatttctgtgtcttcaattccattcctttgatctacctgcctatctc
tgcaccaattgcaccaataccatgattttttgtttgtttgtttgtttgtt
tgtttttatcaccattgctctgtaataccgcttgaggtcagggatgatga
ttctctcagaagtacttttattgttggggatagttttagaagccacttaa
aaaatatcttcccataagatgttcctggttttagttgttccagagatact
gcatgctctgtaggtacatcctctctgttgcctcatcttcctgagaagca
tctgtgggtcctttaggctcaatttaaggagccaaagctcttcctgagca
agccaccaccatcttgtatctcctgatctcatctcactatatttttttta
cctgtttttggtcaggtcttcagtaatacttactaaagtcttgatagagt
catcccttaaggtatattgcaattatcactactgaagatatattatttat
tatcttattcatttctactcatacacacacacacgcacacacacacaaca
cacacacacacacacacacact

gaattctttgttcagttctgagcctccttttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
tatctagaattaagtctcttttcaaaagagagtcaagaatacatgcacgt
gctaagtactgagagatcccctcataatttccccaaatcgcaaccatgtg
tgaatatattttgagaaagtagggttgcagcccccattgagtcttccctt
gttattgtgtagccagaatgccgcaaaacttccatgcctaagcaaactgt
tgagagtacgtttcgatttctgactgtgttagcctggaagtgcttgtccc
aaccttgtttctgaccatgaacgccccccagccaacctgttagttgaagc
atcttggcaattagcaacatgatatcacaacgctctgagctgctcgttcg
gctatggcgtgcgcctagtccgaaggtccgactttgatagtctcggaagg
ttgcttgtgtctgcattcgcttcaagaagatattaacatcatgtctgggt
gttcgaatttcaacaggtaagttagttgctagaacacatggctcctctgc
cgacgctgagtagattttaggtgactcggtggtgactctgagtctgtgtg
gactcgatgatttttatcagactacatagccagatttacaggatacactt
acgagagagattgtattgcttttactcagcctcctattccctaacgtcta
tgagtgactcttgacgtataatgatgggtagatgacatgctatacagatt
gttccgcatcctacgtctgcatattgcactttttcctcttcaaatcgact
tacacctagtcaccaacacagtcttcaaccactgatgtagtacccttgca
tgtttcatcgccagtaacatctgacagtgaacagatgtagtgcttaatac
gctaggactgcctcactgcagtagccctccgaatcgatcatgcagcattc
cattgaacatcgcatactgttatagctgagaactcgcatactacattgag
tcacacgtacgtaactggtggagactaacgaaagccctcgacatatacat
gtcagtcatcggcaaccgaatctcgaacagccgtcaccacaggttaacat
tgaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_38967136_38967350
seq2: B6Ng01-283D16.b_759_1116

seq1  TAAGATGTTCCTGGT-----TGATTCCAG---TA--------TCTG----  30
      |||||||||||||||     |  ||||||   ||        ||||    
seq2  TAAGATGTTCCTGGTTTTAGTTGTTCCAGAGATACTGCATGCTCTGTAGG  50

seq1  ---AT--TCTCTGCT--ATCATGTTTTTAAGAACCAT---TG--------  62
         ||  |||||| |   |||| ||  | |||| |||   ||        
seq2  TACATCCTCTCTGTTGCCTCATCTTCCTGAGAAGCATCTGTGGGTCCTTT  100

seq1  -------ATTTCA-----------TCTTC-------AGCC----------  77
             |||| |           |||||       ||||          
seq2  AGGCTCAATTTAAGGAGCCAAAGCTCTTCCTGAGCAAGCCACCACCATCT  150

seq1  ------------TCCCATTTCTCT-------------CTG-----GGTCA  97
                  || ||| || ||             |||     |||||
seq2  TGTATCTCCTGATCTCATCTCACTATATTTTTTTTACCTGTTTTTGGTCA  200

seq1  ----ATCTGAAAAA--GATCAAAATC----CAGAATTA-CCCAGAA----  132
           || | || |   |  ||| ||     ||| | | |||  ||    
seq2  GGTCTTCAGTAATACTTACTAAAGTCTTGATAGAGTCATCCCTTAAGGTA  250

seq1  ------CCTTATCAGAATTCAA------------AGTAGC-----AACTT  159
              ||||||  | | ||            | || |      | ||
seq2  TATTGCAATTATCACTACTGAAGATATATTATTTATTATCTTATTCATTT  300

seq1  CTAATTAGA-TTAGACACACACACACACACAC-ACACACACACACACACA  207
      ||| | | |   | |||||| ||||||||||| |||||||||||||||||
seq2  CTACTCATACACACACACACGCACACACACACAACACACACACACACACA  350

seq1  CACACACT  215
      ||||||||
seq2  CACACACT  358


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