BAC Information

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BAC

Clone NameB6Ng01-284M23
Chromosome1 (Build37)12 (Build37)
Map Location 19,904,178 - 19,904,5156,570,855 - 6,571,468
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284M23.bB6Ng01-284M23.g
ACCGA083421GA083422
length553614
definitionB6Ng01-284M23.b B6Ng01-284M23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,904,178 - 19,904,515)(6,570,855 - 6,571,468)
sequence
tacctctgaaggagaagacccatgctttctagattggtgcgacccaccac
agtgttgagcccacaccataacttgtgttcaatattaggaatttatgtgt
ggacatattttagcaggctaagtgttgttacctttctagaaactgtatgt
caaaatccttgaattctatgatcattataggatcttgcagcagaaggcag
agtgataaaagcaggtaaaggaccctgatatagctgtctcttgtgagact
atgcaggggcctagcaaacacagaagtggatgatcacagtcagctattgg
atggatcacagggtccccaatggaggagctagagaaagtacccaatgagc
taaagggatctgcaaccctataggtggaacaacattatgaactaaccagt
acctcggagctcttgactcggagctgcatatgtaacaaaagatggcctag
tcggccatcactggaaagagaggcccattggacttgcaaactttatatgc
cccagtacaggggaacgccagggccaaaaagggggagtgggtgggtaggg
gag

gaattccagggtaggtgacctctaagttaatctgttgtcaatatctacag
acattccattaccattgcatgggttctggaaacttgctggggagatctgg
gaactgttacagaggcagtagctgaggaagtctggaaattgctgctaacc
cattgtacttgcttaagaccaggtggctgggacattctattatctgggca
tgaaggcagaagcctgggtttttgtttgtttgtttgtttgttttgttttg
ttttgtttgtttgtttgttttgttttgtttttctattagtaattgatttg
cctggccttgcttgaacttgcccagtttttagacctagtctcaactccca
atttgaagtctgtcatgaaatcagcttagccttctcaatattagagggag
aatgaaactttctttatgcatagttcctaagcagatggtcagcatttaaa
agtatcaactgtcaaaaccaaactcctgcaattccatcctcacagaatac
cccaggctcagttggtgtcagcttgcattctgtatcaccggttatgcaaa
taatgctgtattactcttcaacaagacgggaatcagatagtcgggtagta
attttgaggaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_19904178_19904515
seq2: B6Ng01-284M23.b_268_604

seq1  AAAGGACCCTGATATAGCTGTCTCTTTTGAGACTATGCCAGGGCCTAGCA  50
      |||||||||||||||||||||||||| |||||||||||  ||||||||||
seq2  AAAGGACCCTGATATAGCTGTCTCTTGTGAGACTATGCAGGGGCCTAGCA  50

seq1  AACACAGAAGTGAATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCC  100
      |||||||||||| ||| |||||||||||||||||||||||||||||| ||
seq2  AACACAGAAGTGGATGATCACAGTCAGCTATTGGATGGATCACAGGGTCC  100

seq1  CCAATGGAGGAGCTAGAGAAAATACCCAAGGATTTAAGGGGGTCTGCAAC  150
      ||||||||||||||||||||| ||||||| ||  ||| ||| ||||||||
seq2  CCAATGGAGGAGCTAGAGAAAGTACCCAATGAGCTAAAGGGATCTGCAAC  150

seq1  CCTATAGGTGGAACAACAATATGAACTAACTAGTACCCCCCAGAGCTCGT  200
      |||||||||||||||||| ||||||||||| ||||  || | |||||| |
seq2  CCTATAGGTGGAACAACATTATGAACTAACCAGTA--CCTCGGAGCTCTT  198

seq1  GTCTC-TAGCTGCATATGTATCAAAAGATGGCCTAGTTGGCCATCAGTGG  249
      | |||  ||||||||||||| |||||||||||||||| |||||||| |||
seq2  GACTCGGAGCTGCATATGTAACAAAAGATGGCCTAGTCGGCCATCACTGG  248

seq1  AAAGAGAGGGCCATTGGTCGTGCAAACTTTATATGTCTCAGTACAGGGGA  299
      ||||||||| ||||||| | ||||||||||||||| | ||||||||||||
seq2  AAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGA  298

seq1  AGGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTGGGGGAG  338
      | ||||||||||| ||| |||||||||||||| ||||||
seq2  ACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAG  337


seq1: chr12_6570855_6571468
seq2: B6Ng01-284M23.g_65_678

seq1  GAATTCCAGGGTAGGTGACCTCTAAGTTAATCTGTTGTCAATATCTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTAGGTGACCTCTAAGTTAATCTGTTGTCAATATCTACAG  50

seq1  ACATTCCATTACCATTGCATGGGTTCTGGAAACTTGCTGGGGAGATCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCATTACCATTGCATGGGTTCTGGAAACTTGCTGGGGAGATCTGG  100

seq1  GAACTGTTACAGAGGCAGTAGCTGAGGAAGTCTGGAAATTGCTGCTAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTTACAGAGGCAGTAGCTGAGGAAGTCTGGAAATTGCTGCTAACC  150

seq1  CATTGTACTTGCTTAAGACCAGGTGGCTGGGACATTCTATTATCTGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTACTTGCTTAAGACCAGGTGGCTGGGACATTCTATTATCTGGGCA  200

seq1  TGAAGGCAGAAGCCTGGGTTTTTGTTTGTTTGTTTGTTTGTTTTGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAGAAGCCTGGGTTTTTGTTTGTTTGTTTGTTTGTTTTGTTTTG  250

seq1  TTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTTCTATTAGTAATTGATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTTCTATTAGTAATTGATTTG  300

seq1  CCTGGCCTTGCTTGAACTTGCCCAGTTTTTAGACCTAGTCTCAACTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTTGCTTGAACTTGCCCAGTTTTTAGACCTAGTCTCAACTCCCA  350

seq1  ATTTGAAGTCTGTCATGAAATCAGCTTAGCCTTCTCAATATTAGAGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGTCTGTCATGAAATCAGCTTAGCCTTCTCAATATTAGAGGGAG  400

seq1  AATGAAACTTTCTTTATGCATAGTTCCTAAGCAGATGGTCAGCATTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACTTTCTTTATGCATAGTTCCTAAGCAGATGGTCAGCATTTAAA  450

seq1  AGTATCAACTGTCAAAACCAAACTCCTGCAATTCCATCCTCACAGAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAACTGTCAAAACCAAACTCCTGCAATTCCATCCTCACAGAATAC  500

seq1  CCCAGGCTCAGTTGGTGTCAGCTTGCATTCTGTATCACCGGTTATGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTCAGTTGGTGTCAGCTTGCATTCTGTATCACCGGTTATGCAAA  550

seq1  TAATGCTGTATTACTCTTCAACAAGACGGGAATCAGATAGTCGGGTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTGTATTACTCTTCAACAAGACGGGAATCAGATAGTCGGGTAGTA  600

seq1  ATTTTGAGGAATGG  614
      ||||||||||||||
seq2  ATTTTGAGGAATGG  614


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