BAC Information

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BAC

Clone NameB6Ng01-288O13
Chromosome12 (Build37)
Map Location 94,038,139 - 94,195,268
singlet/doubletdoublet
Overlap genenone
Upstream geneSel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream gene2610022K04Rik-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288O13.bB6Ng01-288O13.g
ACCGA086452GA086453
length1,0971,184
definitionB6Ng01-288O13.b B6Ng01-288O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,038,139 - 94,039,229)(94,194,076 - 94,195,268)
sequence
gaattcctccattatatatatatataatgtcatatcttatatataatata
gaattattatatatattttccctttccctgtaaatatataaaggcatgat
gacttctcacttagttctttatcttcagtgtataaaaatctggcttgaat
cagagctctagtgattcactaaatgatttgtgaaaagttagattttaagt
tggaagtgaaattgttgtctcatcttctaatttttttcattgaaaactaa
attttccatatataattttggaaacatgtttgatttggagataaatttgg
gaaaggcaagaagatggtcattgtagtaagaacagagagaagtattagga
aaaaaaaagagacttagaaaactccctttttctgataggtttcaagtagt
caaggaaatcattgaacccatttttagttgactttaatggtcaatttgaa
acagcctagtgtcccctgaggcatcaattgaaggattttcctggtatgag
tgtcctgtgggaatcttgttgtgcatggttgtaataattaattgatttag
atagtatcagagcactatagacaataccattccctatgcagatagtctag
ggatgtacaggcaagttaagcaaacagagttccttctttgttcctgtttc
aagatcctgtttggattcctatcctaacttctgatggcagaatgtaacct
ctaagattaaaaaaaagtcccgtttctcccaaagtttactttggtgagaa
taacaggaatggaccagaaactacaacatataattggggatgatattgaa
atctgaacccaatggtctcttacctccctagagctggttttgcattcatg
agccaccacagccagttttatagaaaatcaaggatccaaccaaaggcttc
atgtatgctaagaaagttctatactaagttagctacatccacagcttcaa
tacctcataactgtgaaattcattaataattaatttgtaaatataaattc
cagatttggggatagcttagctaaagttattttttcttgggagaaatgga
gtttcatacaacacaattattgaagaataacattatattccttgaga
gaattcacacaaacagaaatgatgaaatgccatgataaaattggtgcctc
tcagataccatgcttaacaaatctcttttctgaacagagatagggagatt
cattttccaaatgactttgcagacctcactacatatttcatgagagaaaa
aaaaaaaacaagaaacaaacaaacaaaacccccaaactcatgaagtcatg
cagttgccaatgaaacaaaatgtcatctcatgattgaagcaagaagctta
gattacttgataattttaatatgcactgatttaattagaattggagatag
agaggaaatgctgaatctcagaacagtcactccaatttattgcctctacc
acctaagcaacttttcactgataaaggacacttgaataccagtagttata
gcctttctacccctgcttttagttatttattattatcataatgacattta
aaaatatagactagaaagatgaggaatcttaattttttattaattatgct
ttttttttcatgaaatggtggtgtatgttagaactttgtcaagctaacaa
tgaggtctgtccacttatatgagctgatcaacagagtaatacctacatat
agtattaaaactctaaagatttaaaagctgttaaatgattatctcctgga
accccaacagagctaaaagagcttgtttgtgtctgtcttgctctctgaca
aaattttagtcctaatgttgttcattgaatctccatgaaagaatgagagc
agttgactagatgacttctgtgtttcaagcattctggtaaactaaataaa
attccagacaataaaattttcagagaagaaagaaaagtcatcttatacct
acatggagagtagagtatgtgacaagggacaagtgtgagcttgttactta
catgcatattaagtgactgggaaacaatgatcttaacttgaatcttatgc
actaaaattcacaagcttaattctgtaccaacttaggtaacacttatcta
cacatctatattattttattttttaaataaaactcctactctatgatttt
tttgttataaaaacattaagaatatgaaatagtcaaaatagcaaggagtt
agtgctgatgtcaatagcccaatccacggtagatcccttggatactgttt
catatgccgtgtgtgtgcacctcctccagtgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_94038139_94039229
seq2: B6Ng01-288O13.b_47_1143

seq1  GAATTCCTCCATTATATATATATATAATGTCATATCTTATATATAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCATTATATATATATATAATGTCATATCTTATATATAATATA  50

seq1  GAATTATTATATATATTTTCCCTTTCCCTGTAAATATATAAAGGCATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTATATATATTTTCCCTTTCCCTGTAAATATATAAAGGCATGAT  100

seq1  GACTTCTCACTTAGTTCTTTATCTTCAGTGTATAAAAATCTGGCTTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTCACTTAGTTCTTTATCTTCAGTGTATAAAAATCTGGCTTGAAT  150

seq1  CAGAGCTCTAGTGATTCACTAAATGATTTGTGAAAAGTTAGATTTTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCTAGTGATTCACTAAATGATTTGTGAAAAGTTAGATTTTAAGT  200

seq1  TGGAAGTGAAATTGTTGTCTCATCTTCTAATTTTTTTCATTGAAAACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGAAATTGTTGTCTCATCTTCTAATTTTTTTCATTGAAAACTAA  250

seq1  ATTTTCCATATATAATTTTGGAAACATGTTTGATTTGGAGATAAATTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCATATATAATTTTGGAAACATGTTTGATTTGGAGATAAATTTGG  300

seq1  GAAAGGCAAGAAGATGGTCATTGTAGTAAGAACAGAGAGAAGTATTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCAAGAAGATGGTCATTGTAGTAAGAACAGAGAGAAGTATTAGGA  350

seq1  AAAAAAAAGAGACTTAGAAAACTCCCTTTTTCTGATAGGTTTCAAGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAGACTTAGAAAACTCCCTTTTTCTGATAGGTTTCAAGTAGT  400

seq1  CAAGGAAATCATTGAACCCATTTTTAGTTGACTTTAATGGTCAATTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAATCATTGAACCCATTTTTAGTTGACTTTAATGGTCAATTTGAA  450

seq1  ACAGCCTAGTGTCCCCTGAGGCATCAATTGAAGGATTTTCCTGGTATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTAGTGTCCCCTGAGGCATCAATTGAAGGATTTTCCTGGTATGAG  500

seq1  TGTCCTGTGGGAATCTTGTTGTGCATGGTTGTAATAATTAATTGATTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTGGGAATCTTGTTGTGCATGGTTGTAATAATTAATTGATTTAG  550

seq1  ATAGTATCAGAGCACTATAGACAATACCATTCCCTATGCAGATAGTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATCAGAGCACTATAGACAATACCATTCCCTATGCAGATAGTCTAG  600

seq1  GGATGTACAGGCAAGTTAAGCAAACAGAGTTCCTTCTTTGTTCCTGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTACAGGCAAGTTAAGCAAACAGAGTTCCTTCTTTGTTCCTGTTTC  650

seq1  AAGATCCTGTTTGGATTCCTATCCTAACTTCTGATGGCAGAATGTAACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCTGTTTGGATTCCTATCCTAACTTCTGATGGCAGAATGTAACCT  700

seq1  CTAAGATTAAAAAAAAGTCCCGTTTCTCCCAAAGTTTACTTTGGTGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTAAAAAAAAGTCCCGTTTCTCCCAAAGTTTACTTTGGTGAGAA  750

seq1  TAACAGGAATGGACCAGAAACTACAACATATAATTGGGGATGATATTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGAATGGACCAGAAACTACAACATATAATTGGGGATGATATTGAA  800

seq1  ATCTGAACCCAATGGTCTCTTACCTCCCTAGAGCTGGTTTTGCATTCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACCCAATGGTCTCTTACCTCCCTAGAGCTGGTTTTGCATTCATG  850

seq1  AGCCACCACAGCCAGTTTTATAGAAAATCAAGGATCCAACCAAAGGCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCACAGCCAGTTTTATAGAAAATCAAGGATCCAACCAAAGGCTTC  900

seq1  ATGTATGCTAAGAAAGTTCTATACTAAGTTAGCTACATCCACAGCTTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCTAAGAAAGTTCTATACTAAGTTAGCTACATCCACAGCTTCAA  950

seq1  TACCTCATAACTGTGAAATTCATTAATAATTAATTTGTAAATATAAATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCATAACTGTGAAATTCATTAATAATTAATTTGTAAATATAAATTC  1000

seq1  CAGATTTGGGGATTAGCTTAGCTAAAGTTA--TTTTCTTGGGAGGAATGG  1048
      |||||||||||| |||||||||||||||||  |||||||||||| |||||
seq2  CAGATTTGGGGA-TAGCTTAGCTAAAGTTATTTTTTCTTGGGAGAAATGG  1049

seq1  AGTATCATACAACACAA-TAATGA--GATAACA-TATA-TCCTTGAGA  1091
      ||| ||||||||||||| || |||   |||||| |||| |||||||||
seq2  AGTTTCATACAACACAATTATTGAAGAATAACATTATATTCCTTGAGA  1097

seq1: chr12_94194076_94195268
seq2: B6Ng01-288O13.g_70_1253 (reverse)

seq1  CATCACAGGA----GTGCACACA---GGCAATAGAAACAAGTAATTCAAG  43
      |||||| |||    |||||||||   ||||   ||||| ||||  || | 
seq2  CATCACTGGAGGAGGTGCACACACACGGCATATGAAAC-AGTA--TCCA-  46

seq1  AGGAATCTAACGTTGGGATTGTGCTAATGACATTCAGCACT-ACTCCCTG  92
      ||| ||||| |||  |||||| |||| ||||| |||||||| ||||| ||
seq2  AGGGATCTACCGT--GGATTGGGCTATTGACA-TCAGCACTAACTCCTTG  93

seq1  CTATTTTGACTATTTTCAATATTCTTTAAATGTTTTATTAACAAAAAAAT  142
      |||||||||||||||   ||||||||  ||||||||  ||||||||||||
seq2  CTATTTTGACTATTT--CATATTCTT--AATGTTTTTATAACAAAAAAAT  139

seq1  CATAAGAGGTAGGAGTTTTATTT-AAAAATAAAATAATTATAAGATGTGG  191
      ||| ||| ||||||||||||||| ||||||||||||| ||| |||||| |
seq2  CAT-AGA-GTAGGAGTTTTATTTAAAAAATAAAATAA-TAT-AGATGT-G  184

seq1  TAGATAAGTGTTTACCTAAGTTTGGTACAGAATTAAGCTTGTGAATTTTA  241
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  TAGATAAGTG-TTACCTAAG-TTGGTACAGAATTAAGCTTGTGAATTTTA  232

seq1  GTGCATAAGATTCAAGTTAAGATCATTGTTTTCCCAGTCACTTAATATGC  291
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTGCATAAGATTCAAGTTAAGATCATTG-TTTCCCAGTCACTTAATATGC  281

seq1  ATGTAAGTAACAAGCTCACACTTGT-CCTTGTCACATACTCTACTCTCCA  340
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGTAAGTAACAAGCTCACACTTGTCCCTTGTCACATACTCTACTCTCCA  331

seq1  TGTAGGTATAAGATGACTTTTCTTTCTTCTCTGAAAATTTTATTGTCTGG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTATAAGATGACTTTTCTTTCTTCTCTGAAAATTTTATTGTCTGG  381

seq1  AATTTTATTTAGTTTACCAGAATGCTTGAAACACAGAAGTCATCTAGTCA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATTTAGTTTACCAGAATGCTTGAAACACAGAAGTCATCTAGTCA  431

seq1  ACTGCTCTCATTCTTTCATGGAGATTCAATGAACAACATTAGGACTAAAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTCATTCTTTCATGGAGATTCAATGAACAACATTAGGACTAAAA  481

seq1  TTTTGTCAGAGAGCAAGACAGACACAAACAAGCTCTTTTAGCTCTGTTGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCAGAGAGCAAGACAGACACAAACAAGCTCTTTTAGCTCTGTTGG  531

seq1  GGTTCCAGGAGATAATCATTTAACAGCTTTTAAATCTTTAGAGTTTTAAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAGGAGATAATCATTTAACAGCTTTTAAATCTTTAGAGTTTTAAT  581

seq1  ACTATATGTAGGTATTACTCTGTTGATCAGCTCATATAAGTGGACAGACC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATGTAGGTATTACTCTGTTGATCAGCTCATATAAGTGGACAGACC  631

seq1  TCATTGTTAGCTTGACAAAGTTCTAACATACACCACCATTTCATGAAAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTAGCTTGACAAAGTTCTAACATACACCACCATTTCATGAAAAA  681

seq1  AAAAGCATAATTAATAAAAAATTAAGATTCCTCATCTTTCTAGTCTATAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATAATTAATAAAAAATTAAGATTCCTCATCTTTCTAGTCTATAT  731

seq1  TTTTAAATGTCATTATGATAATAATAAATAACTAAAAGCAGGGGTAGAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGTCATTATGATAATAATAAATAACTAAAAGCAGGGGTAGAAA  781

seq1  GGCTATAACTACTGGTATTCAAGTGTCCTTTATCAGTGAAAAGTTGCTTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAACTACTGGTATTCAAGTGTCCTTTATCAGTGAAAAGTTGCTTA  831

seq1  GGTGGTAGAGGCAATAAATTGGAGTGACTGTTCTGAGATTCAGCATTTCC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAGAGGCAATAAATTGGAGTGACTGTTCTGAGATTCAGCATTTCC  881

seq1  TCTCTATCTCCAATTCTAATTAAATCAGTGCATATTAAAATTATCAAGTA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATCTCCAATTCTAATTAAATCAGTGCATATTAAAATTATCAAGTA  931

seq1  ATCTAAGCTTCTTGCTTCAATCATGAGATGACATTTTGTTTCATTGGCAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGCTTCTTGCTTCAATCATGAGATGACATTTTGTTTCATTGGCAA  981

seq1  CTGCATGACTTCATGAGTTTGGGGGTTTTGTTTGTTTGTTTCTTGTTTTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGACTTCATGAGTTTGGGGGTTTTGTTTGTTTGTTTCTTGTTTTT  1031

seq1  TTTTTTTCTCTCATGAAATATGTAGTGAGGTCTGCAAAGTCATTTGGAAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCTCATGAAATATGTAGTGAGGTCTGCAAAGTCATTTGGAAA  1081

seq1  ATGAATCTCCCTATCTCTGTTCAGAAAAGAGATTTGTTAAGCATGGTATC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCTCCCTATCTCTGTTCAGAAAAGAGATTTGTTAAGCATGGTATC  1131

seq1  TGAGAGGCACCAATTTTATCATGGCATTTCATCATTTCTGTTTGTGTGAA  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGCACCAATTTTATCATGGCATTTCATCATTTCTGTTTGTGTGAA  1181

seq1  TTC  1193
      |||
seq2  TTC  1184