BAC Information

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BAC

Clone NameB6Ng01-289K17
Chromosome12 (Build37)
Map Location 12,967,285 - 13,123,266
singlet/doubletdoublet
Overlap geneEG668473
Upstream geneLOC100043209, D12Ertd553e, LOC100043215, Mycn
Downstream geneLOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289K17.bB6Ng01-289K17.g
ACCGA087004GA087005
length1,049880
definitionB6Ng01-289K17.b B6Ng01-289K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,967,285 - 12,968,342)(13,122,390 - 13,123,266)
sequence
gaattctgtctcaggaggttggactaagtttaaatttattcccactggta
ggttttgttttttgagttagttagttagttagttagtttttgtttttgtt
tttgttcaattgctgaaaacactttcagtggcctttgggagtttatcctt
gagttgataaattctttttttttttttttaattcactttgcagtcggatt
ataaaactgtttcgtttcagaaggagggtttggctttttaaaggccatca
atcaattgtttggccctaattaattttgcctgagagcatctgacatgttc
acagaagtagcaattaacgtggaatggaggtgcaatcaccatctcaaata
tttaaacaatgtgattatataatatctatcaacagaattcttaaaaaaaa
aaacccacttagagatgtagatgcatagggggttaaagtcttgcttcagg
ggctggaaaatggagcttcagttttttaacctccctgatcttcagtctat
aagacaagatgttgccagcccctggtgccgacttccggttggccacacac
acttgggcccttggagcttaaacatgccttcagtagtctgcatagatcgt
atcagacaaaagattcactgtactttccctcagagtcagtctgtgggggg
tctacccagtcatcttccaagctcctggcaaaatgttcgcacaccctgtc
tcgcattttgcccagggtctgggatagcgctgagccccgggactgacttc
tccggcccctactttgtgccaggcgagaccttctaagtcttcagagcctt
acgttattttctctaaatgtataccatctatgagatactgctgcttcata
gaaatcttagagacactgctatcccttgcgtccctattctggtttgtttc
ttgagggggaggaagagtttgcttggcttacaaaggttacatttcatcag
gtagggagctagggcaggactaaggcagagaccggcgggagacgctgctt
ctgggctgctctcatggctgctcagactcgtaaataaactgaccacctg
gaattcctaactcctttcctggtaggtgagaagagagagcagctctgaag
tcactggcaacacactgaggaactaaaacacagtagctgggagaggggac
aggagcaaaagccaaccattaactgcagagcacactgtggaggcagccag
cctacctggcgccatagtcactgaacttcatggactttgttaaagaagtc
aggaaggtgtctaatccatcttctattgcaaggcaaggagttaaaaatag
aagagctggtctcttcagatggagagtgaaagagatttaaaaaaaataag
actaatccgtgtttgtgaaacagttagctcacctcgatcagcagagggca
ggaagcagctgtaaggaagagatcctcaaccctcaggagaggggcagggg
gaggggattatggtattaaagtttctgttgccttcttctcaaaagaccta
gaacagctttaaaacaaacaacaacaagaaaaagacaatctgtcttgaag
aagatttttaaaaaaaaaaaaaaaaagaataatagacctgcactgtttgg
tttataacttttgaagtgtaatagtaaacaaatgagtgtcatttctgaag
tctaaggatgtcatcagacccctttctaaatctccattttattaatccac
acaagatggacaatgcaatcaccttcatcaaaggctccagtgagtgttac
acgagatgctgacgacagtgttcagggctcttgttgtctatgactgtcta
tgaacctgaaggaaaacaaatcagtgttaggaacactgactggctgctca
ggcacaattagggaaatgtgagctccactggatcagaagtaagggttgct
tcttaattaccgcctctcgaaaaaagggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_12967285_12968342
seq2: B6Ng01-289K17.b_47_1095

seq1  GAATTCTGTCTCAGGAGGTTGGACTAAGTTTAAATTTATTCCCACTGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTCAGGAGGTTGGACTAAGTTTAAATTTATTCCCACTGGTA  50

seq1  GGTTTTGTTTTTTGAGTTAGTTAGTTAGTTAGTTAGTTTTTGTTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTTTTTTGAGTTAGTTAGTTAGTTAGTTAGTTTTTGTTTTTGTT  100

seq1  TTTGTTCAATTGCTGAAAACACTTTCAGTGGCCTTTGGGAGTTTATCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAATTGCTGAAAACACTTTCAGTGGCCTTTGGGAGTTTATCCTT  150

seq1  GAGTTGATAAATTCTTTTTTTTTTTTTTTAATTCACTTTGCAGTCGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGATAAATTCTTTTTTTTTTTTTTTAATTCACTTTGCAGTCGGATT  200

seq1  ATAAAACTGTTTCGTTTCAGAAGGAGGGTTTGGCTTTTTAAAGGCCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTGTTTCGTTTCAGAAGGAGGGTTTGGCTTTTTAAAGGCCATCA  250

seq1  ATCAATTGTTTGGCCCTAATTAATTTTGCCTGAGAGCATCTGACATGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTGTTTGGCCCTAATTAATTTTGCCTGAGAGCATCTGACATGTTC  300

seq1  ACAGAAGTAGCAATTAACGTGGAATGGAGGTGCAATCACCATCTCAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTAGCAATTAACGTGGAATGGAGGTGCAATCACCATCTCAAATA  350

seq1  TTTAAACAATGTGATTATATAATATCTATCAACAGAATTCTTAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAATGTGATTATATAATATCTATCAACAGAATTCTTAAAAAAAA  400

seq1  AAACCCACTTAGAGATGTAGATGCATAGGGGGTTAAAGTCTTGCTTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCACTTAGAGATGTAGATGCATAGGGGGTTAAAGTCTTGCTTCAGG  450

seq1  GGCTGGAAAATGGAGCTTCAGTTTTTTAACCTCCCTGATCTTCAGTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAAAATGGAGCTTCAGTTTTTTAACCTCCCTGATCTTCAGTCTAT  500

seq1  AAGACAAGATGTTGCCAGCCCCTGGTGCCGACTTCCGGTTGGCCACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGATGTTGCCAGCCCCTGGTGCCGACTTCCGGTTGGCCACACAC  550

seq1  ACTTGGGCCCTTGGAGCTTAAACATGCCTTCAGTAGTCTGCATAGATCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGCCCTTGGAGCTTAAACATGCCTTCAGTAGTCTGCATAGATCGT  600

seq1  ATCAGACAAAAGATTCACTGTACTTTCCCTCAGAGTCAGTCTGTGGGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACAAAAGATTCACTGTACTTTCCCTCAGAGTCAGTCTGTGGGGGG  650

seq1  TCTACCCAGTCATCTTCCAAGCTCCTGGCAAAATGTTCGCACACCCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCAGTCATCTTCCAAGCTCCTGGCAAAATGTTCGCACACCCTGTC  700

seq1  TCGCATTTTGCCCAGGGTCTGGGATAGCGCTGAGCCCCGGGACTGACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCATTTTGCCCAGGGTCTGGGATAGCGCTGAGCCCCGGGACTGACTTC  750

seq1  TCCGGCCCCTACTTTGTGCCAGGCGAGACCTTCTAAGTCTTCAGAGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCCCCTACTTTGTGCCAGGCGAGACCTTCTAAGTCTTCAGAGCCTT  800

seq1  ACGTTATTTTCTCTAAATGTATACCATCTATGAGATACTGCTGCTTCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTATTTTCTCTAAATGTATACCATCTATGAGATACTGCTGCTTCATA  850

seq1  GAAATCTTAGAGACACTGCTATCCCTTGCGTCCCTATTCTGGTTTGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTAGAGACACTGCTATCCCTTGCGTCCCTATTCTGGTTTGTTTC  900

seq1  TTGAGGGGGAGGAAAGAGTTTGCTTGGCTTACAAA-GTTACATTTCATCA  949
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  TTGAGGGGGAGG-AAGAGTTTGCTTGGCTTACAAAGGTTACATTTCATCA  949

seq1  GGTAGGGAAGCTAGGGCAAGAACTTAAAAGCAGAGACC-GCGGAGGACGC  998
      ||||||| ||||||||| || |||  || ||||||||| ||||  |||||
seq2  GGTAGGG-AGCTAGGGC-AGGACT--AAGGCAGAGACCGGCGGGAGACGC  995

seq1  TGCTTTCTGGCTTGCTCTCATGGCTTGCTCAGACTCCTTAAATAAAACCT  1048
      ||| ||||||  |||||||||||| |||||||||| | ||||||||  ||
seq2  TGC-TTCTGGGCTGCTCTCATGGC-TGCTCAGACT-CGTAAATAAA--CT  1040

seq1  GGACCACCTG  1058
       |||||||||
seq2  -GACCACCTG  1049

seq1: chr12_13122390_13123266
seq2: B6Ng01-289K17.g_67_946 (reverse)

seq1  TTCCCTTTTTCTGAGGGCGGGTAATTCAG-AGCAACCCTTACTTCTGATC  49
      ||||||||||  ||| |  ||||||| || ||||||||||||||||||||
seq2  TTCCCTTTTTTCGAGAGGCGGTAATTAAGAAGCAACCCTTACTTCTGATC  50

seq1  AAGTGGAGCTCACA-TTCCCT-AGTGTGCCTGAGCAG-CAGTCAGTGTTC  96
       ||||||||||||| |||||| | ||||||||||||| ||||||||||||
seq2  CAGTGGAGCTCACATTTCCCTAATTGTGCCTGAGCAGCCAGTCAGTGTTC  100

seq1  CTAACACTGATTTTGTTTTCCTTCAGGTTCATAGACAGTCATAGACAACA  146
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTAACACTGA-TTTGTTTTCCTTCAGGTTCATAGACAGTCATAGACAACA  149

seq1  AGAGCCCTGAACACTGTCGTCAGCATCTCGTGTAACACTCACTGGAGCCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCTGAACACTGTCGTCAGCATCTCGTGTAACACTCACTGGAGCCT  199

seq1  TTGATGAAGGTGATTGCATTGTCCATCTTGTGTGGATTAATAAAATGGAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAAGGTGATTGCATTGTCCATCTTGTGTGGATTAATAAAATGGAG  249

seq1  ATTTAGAAAGGGGTCTGATGACATCCTTAGACTTCAGAAATGACACTCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAAGGGGTCTGATGACATCCTTAGACTTCAGAAATGACACTCAT  299

seq1  TTGTTTACTATTACACTTCAAAAGTTATAAACCAAACAGTGCAGGTCTAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACTATTACACTTCAAAAGTTATAAACCAAACAGTGCAGGTCTAT  349

seq1  TATTCTTTTTTTTTTTTTTTTTAAAAATCTTCTTCAAGACAGATTGTCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTTTTTTTTTTTTTTAAAAATCTTCTTCAAGACAGATTGTCTT  399

seq1  TTTCTTGTTGTTGTTTGTTTTAAAGCTGTTCTAGGTCTTTTGAGAAGAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTGTTGTTTGTTTTAAAGCTGTTCTAGGTCTTTTGAGAAGAAG  449

seq1  GCAACAGAAACTTTAATACCATAATCCCCTCCCCCTGCCCCTCTCCTGAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGAAACTTTAATACCATAATCCCCTCCCCCTGCCCCTCTCCTGAG  499

seq1  GGTTGAGGATCTCTTCCTTACAGCTGCTTCCTGCCCTCTGCTGATCGAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGGATCTCTTCCTTACAGCTGCTTCCTGCCCTCTGCTGATCGAGG  549

seq1  TGAGCTAACTGTTTCACAAACACGGATTAGTCTTATTTTTTTTAAATCTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAACTGTTTCACAAACACGGATTAGTCTTATTTTTTTTAAATCTC  599

seq1  TTTCACTCTCCATCTGAAGAGACCAGCTCTTCTATTTTTAACTCCTTGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCTCCATCTGAAGAGACCAGCTCTTCTATTTTTAACTCCTTGCC  649

seq1  TTGCAATAGAAGATGGATTAGACACCTTCCTGACTTCTTTAACAAAGTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATAGAAGATGGATTAGACACCTTCCTGACTTCTTTAACAAAGTCC  699

seq1  ATGAAGTTCAGTGACTATGGCGCCAGGTAGGCTGGCTGCCTCCACAGTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTCAGTGACTATGGCGCCAGGTAGGCTGGCTGCCTCCACAGTGT  749

seq1  GCTCTGCAGTTAATGGTTGGCTTTTGCTCCTGTCCCCTCTCCCAGCTACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCAGTTAATGGTTGGCTTTTGCTCCTGTCCCCTCTCCCAGCTACT  799

seq1  GTGTTTTAGTTCCTCAGTGTGTTGCCAGTGACTTCAGAGCTGCTCTCTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTAGTTCCTCAGTGTGTTGCCAGTGACTTCAGAGCTGCTCTCTCT  849

seq1  TCTCACCTACCAGGAAAGGAGTTAGGAATTC  877
      |||||||||||||||||||||||||||||||
seq2  TCTCACCTACCAGGAAAGGAGTTAGGAATTC  880