BAC Information

Click to search

BAC

Clone NameB6Ng01-289M07
Chromosome12 (Build37)
Map Location 46,938,444 - 47,086,155
singlet/doubletdoublet
Overlap genenone
Upstream geneStxbp6
Downstream geneLOC664952, Nova1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289M07.bB6Ng01-289M07.g
ACCGA087075GA087076
length1,1201,122
definitionB6Ng01-289M07.b B6Ng01-289M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,085,032 - 47,086,155)(46,938,444 - 46,939,561)
sequence
gaattcccaaaacagtgacatgcacctccgtggaaaatttatagcttgtt
tgaaaaattcttccaaatggataactcaatgcatccagtgaagttataca
aaacacacaatcaccctgcacttgagtttctatatctatgagaaaacaat
tattatttttgacttgtctaagtcacaagatctctctgaagcctatgtga
gatatgtggctaagtatttcataagttgttaagctctacaaagatatcaa
atattattgtgaaaactgacatcccaaagtatcttttctttcagtattac
tataatgaagtcaaatgccaaacattctctggagcaatattttattgtgt
tttgatatattcagctttttcggagatgtttaatgcaattttcgctatac
tttatagaccatagcaatcaaaaaattaagttggcatttctctccatatt
gatgagatgaaattcatattatcctgtgaagaaaaatggattttgtttct
gtgaagccgcatatttctcataattctataccatgaggttcaaagaagtc
tttatgaccaggagtcctagtatattgctttttttctaagatttcttttt
tttgtttttttgcttgtttgtttgttttatgcatggcttttctccttagt
catcatccacgggactccaagaagtcttagggatatgaaggcacagactt
gaagtccagcttcatctccaacattgtggaaaggaactttatatcaccat
gcagtgccctgtggttcactatgccactaggagagagctccgggagaatg
aatgacctccagggtgtccatgttgagtctaagatttcttctaacacaca
tgtaaaaaaatttaagcagtataattaaaatttatcattttcataacatt
tgtattatttatgcttattttccgaatttcattagattattttctgagtt
tccttaattttgcacttattaatgattaagttgttaaatagaataacatt
gatgctaatgagaatgactagatttccctgggtaaaaagggaaaagtaga
acaagaggtttaggttcattaattttataacctctcagagaaaaccaaga
acaattgtttccacttcttt

gaattccacgaaatgaacttcattgacggcactgaatgaatgaaccgggt
ggaactcaggagaactcagctaaccttcactacattgcctgaactccgct
gaagtgcactcactgaaccacccttcattcctgactccttatgtacagct
ctgaagtagcctctctttcctgtttattctccaggtagtttggcatatcc
tatctctgactcattctgtcaaatatcattctgatttgtcactttttctg
cccctcagttagacatcacattcaagcatggctgctttcttctacaaact
aattttaccttcactatttgagattaaaggcatagactaagtgcttgtct
gggttccatgccagggggattaaaggtgtgccattccagccaaatcacac
agacctagaaggtccttcaatatgatttcttgtcagaacagccatgtttc
tggactaaacttcccctgcaactttcaggtttgtaagtggagctttagag
caaaatgcatgggactcaaatctggtgaaattttgagtaaatttcattca
actttacttacgaaatcacaataattttatctcttcaattttgattaaac
aaattttgtgatataactgattcagcaactttatctcccagagtgaaaat
gtttttttttaatgcttaaaggatatatatatatatatatatatatagtc
atcttaatattggattaagaaactgcttatctcttagtttcttctgaatg
gtttaaatattattactgctgttgaagtgtgaaatttaaatctgtccttt
actttttaaatagtattgggcagtaaagtataacttttttataggtctat
gtgaaataaactattaaaatataatgggtaaaactgagaaaatttttcag
aagtttagactatttctaagagggaaattccataaaatagatatccatca
cctttttcctatatgttgttgataaacagggattaagtatttaagaaagc
atttacagtcatcattaaaaattgtatatattcacagtgtggcttacaca
taatagtcatatatggatcatactacagaggttagggttgctcatgaaca
ttagggaagtctactttctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47085032_47086155
seq2: B6Ng01-289M07.b_46_1165 (reverse)

seq1  AAAGAAGTTTGAAACAATTGTTCTTGTGTTTCCTTCTGAGAGTTTAT-AA  49
      ||||||| | ||||||||||||||||  ||||  |||||||| |||| ||
seq2  AAAGAAG-TGGAAACAATTGTTCTTGGTTTTC--TCTGAGAGGTTATAAA  47

seq1  ATAATTGAAACTTAAAACCTTCTTG-TCTACTTTCCCTTTTTTACCCAGG  98
      || | |||| ||  ||||| ||||| |||||||| || ||||||||||||
seq2  ATTAATGAACCT--AAACC-TCTTGTTCTACTTTTCCCTTTTTACCCAGG  94

seq1  GAAATCTAGTCATTCTCATTAGCATCAATG-TATTCTATTTAACAACTTA  147
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAAATCTAGTCATTCTCATTAGCATCAATGTTATTCTATTTAACAACTTA  144

seq1  ATTCATTAATAAGTGCAAAATTAAGGAAACTCAGAAAATAATCTAATGAA  197
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TCATTAATAAGTGCAAAATTAAGGAAACTCAGAAAATAATCTAATGAA  193

seq1  ATTCGGAAAATAAGCATAAATAATACAAATGTTATGAAAATGATAAATTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGAAAATAAGCATAAATAATACAAATGTTATGAAAATGATAAATTT  243

seq1  TAATTATACTGCTTAAATTTTTTTACATGTGTGTTAGAAGAAATCTTAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATACTGCTTAAATTTTTTTACATGTGTGTTAGAAGAAATCTTAGA  293

seq1  CTCAACATGGACACCCTGGAGGTCATTCATTCTCCCGGAGCTCTCTCCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACATGGACACCCTGGAGGTCATTCATTCTCCCGGAGCTCTCTCCTA  343

seq1  GTGGCATAGTGAACCACAGGGCACTGCATGGTGATATAAAGTTCCTTTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATAGTGAACCACAGGGCACTGCATGGTGATATAAAGTTCCTTTCC  393

seq1  ACAATGTTGGAGATGAAGCTGGACTTCAAGTCTGTGCCTTCATATCCCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTGGAGATGAAGCTGGACTTCAAGTCTGTGCCTTCATATCCCTA  443

seq1  AGACTTCTTGGAGTCCCGTGGATGATGACTAAGGAGAAAAGCCATGCATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCTTGGAGTCCCGTGGATGATGACTAAGGAGAAAAGCCATGCATA  493

seq1  AAACAAACAAACAAGCAAAAAAACAAAAAAAAGAAATCTTAGAAAAAAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAGCAAAAAAACAAAAAAAAGAAATCTTAGAAAAAAAG  543

seq1  CAATATACTAGGACTCCTGGTCATAAAGACTTCTTTGAACCTCATGGTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATACTAGGACTCCTGGTCATAAAGACTTCTTTGAACCTCATGGTAT  593

seq1  AGAATTATGAGAAATATGCGGCTTCACAGAAACAAAATCCATTTTTCTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATGAGAAATATGCGGCTTCACAGAAACAAAATCCATTTTTCTTC  643

seq1  ACAGGATAATATGAATTTCATCTCATCAATATGGAGAGAAATGCCAACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATAATATGAATTTCATCTCATCAATATGGAGAGAAATGCCAACTT  693

seq1  AATTTTTTGATTGCTATGGTCTATAAAGTATAGCGAAAATTGCATTAAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTGATTGCTATGGTCTATAAAGTATAGCGAAAATTGCATTAAAC  743

seq1  ATCTCCGAAAAAGCTGAATATATCAAAACACAATAAAATATTGCTCCAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCGAAAAAGCTGAATATATCAAAACACAATAAAATATTGCTCCAGA  793

seq1  GAATGTTTGGCATTTGACTTCATTATAGTAATACTGAAAGAAAAGATACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTGGCATTTGACTTCATTATAGTAATACTGAAAGAAAAGATACT  843

seq1  TTGGGATGTCAGTTTTCACAATAATATTTGATATCTTTGTAGAGCTTAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATGTCAGTTTTCACAATAATATTTGATATCTTTGTAGAGCTTAAC  893

seq1  AACTTATGAAATACTTAGCCACATATCTCACATAGGCTTCAGAGAGATCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATGAAATACTTAGCCACATATCTCACATAGGCTTCAGAGAGATCT  943

seq1  TGTGACTTAGACAAGTCAAAAATAATAATTGTTTTCTCATAGATATAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTAGACAAGTCAAAAATAATAATTGTTTTCTCATAGATATAGAA  993

seq1  ACTCAAGTGCAGGGTGATTGTGTGTTTTGTATAACTTCACTGGATGCATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGTGCAGGGTGATTGTGTGTTTTGTATAACTTCACTGGATGCATT  1043

seq1  GAGTTATCCATTTGGAAGAATTTTTCAAACAAGCTATAAATTTTCCACGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATCCATTTGGAAGAATTTTTCAAACAAGCTATAAATTTTCCACGG  1093

seq1  AGGTGCATGTCACTGTTTTGGGAATTC  1124
      |||||||||||||||||||||||||||
seq2  AGGTGCATGTCACTGTTTTGGGAATTC  1120


seq1: chr12_46938444_46939561
seq2: B6Ng01-289M07.g_71_1192

seq1  GAATTCCACGAAATGAACTTCATTGACGGCACTGAATGAATGAACCGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGAAATGAACTTCATTGACGGCACTGAATGAATGAACCGGGT  50

seq1  GGAACTCAGGAGAACTCAGCTAACCTTCACTACATTGCCTGAACTCCGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCAGGAGAACTCAGCTAACCTTCACTACATTGCCTGAACTCCGCT  100

seq1  GAAGTGCACTCACTGAACCACCCTTCATTCCTGACTCCTTATGTACAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCACTCACTGAACCACCCTTCATTCCTGACTCCTTATGTACAGCT  150

seq1  CTGAAGTAGCCTCTCTTTCCTGTTTATTCTCCAGGTAGTTTGGCATATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTAGCCTCTCTTTCCTGTTTATTCTCCAGGTAGTTTGGCATATCC  200

seq1  TATCTCTGACTCATTCTGTCAAATATCATTCTGATTTGTCACTTTTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGACTCATTCTGTCAAATATCATTCTGATTTGTCACTTTTTCTG  250

seq1  CCCCTCAGTTAGACATCACATTCAAGCATGGCTGCTTTCTTCTACAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAGTTAGACATCACATTCAAGCATGGCTGCTTTCTTCTACAAACT  300

seq1  AATTTTACCTTCACTATTTGAGATTAAAGGCATAGACTAAGTGCTTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACCTTCACTATTTGAGATTAAAGGCATAGACTAAGTGCTTGTCT  350

seq1  GGGTTCCATGCCAGGGGGATTAAAGGTGTGCCATTCCAGCCAAATCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCATGCCAGGGGGATTAAAGGTGTGCCATTCCAGCCAAATCACAC  400

seq1  AGACCTAGAAGGTCCTTCAATATGATTTCTTGTCAGAACAGCCATGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTAGAAGGTCCTTCAATATGATTTCTTGTCAGAACAGCCATGTTTC  450

seq1  TGGACTAAACTTCCCCTGCAACTTTCAGGTTTGTAAGTGGAGCTTTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTAAACTTCCCCTGCAACTTTCAGGTTTGTAAGTGGAGCTTTAGAG  500

seq1  CAAAATGCATGGGACTCAAATCTGGTGAAATTTTGAGTAAATTTCATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGCATGGGACTCAAATCTGGTGAAATTTTGAGTAAATTTCATTCA  550

seq1  ACTTTACTTACGAAATCACAATAATTTTATCTCTTCAATTTTGATTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTTACGAAATCACAATAATTTTATCTCTTCAATTTTGATTAAAC  600

seq1  AAATTTTGTGATATAACTGATTCAGCAACTTTATCTCCCAGAGTGAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGTGATATAACTGATTCAGCAACTTTATCTCCCAGAGTGAAAAT  650

seq1  GTTTTTTTTTAATGCTTAAAGGATATATATATATATATATATATATAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTAATGCTTAAAGGATATATATATATATATATATATATAGTC  700

seq1  ATCTTAATATTGGATTAAGAAACTGCTTATCTCTTAGTTTCTTCTGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATATTGGATTAAGAAACTGCTTATCTCTTAGTTTCTTCTGAATG  750

seq1  GTTTAAATATTATTACTGCTGTTGAAGTGTGAAATTTAAATCTGTCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATATTATTACTGCTGTTGAAGTGTGAAATTTAAATCTGTCCTTT  800

seq1  ACTTTTTAAATAGTATTGGGCAGT-AAGTATAACTTTTTTATAGGTCTAT  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTTTTTAAATAGTATTGGGCAGTAAAGTATAACTTTTTTATAGGTCTAT  850

seq1  GTGAAATAAACTATTAAAATATAAT-GGTAAAACTGAGAAAAATTTTTCA  898
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  GTGAAATAAACTATTAAAATATAATGGGTAAAACTGAG-AAAATTTTTCA  899

seq1  GAAGTTTAGACTATTTCTAAGAGGAAAATTCCATAAAATAGATATCCATC  948
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAAGTTTAGACTATTTCTAAGAGGGAAATTCCATAAAATAGATATCCATC  949

seq1  ACC-TTTTCCTATATGTTGTTGATAAACA-GGATTAAGTATTTAAGAAAG  996
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACCTTTTTCCTATATGTTGTTGATAAACAGGGATTAAGTATTTAAGAAAG  999

seq1  CATTTACAATTCATCATTAAAAATTGTAATATATTCACAGTGTGGC-TAC  1045
      ||||||| | ||||||||||||||||| |||||||||||||||||| |||
seq2  CATTTAC-AGTCATCATTAAAAATTGT-ATATATTCACAGTGTGGCTTAC  1047

seq1  ACAATATAGTCATATATGGATCATACTACAGA-GTTAGGGTTGCTCATGA  1094
      |||  ||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACATAATAGTCATATATGGATCATACTACAGAGGTTAGGGTTGCTCATGA  1097

seq1  ACATTAAGGAAGTCTAC-TTCTCTT  1118
      |||||| |||||||||| |||||||
seq2  ACATTAGGGAAGTCTACTTTCTCTT  1122


| Home | SequenceCutter | Blast | Download |