BAC Information

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BAC

Clone NameB6Ng01-292I06
Chromosome12 (Build37)
Map Location 45,668,312 - 45,669,427
singlet/doubletsinglet
Overlap geneNrcam
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8
Downstream geneEG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292I06.bB6Ng01-292I06.g
ACCGA089135GA089136
length1,2151,134
definitionB6Ng01-292I06.b B6Ng01-292I06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatttactgactcacatatattgaaccatctctgtgatgaagcc
ttcttggtcatgtggtttgttgtgtgatgcttcctataagctgtgtggtt
ttcttcctggttcttgctcctggaataatgatgctgagactcaaatatat
ttacaagtagctagggcatatagatagacatgttctctgactagctcatg
agttaatatcacataagttctgccatatggctggcttctgtgctcatttc
tcatattctctactccttcatattccagggccaatcctcccatgcctgac
tctatcctagaatccttttgtctactagatgttccaccttctattcttct
ttttcctataggccatggcttttctatttacaagttatgtgtctatacaa
tatacaagatattctcgctacaatggatgatctcttttatggatttttgg
atgcagtttgcatgtattttattgagcattttcatatctatgttcataaa
ttgctcggtaattctctttctttgttgggtctttgtgtggcttggagatt
aggataactgtggccccataaaataaattggaaaatgttccttctatttt
ttattttgtagaataattagagaagtattggcattgagtcttctttgaaa
gtttgtttgaattctgcactaataccatcaggccctggactttttggttg
agagatttctactgagtgtttctatttcagtaggggttctaggtgtgttt
aaattgattaactgatcttggtaagaagtatgtgttgagaaatttttcat
ttgttttagattttcttgtttggtagagtacaggttttgaaagcagatcc
ttatgtttctatagatttcctcataactgttgttatgttctctactttat
ctcttactttgttaatttacatattctctctttgcatttcagttaattta
aataaagggtttgcaagtcttatcaattttgtcaaagaaccaacacttat
ttcatgattctttgtactttttgttgaattttatttactcagcattgatt
ttgattatttcttgctatccactttttggggtgtatgatttctctttgtg
gttctagagctttaccgagtatgttaagtgtcttcctatatagcttgtat
agcttgttgaagcttattttgtccaaaaggtaaagatagacctaacacac
aattgtagctgaatc

gaattcaaatctgctgtacccatacacaagcagaacatggcagttcatgc
cagtaactccagtgctgaggaacagaggcaggcaaatcctagaagcacag
tagccaatcgcatagcagacattagcctttatcctttgtgctctctcacc
tgcacgtgtgcatttccacactacatatgcccacaaacaaatgtaacacg
ccaacaacaacaataataaatattaaagaaatattattttaaaattccat
ttccacgcagtgtgcacctaggggacaacactgatgttttatgtctgaga
aacttactcatttcctgttaaaagtcaccagggaatgaacaaaagaaggg
gcctaacagtgccctgttatttttctgagtttggaaaataattagaaatt
atctccagaaatatgtttatttagaaaactcatctttattcaacacacaa
atatcagatgtgattttgtagcataatcttagctagatttcacatagagt
cacactaatcgttctctaaaatacctatcctctatggacaagtaatactg
ctttactgaagagaaaaagatcccatatttatatgtccactactccccca
gaactcaaacacccttctagaaaaaagttaggtttttttttttttgtctt
agagaagagagttaaatttgaaagcacaattgcaggaggccgccctgctt
ctcagtgccctaaggatggctgtgcatgcagagacctcccttcttcctaa
aaagcagtccccaggcacctcctgattgaatctttccctgtgtctcagaa
acactgacaatctcttgaacaatgcatgccacttttcctgcatttgtctc
tcagcccgactgttcagtctgccttgtcttgctggaagtgaagctttggg
tgttatttctggcctatgttcattctgctcattctgctcatgagaggaca
cacacttgagcatgctgaagacattgcttctgcctttactggattttggc
aatccccttattgggggtctttttggaaaagcagcaagcagaagtcccgt
gattgggttggcttggggtggtgcatgtttttgggcaaccttcaggtggt
gcctgtatccatttcaattggcagtccctgtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_45668312_45669427
seq2: B6Ng01-292I06.g_69_1202

seq1  GAATTCAAATCTGCTGTACCCATACACAAGCAGAACATGGCAGTTCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCTGCTGTACCCATACACAAGCAGAACATGGCAGTTCATGC  50

seq1  CAGTAACTCCAGTGCTGAGGAACAGAGGCAGGCAAATCCTAGAAGCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTCCAGTGCTGAGGAACAGAGGCAGGCAAATCCTAGAAGCACAG  100

seq1  TAGCCAATCGCATAGCAGACATTAGCCTTTATCCTTTGTGCTCTCTCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAATCGCATAGCAGACATTAGCCTTTATCCTTTGTGCTCTCTCACC  150

seq1  TGCACGTGTGCATTTCCACACTACATATGCCCACAAACAAATGTAACACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGTGTGCATTTCCACACTACATATGCCCACAAACAAATGTAACACG  200

seq1  CCAACAACAACAATAATAAATATTAAAGAAATATTATTTTAAAATTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACAACAATAATAAATATTAAAGAAATATTATTTTAAAATTCCAT  250

seq1  TTCCACGCAGTGTGCACCTAGGGGACAACACTGATGTTTTATGTCTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACGCAGTGTGCACCTAGGGGACAACACTGATGTTTTATGTCTGAGA  300

seq1  AACTTACTCATTTCCTGTTAAAAGTCACCAGGGAATGAACAAAAGAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACTCATTTCCTGTTAAAAGTCACCAGGGAATGAACAAAAGAAGGG  350

seq1  GCCTAACAGTGCCCTGTTATTTTTCTGAGTTTGGAAAATAATTAGAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACAGTGCCCTGTTATTTTTCTGAGTTTGGAAAATAATTAGAAATT  400

seq1  ATCTCCAGAAATATGTTTATTTAGAAAACTCATCTTTATTCAACACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAGAAATATGTTTATTTAGAAAACTCATCTTTATTCAACACACAA  450

seq1  ATATCAGATGTGATTTTGTAGCATAATCTTAGCTAGATTTCACATAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGATGTGATTTTGTAGCATAATCTTAGCTAGATTTCACATAGAGT  500

seq1  CACACTAATCGTTCTCTAAAATACCTATCCTCTATGGACAAGTAATACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAATCGTTCTCTAAAATACCTATCCTCTATGGACAAGTAATACTG  550

seq1  CTTTACTGAAGAGAAAAAGATCCCATATTTATATGTCCACTACTCCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTGAAGAGAAAAAGATCCCATATTTATATGTCCACTACTCCCCCA  600

seq1  GAACTCAAACACCCTTCTAGAAAAAAGTTAGGTTTTTTTTTTTTTGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAACACCCTTCTAGAAAAAAGTTAGGTTTTTTTTTTTTTGTCTT  650

seq1  AGAGAAGAGAGTTAAATTTGAAAGCACAATTGCAGGAGGCCGCCCTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGAGTTAAATTTGAAAGCACAATTGCAGGAGGCCGCCCTGCTT  700

seq1  CTCAGTGCCCTAAGGATGGCTGTGCATGCAGAGACCTCCC-TCTTCCTAA  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTCAGTGCCCTAAGGATGGCTGTGCATGCAGAGACCTCCCTTCTTCCTAA  750

seq1  AAAGCAGTCCCCAGGCACCTCCTGATTGAATC-TTCCCTGTGTCTCAG-A  797
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  AAAGCAGTCCCCAGGCACCTCCTGATTGAATCTTTCCCTGTGTCTCAGAA  800

seq1  ACACTGACAATCTCTTGAACAATGCATGCCAC-TTTCCTGCATTTGTCTC  846
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACACTGACAATCTCTTGAACAATGCATGCCACTTTTCCTGCATTTGTCTC  850

seq1  TCAGCCCGACTGTTCAGTCTGCCTTGTCTTGCTGGAAGTGAAGCTTT-GG  895
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCAGCCCGACTGTTCAGTCTGCCTTGTCTTGCTGGAAGTGAAGCTTTGGG  900

seq1  TGTTATTTCT-GCCTATGTTCATTTCTGCTCATTTCTGCTCATGAGAGGA  944
      |||||||||| ||||||||||| ||||||||| |||||||||||||||||
seq2  TGTTATTTCTGGCCTATGTTCA-TTCTGCTCA-TTCTGCTCATGAGAGGA  948

seq1  CACACAC-TGAGCATGCTGAAGACA-TGC-TCTG-CTTTACTGGA-TTTG  989
      ||||||| ||||||||||||||||| ||| |||| |||||||||| ||||
seq2  CACACACTTGAGCATGCTGAAGACATTGCTTCTGCCTTTACTGGATTTTG  998

seq1  GCAACCCCCTAATTTGGGGTCTTTT--GAAAAGCAAGCAAGCAGAAGT-C  1036
      |||| ||||| ||| ||||||||||  ||||||| ||||||||||||| |
seq2  GCAATCCCCTTATTGGGGGTCTTTTTGGAAAAGC-AGCAAGCAGAAGTCC  1047

seq1  CGTGA-TGGGTTGGCTTGGG--TGTGCAGTGTTTTT-GGCAACC-TCAGG  1081
      ||||| ||||||||||||||   ||||| ||||||| ||||||| |||||
seq2  CGTGATTGGGTTGGCTTGGGGTGGTGCA-TGTTTTTGGGCAACCTTCAGG  1096

seq1  T-GTGTCTGTAT-CATTTCCATT-GCATGCTCTGTGAC  1116
      | ||| |||||| |||||| ||| |||  | |||||||
seq2  TGGTGCCTGTATCCATTTCAATTGGCAGTCCCTGTGAC  1134


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