BAC Information

Click to search

BAC

Clone NameB6Ng01-292N20
Chromosome12 (Build37)
Map Location 98,207,323 - 98,340,550
singlet/doubletdoublet
Overlap genenone
Upstream gene1700019M22Rik, LOC100039664, EG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292N20.bB6Ng01-292N20.g
ACCGA089392GA089393
length715942
definitionB6Ng01-292N20.b B6Ng01-292N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,339,835 - 98,340,550)(98,207,323 - 98,208,171)
sequence
gaattcctatttttttatatttagcttcttctacttacattttctttgag
gttctcttctttaagtctattggccttgactttttgtcaaaatatcatac
ataaacatgtatacacatatatttataaaattctgtctttctcatctttt
agtgatagtgtactgtacagtgagggttggccagcaatagccctttaaaa
atcttgtcagcattgttttggttccactgcacaaactcaatcacacattt
ttgtttaaatattatctattctgacttttaactgaatgggttcactgaat
aatttgcacaaaaggctcagaacattttctgtcttttagaaaatgctgac
ttttattccctctttcaagccttccattaggtttttgttgacttcaagtc
acatagggcctcctccactcctacattttgtcacaattattaacggtcaa
caatgtttgacttgtggcttcttctagtcaatgattctgatgttaatatc
aatatttccttttatggacatatttttgaccccagaagtctgaaaactgt
acccttaatacgagagggagagagagagagagagagagagagagagagag
agagagagagagagagagagagagagagagagaattcttcactgattcat
aaaaacatttattaaatctgaagtagctaaaattcatgtttttttttggt
tggtttgagtcttca

gaattcacctgcaaggatgagctagaaaatgaagctgtatataaatataa
aaacaaagtcttccttattaagttgcatttataagggtatttaatcacat
agactaaaaagtaacttagactccagaatgatattcaaattatgctgtgt
aaaacaagcctatttctgtttccaaattaaaattcaaaagtaattcatcg
gtttctaactttcaccttctttttaaatttatttttactattttttcatt
ttctttccttaatgatttagaattaccattattttatttcctaatgatta
gtagagaagtttgaacatttataccatggacaaaaaaagacatcacaaat
gtcttttgtctgagtcaaactggttaaagcctctcagaggacagccaaac
tatattccttgcctgcaagcaaaacagagaatcattaattgtgtcaggga
ttggttcttgcccatgggatgggtctgaacttgagatgtctattggttgg
tcatttcttcagtctcggctccatccactgtttctccattgattgtagac
tggaaaaatttggggcagaaatttttgtgagtgggttgctccctttatct
ctctcagggggtatttttctggctataacaggtggcctctttaggttcaa
cattcccaatgctgtgtgtgagtcacggctaaggacattcctgctgatgc
ctgagcatctcccttatctcaggtctattcctggagatgctccccccaaa
ccctgtcagttgccgatttccctttaatctcatggccatctgaccatccc
tcatgtcccttcccacacctgattcagaacccccacattctccttcccac
ccctctcctacccaattccctcctttccatcccccttctcatgactattt
tatcccctccttataagtgagattcaatcattcttggcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_98339835_98340550
seq2: B6Ng01-292N20.b_46_760 (reverse)

seq1  TGAAGAC-CAAACCAAACAAAAAAAAACATGAATTTTAGCTACTTCAGA-  48
      ||||||| |||||||| |||||||||||||||||||||||||||||||| 
seq2  TGAAGACTCAAACCAACCAAAAAAAAACATGAATTTTAGCTACTTCAGAT  50

seq1  TTAATAAATGTTTTTATGGAATCAGTGAAGAATTCTCTCTCTCTCTCTCT  98
      ||||||||||||||||| |||||||||||||||  |||||||||||||||
seq2  TTAATAAATGTTTTTAT-GAATCAGTGAAGAAT--TCTCTCTCTCTCTCT  97

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  147

seq1  CCCTCTCGTATTAAGGGTACAGTTTTCAGACTTCTGGGGTCAAAAATATG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCGTATTAAGGGTACAGTTTTCAGACTTCTGGGGTCAAAAATATG  197

seq1  TCCATAAAAGGAAATATTGATATTAACATCAGAATCATTGACTAGAAGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAAAGGAAATATTGATATTAACATCAGAATCATTGACTAGAAGAA  247

seq1  GCCACAAGTCAAACATTGTTGACCGTTAATAATTGTGACAAAATGTAGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAAGTCAAACATTGTTGACCGTTAATAATTGTGACAAAATGTAGGA  297

seq1  GTGGAGGAGGCCCTATGTGACTTGAAGTCAACAAAAACCTAATGGAAGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGAGGCCCTATGTGACTTGAAGTCAACAAAAACCTAATGGAAGGC  347

seq1  TTGAAAGAGGGAATAAAAGTCAGCATTTTCTAAAAGACAGAAAATGTTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGAGGGAATAAAAGTCAGCATTTTCTAAAAGACAGAAAATGTTCT  397

seq1  GAGCCTTTTGTGCAAATTATTCAGTGAACCCATTCAGTTAAAAGTCAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTTGTGCAAATTATTCAGTGAACCCATTCAGTTAAAAGTCAGAA  447

seq1  TAGATAATATTTAAACAAAAATGTGTGATTGAGTTTGTGCAGTGGAACCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATATTTAAACAAAAATGTGTGATTGAGTTTGTGCAGTGGAACCA  497

seq1  AAACAATGCTGACAAGATTTTTAAAGGGCTATTGCTGGCCAACCCTCACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGCTGACAAGATTTTTAAAGGGCTATTGCTGGCCAACCCTCACT  547

seq1  GTACAGTACACTATCACTAAAAGATGAGAAAGACAGAATTTTATAAATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTACACTATCACTAAAAGATGAGAAAGACAGAATTTTATAAATAT  597

seq1  ATGTGTATACATGTTTATGTATGATATTTTGACAAAAAGTCAAGGCCAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATACATGTTTATGTATGATATTTTGACAAAAAGTCAAGGCCAAT  647

seq1  AGACTTAAAGAAGAGAACCTCAAAGAAAATGTAAGTAGAAGAAGCTAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAAAGAAGAGAACCTCAAAGAAAATGTAAGTAGAAGAAGCTAAAT  697

seq1  ATAAAAAAATAGGAATTC  716
      ||||||||||||||||||
seq2  ATAAAAAAATAGGAATTC  715


seq1: chr12_98207323_98208171
seq2: B6Ng01-292N20.g_67_915

seq1  GAATTCACCTGCAAGGATGAGCTAGAAAATGAAGCTGTATATAAATATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGCAAGGATGAGCTAGAAAATGAAGCTGTATATAAATATAA  50

seq1  AAACAAAGTCTTCCTTATTAAGTTGCATTTATAAGGGTATTTAATCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGTCTTCCTTATTAAGTTGCATTTATAAGGGTATTTAATCACAT  100

seq1  AGACTAAAAAGTAACTTAGACTCCAGAATGATATTCAAATTATGCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAAAAGTAACTTAGACTCCAGAATGATATTCAAATTATGCTGTGT  150

seq1  AAAACAAGCCTATTTCTGTTTCCAAATTAAAATTCAAAAGTAATTCATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGCCTATTTCTGTTTCCAAATTAAAATTCAAAAGTAATTCATCG  200

seq1  GTTTCTAACTTTCACCTTCTTTTTAAATTTATTTTTACTATTTTTTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAACTTTCACCTTCTTTTTAAATTTATTTTTACTATTTTTTCATT  250

seq1  TTCTTTCCTTAATGATTTAGAATTACCATTATTTTATTTCCTAATGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTTAATGATTTAGAATTACCATTATTTTATTTCCTAATGATTA  300

seq1  GTAGAGAAGTTTGAACATTTATACCATGGACAAAAAAAGACATCACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAAGTTTGAACATTTATACCATGGACAAAAAAAGACATCACAAAT  350

seq1  GTCTTTTGTCTGAGTCAAACTGGTTAAAGCCTCTCAGAGGACAGCCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGTCTGAGTCAAACTGGTTAAAGCCTCTCAGAGGACAGCCAAAC  400

seq1  TATATTCCTTGCCTGCAAGCAAAACAGAGAATCATTAATTGTGTCAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCTTGCCTGCAAGCAAAACAGAGAATCATTAATTGTGTCAGGGA  450

seq1  TTGGTTCTTGCCCATGGGATGGGTCTGAACTTGAGATGTCTATTGGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTTGCCCATGGGATGGGTCTGAACTTGAGATGTCTATTGGTTGG  500

seq1  TCATTTCTTCAGTCTCGGCTCCATCCACTGTTTCTCCATTGATTGTAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTTCAGTCTCGGCTCCATCCACTGTTTCTCCATTGATTGTAGAC  550

seq1  TGGAAAAATTTGGGGCAGAAATTTTTGTGAGTGGGTTGCTCCCTTTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAATTTGGGGCAGAAATTTTTGTGAGTGGGTTGCTCCCTTTATCT  600

seq1  CTCTCAGGGGGTATTTTTCTGGCTATAACAGGTGGCCTCTTTAGGTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGGGGTATTTTTCTGGCTATAACAGGTGGCCTCTTTAGGTTCAA  650

seq1  CATTCCCAATGCTGTGTGTGAGTCACGGCTAAGGACATTCCTGCTGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCAATGCTGTGTGTGAGTCACGGCTAAGGACATTCCTGCTGATGC  700

seq1  CTGAGCATCTCCCTTATCTCAGGTCTATTCCTGGAGATGCTCCCCCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCATCTCCCTTATCTCAGGTCTATTCCTGGAGATGCTCCCCCCAAA  750

seq1  CCCTGTCAGTTGCCGATTTCCCTTTAATCTCATGGCCATCTGACCATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCAGTTGCCGATTTCCCTTTAATCTCATGGCCATCTGACCATCCC  800

seq1  TCATGTCCCTTCCCACACCTGATTCAGAACCCCCACATTCTCCTTCCCA  849
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCCCTTCCCACACCTGATTCAGAACCCCCACATTCTCCTTCCCA  849


| Home | SequenceCutter | Blast | Download |