BAC Information

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BAC

Clone NameB6Ng01-294A08
Chromosome12 (Build37)
Map Location 87,202,890 - 87,351,253
singlet/doubletdoublet
Overlap geneTtll5
Upstream geneLtbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik
Downstream geneTgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294A08.bB6Ng01-294A08.g
ACCGA090259GA090260
length1,0341,190
definitionB6Ng01-294A08.b B6Ng01-294A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,350,212 - 87,351,253)(87,202,890 - 87,204,067)
sequence
gaattcctgtatatttagtttacactttgagcaacaaactaacttatttt
cttgcaatcttttcctttctttgaccacaggagctctccaggttgctttg
taacttctgacatactccaccagttggctgtcttgcctgcttgagttttt
ttttttttttttttccatatgttggcagctaggtagtccaggcttatatt
ctttttttaattagatattttctttatttacatttcaaatgttttcccct
ttcctagtttcccctccaaaaatcctctatcccctgccccctgcccttgt
tccccaacccacccactcccattctcccaagtgctgggattaaaggcatg
cgccaccactgccctcttttttttttttttttttaaagtaataacttgga
gctggagagatggctcagcaattaagaacactgactactcctagaaactt
gggttcaactcccagtacctacatgacagttcacaactatctgtaatcca
acttctagggaactgcacaccctcagacatacatatatgcaaaacaccaa
tgcacataaaataaaaataaataatttaaaagtaatgactggatttatta
gtaacagcaataggagcagcagaagatatgtatttacatatagatataat
gttgggatagggcctttccccagattttagaacctagagtgtgtgggatt
tatctaactcacagtcaaaagtataaacaaatcttctacagatcccaaat
gaaaggaagctcactttcctaaatgcaaattttgtataaggctctataat
actgatgtccttaaagggcaaacgaagcaactgtggagagattctttctt
gggaggttcagctgggcctggacattaccacatcttcctctcttcctcta
gcactattttgattctgtttgataatgtgtgctatctttaaatatatata
tgtatatactctattttttcttctcctaaatatagcctatgggcacagtc
tggcagtgtgctacagcagagtgctggtgtggtt
gaattcattagggatggatgaatattgatgtcattgttttcatatgatac
atagagatgctgtcaaggctgtggtctgactttgagatgacagcagtggt
atttgggctagaaaatgtcttgtttcagacttttgggtttgtgggggaca
gttattttgtgccagaatttggggagctctatgaacagtgcttgaaagtg
aaacctctgagacactgcccaggctccagtgctgcaccagtacttatgct
atagtgcttacagctctgtggcagagcaggtcctccccactcatctgtag
aatgtggatggtggtatatttgcccctggggttaggtggggataaaataa
tacttgggacatgcttagaacagctcttggcacatggtaaatgctcagca
cctctattaaattgtaattatttctgcaaatgttgctagtcatttccaag
cagctacaatagttagtctcataattgctattgttaccatttacagttag
gagccccttgcccttctgggttgacttgaagctgatctttctgtctaatc
acacatgcagttgttctgtttgaggtttctttatcttactgctttctctg
tgtggagtctgcaataattgcctgcttcccaccatattcagtcttgattc
ccttgccaattcaaattgctctgccagagggctccctcccttctagttct
ctcccacccctttgagctagttcctagttacagcttttagcctcaggcct
gtgatctgcctccctccttcctgctggactttgcacgtggcagtggcctc
ctttttccccagcacatacatgcctgaggctctcactgcttgcctctgtg
cctgctcttctgctggccagagctgggccttttccttcagagccctgcag
agcagcccttttggcagcttgacatcttatgtttgtggaactgctgctca
gtgtccctttagagtctccgtgttgctgttctaacccgaaacagtaaagc
ctttgggggaaggagctgctgactctgaagtttccatggaggcacagatg
tatcgggtttctttcatcactgtgtgctcagatgcctttctcacatgtgg
tggcagtaccacctacactctctttataaaacgacttccatgtgagaact
tttaacacatccaattcaagtcttctatcaacacacggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_87350212_87351253
seq2: B6Ng01-294A08.b_48_1081 (reverse)

seq1  AACCACACCAGCACTCTGCCTGTAGCACACTGGCCAGAACTGTG-CCATA  49
      |||||||||||||||||| |||||||||||| ||||| |||||| |||||
seq2  AACCACACCAGCACTCTG-CTGTAGCACACT-GCCAG-ACTGTGCCCATA  47

seq1  GGCTTATATTTTAGGGAGAAG-AAAAATAGAAGTATATACATATATATAT  98
      ||| |||||||   ||||||| |||||||| |||||||||||||||||| 
seq2  GGC-TATATTT--AGGAGAAGAAAAAATAG-AGTATATACATATATATA-  92

seq1  TTTAAAGATAAGCACACATTATTCAAACAGAATCAAAATAGTGCTAGGAG  148
      ||||||||| ||||||||||| |||||||||||||||||||||||| |||
seq2  TTTAAAGAT-AGCACACATTA-TCAAACAGAATCAAAATAGTGCTA-GAG  139

seq1  GAAGAGAGGAAGATGTGGTAATGTCCAGG-CCAGCTGAACCTCCCAAGAA  197
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAAGAGAGGAAGATGTGGTAATGTCCAGGCCCAGCTGAACCTCCCAAGAA  189

seq1  AGAATCTCTCCACAGTTGCTTCGTTTGCCCTTTAAGGACATCAGTATTAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCTCCACAGTTGCTTCGTTTGCCCTTTAAGGACATCAGTATTAT  239

seq1  AGAGCCTTATACAAAATTTGCATTTAGGAAAGTGAGCTTCCTTTCATTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTATACAAAATTTGCATTTAGGAAAGTGAGCTTCCTTTCATTTG  289

seq1  GGATCTGTAGAAGATTTGTTTATACTTTTGACTGTGAGTTAGATAAATCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGTAGAAGATTTGTTTATACTTTTGACTGTGAGTTAGATAAATCC  339

seq1  CACACACTCTAGGTTCTAAAATCTGGGGAAAGGCCCTATCCCAACATTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCTAGGTTCTAAAATCTGGGGAAAGGCCCTATCCCAACATTAT  389

seq1  ATCTATATGTAAATACATATCTTCTGCTGCTCCTATTGCTGTTACTAATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATGTAAATACATATCTTCTGCTGCTCCTATTGCTGTTACTAATA  439

seq1  AATCCAGTCATTACTTTTAAATTATTTATTTTTATTTTATGTGCATTGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGTCATTACTTTTAAATTATTTATTTTTATTTTATGTGCATTGGT  489

seq1  GTTTTGCATATATGTATGTCTGAGGGTGTGCAGTTCCCTAGAAGTTGGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCATATATGTATGTCTGAGGGTGTGCAGTTCCCTAGAAGTTGGAT  539

seq1  TACAGATAGTTGTGAACTGTCATGTAGGTACTGGGAGTTGAACCCAAGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATAGTTGTGAACTGTCATGTAGGTACTGGGAGTTGAACCCAAGTT  589

seq1  TCTAGGAGTAGTCAGTGTTCTTAATTGCTGAGCCATCTCTCCAGCTCCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAGTAGTCAGTGTTCTTAATTGCTGAGCCATCTCTCCAGCTCCAA  639

seq1  GTTATTACTTTAAAAAAAAAAAAAAAAAAGAGGGCAGTGGTGGCGCATGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTACTTTAAAAAAAAAAAAAAAAAAGAGGGCAGTGGTGGCGCATGC  689

seq1  CTTTAATCCCAGCACTTGGGAGAATGGGAGTGGGTGGGTTGGGGAACAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTTGGGAGAATGGGAGTGGGTGGGTTGGGGAACAAG  739

seq1  GGCAGGGGGCAGGGGATAGAGGATTTTTGGAGGGGAAACTAGGAAAGGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGGCAGGGGATAGAGGATTTTTGGAGGGGAAACTAGGAAAGGGG  789

seq1  AAAACATTTGAAATGTAAATAAAGAAAATATCTAATTAAAAAAAGAATAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTGAAATGTAAATAAAGAAAATATCTAATTAAAAAAAGAATAT  839

seq1  AAGCCTGGACTACCTAGCTGCCAACATATGGAAAAAAAAAAAAAAAAAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGACTACCTAGCTGCCAACATATGGAAAAAAAAAAAAAAAAAAA  889

seq1  CTCAAGCAGGCAAGACAGCCAACTGGTGGAGTATGTCAGAAGTTACAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCAGGCAAGACAGCCAACTGGTGGAGTATGTCAGAAGTTACAAAG  939

seq1  CAACCTGGAGAGCTCCTGTGGTCAAAGAAAGGAAAAGATTGCAAGAAAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGAGAGCTCCTGTGGTCAAAGAAAGGAAAAGATTGCAAGAAAAT  989

seq1  AAGTTAGTTTGTTGCTCAAAGTGTAAACTAAATATACAGGAATTC  1042
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGTTTGTTGCTCAAAGTGTAAACTAAATATACAGGAATTC  1034

seq1: chr12_87202890_87204067
seq2: B6Ng01-294A08.g_66_1255

seq1  GAATTCATTAGGGATGGATGAATATTGATGTCATTGTTTTCATATGATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGGATGGATGAATATTGATGTCATTGTTTTCATATGATAC  50

seq1  ATAGAGATGCTGTCAAGGCTGTGGTCTGACTTTGAGATGACAGCAGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATGCTGTCAAGGCTGTGGTCTGACTTTGAGATGACAGCAGTGGT  100

seq1  ATTTGGGCTAGAAAATGTCTTGTTTCAGACTTTTGGGTTTGTGGGGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGCTAGAAAATGTCTTGTTTCAGACTTTTGGGTTTGTGGGGGACA  150

seq1  GTTATTTTGTGCCAGAATTTGGGGAGCTCTATGAACAGTGCTTGAAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTGTGCCAGAATTTGGGGAGCTCTATGAACAGTGCTTGAAAGTG  200

seq1  AAACCTCTGAGACACTGCCCAGGCTCCAGTGCTGCACCAGTACTTATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCTGAGACACTGCCCAGGCTCCAGTGCTGCACCAGTACTTATGCT  250

seq1  ATAGTGCTTACAGCTCTGTGGCAGAGCAGGTCCTCCCCACTCATCTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCTTACAGCTCTGTGGCAGAGCAGGTCCTCCCCACTCATCTGTAG  300

seq1  AATGTGGATGGTGGTATATTTGCCCCTGGGGTTAGGTGGGGATAAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGATGGTGGTATATTTGCCCCTGGGGTTAGGTGGGGATAAAATAA  350

seq1  TACTTGGGACATGCTTAGAACAGCTCTTGGCACATGGTAAATGCTCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGGACATGCTTAGAACAGCTCTTGGCACATGGTAAATGCTCAGCA  400

seq1  CCTCTATTAAATTGTAATTATTTCTGCAAATGTTGCTAGTCATTTCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTAAATTGTAATTATTTCTGCAAATGTTGCTAGTCATTTCCAAG  450

seq1  CAGCTACAATAGTTAGTCTCATAATTGCTATTGTTACCATTTACAGTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACAATAGTTAGTCTCATAATTGCTATTGTTACCATTTACAGTTAG  500

seq1  GAGCCCCTTGCCCTTCTGGGTTGACTTGAAGCTGATCTTTCTGTCTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCTTGCCCTTCTGGGTTGACTTGAAGCTGATCTTTCTGTCTAATC  550

seq1  ACACATGCAGTTGTTCTGTTTGAGGTTTCTTTATCTTACTGCTTTCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCAGTTGTTCTGTTTGAGGTTTCTTTATCTTACTGCTTTCTCTG  600

seq1  TGTGGAGTCTGCAATAATTGCCTGCTTCCCACCATATTCAGTCTTGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGTCTGCAATAATTGCCTGCTTCCCACCATATTCAGTCTTGATTC  650

seq1  CCTTGCCAATTCAAATTGCTCTGCCAGAGGGCTCCCTCCCTTCTAGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCAATTCAAATTGCTCTGCCAGAGGGCTCCCTCCCTTCTAGTTCT  700

seq1  CTCCCACCCCTTTGAGCTAGTTCCTAGTTACAGCTTTTAGCCTCAGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCCCTTTGAGCTAGTTCCTAGTTACAGCTTTTAGCCTCAGGCCT  750

seq1  GTGATCTGCCTCCCTCCTTCCTGCTGGACTTTGCACGTGGCAGTGGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTGCCTCCCTCCTTCCTGCTGGACTTTGCACGTGGCAGTGGCCTC  800

seq1  CTTTTTCCCCAGCACATACATGCCTGAGGCTCTCACTGCTTGCCTCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCCCAGCACATACATGCCTGAGGCTCTCACTGCTTGCCTCTGTG  850

seq1  CCTGCTCTTCTGCTGGCCAGAGCTGG--CCTTTCCTTCAGAGCCCTGCAG  898
      ||||||||||||||||||||||||||  | ||||||||||||||||||||
seq2  CCTGCTCTTCTGCTGGCCAGAGCTGGGCCTTTTCCTTCAGAGCCCTGCAG  900

seq1  AGCAGCCCTTTTGGCAGCTTGACATCTTATGTTTGTGGAACTGCTGCTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCCTTTTGGCAGCTTGACATCTTATGTTTGTGGAACTGCTGCTCA  950

seq1  GTGTCCCTTTAGAGTCTCCGTGTTGCTGTTCTAACCCGAAACAGTAAAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCTTTAGAGTCTCCGTGTTGCTGTTCTAACCCGAAACAGTAAAGC  1000

seq1  CTTTGGGGGAAGGAGCTGCTGACTCTGAAG-TTCCATGAGGGCACAGATG  1047
      |||||||||||||||||||||||||||||| |||||||  ||||||||||
seq2  CTTTGGGGGAAGGAGCTGCTGACTCTGAAGTTTCCATGGAGGCACAGATG  1050

seq1  TATCGGTTTTC-TTCATCACTGTGTGCTCAG-TGC--TTCTCACATGT-G  1092
      |||||| |||| ||||||||||||||||||| |||  ||||||||||| |
seq2  TATCGGGTTTCTTTCATCACTGTGTGCTCAGATGCCTTTCTCACATGTGG  1100

seq1  TGGCAGTACCCACTA----CTTCTTATATAAACAACTTTTCCCCATTGGT  1138
      ||||||||||  |||    ||  ||||| |||| ||||    ||||  ||
seq2  TGGCAGTACCACCTACACTCTCTTTATA-AAACGACTT----CCAT--GT  1143

seq1  GAGATCTTTAAACA-ATCTAATTC-AGTCTT-----TACACACGGTG  1178
      |||| |||| |||| ||| ||||| ||||||      ||||||||||
seq2  GAGAACTTTTAACACATCCAATTCAAGTCTTCTATCAACACACGGTG  1190