BAC Information

Click to search

BAC

Clone NameB6Ng01-294I17
Chromosome12 (Build37)
Map Location 12,231,780 - 12,232,954
singlet/doubletsinglet
Overlap genenone
Upstream gene5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
Downstream geneD12Ertd553e, LOC100043215, Mycn, EG668473, LOC628449, Ddx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294I17.bB6Ng01-294I17.g
ACCGA090644GA090645
length1,154550
definitionB6Ng01-294I17.b B6Ng01-294I17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgaaaagtagttgctacaagttctaaaaatattactcataaat
aatgctgtttccagaccccttgtgctgagtcaggtaaccctgagccctct
gttcaacaggcctctgatcactcctgtaacgccaatggggaaattagcta
gtgccaagatatttttaactggtctgaacaaacacatcttcatttgcata
cagcaagatgtaaccttagcaacagcgtgtatttttggacaccctttcat
ttaatgcaaatgaagcccatggatgcacccggaatctggtgacagaattc
aacgtgaccaatgcacgtgtcagcagacagccctggtagcccaatttcct
gtcactagtacagatcagcatggccccagatggaataattttaaaacatc
ggttgttcctctttactttccagtcacatttgactattgctcctgttcta
agtggcccggggtgtgggaaaatctggatactgcttgtgtaaagaattac
actttaacagtgtgaaagagaattgaaagtggctatgtagcttctacact
gtgacacaagggcggttccctacaatctctgagccagtgtgtgctagaaa
ctcagggcacacattaagttcattacatcttcttgattgtgaaagttttt
tttttaattaggtattttcttcatttacatttcaaatgctatcccaaaag
tcccccatcccctccaccccatcctctacccacccactcccacttcttgg
ccctggcgttcctctgtactgaggcatataaagtttgcaagaccaaaggg
cctctcttcccaatgacggccgactaggccatcttctgctacatatgcag
ctagagacacgagcttctggggtactgggttagttcatattgttgttgtg
aagttgttttaagtaaacttttttaagtgctttatggctttagtcagatt
ctgtatgtgttcatatctatggtatatacgatgccttgatatgtatttac
tggggtaggacgaataaaccagctactaataagagatctctttgaatgtc
tttttgtcacaaagacatgcaatgactgctagtatgttacgagttgagac
gcatctgttttgaggaacttgccttacagttgtcccctcttggtgtctgc
acct

gaattcactctatgtgctaagttcatgcctaggtagtgacatttcccttg
tggaccttatgttctcatggagatgctgagattaaagaagtaaacacata
tgtaaatattacactctcaaagagctgtatgttgcatgaagaagaaaaag
catgggaaaggccaagctctctagagacaggagagtgaggagaagggctc
atgcatatatttgtgtgtgtgtgtgtgtgtctgttgtgtgtgtgtctgtt
gtgtgtgtgttgtgtgtatacatatatatatatatgtatatatatatgac
tctctccacagacacacacacaacagacccccccacacacacacacacac
acgcatgagcctatatcctcactctcctgtctctagagagcttggccttt
cccatgctttttcttcttcatgcaacatacagctctttgagagtgtaata
ttgacatatgtgtttacttctttaatctcagcatctccatgagaacataa
ggtccacaagggaaatgtcactacctaggcatgtacttagcacatagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_12231780_12232954
seq2: B6Ng01-294I17.b_46_1199 (reverse)

seq1  AGGTGGCAGACACAAAGGAGGGGAACAAATTGTAAGAGCATG-TCCTC-A  48
      |||| |||||||| || |||||||   || |||||| ||| | ||||| |
seq2  AGGT-GCAGACACCAA-GAGGGGA--CAACTGTAAG-GCAAGTTCCTCAA  45

seq1  AACAGATGCCCTTCTCAACTCTGTAAACATACTAGCAGTTCATTTGCAAT  98
      ||||||||  | ||||||||| || ||||||||||||| ||| |||| ||
seq2  AACAGATG--CGTCTCAACTC-GT-AACATACTAGCAG-TCA-TTGC-AT  88

seq1  GTCTTTGTGACAAAAGACATATTCAAAGAGATCTCTTATTAGTTAGCTTG  148
      ||||||||||||||| | | |||||||||||||||||||||| |||| ||
seq2  GTCTTTGTGACAAAA-AGACATTCAAAGAGATCTCTTATTAG-TAGC-TG  135

seq1  TTTTATTCCCTCCTACCCCAGTAAATACATATCAAGGCATCGTATTATAA  198
       |||||| | |||||||||||||||||||||||||||||||||| |||| 
seq2  GTTTATT-CGTCCTACCCCAGTAAATACATATCAAGGCATCGTA-TATA-  182

seq1  CCAATAGATATGGAACACATACAGAATTCTGACCTAAAGCCATAAAGCAC  248
       | |||||||| |||||||||||||| ||||| |||||||||||||||||
seq2  -CCATAGATAT-GAACACATACAGAA-TCTGA-CTAAAGCCATAAAGCAC  228

seq1  TTAAAAAAGTTTTACTTAAAACAACTTCACAACAACAATATGAACTAACC  298
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAG-TTTACTTAAAACAACTTCACAACAACAATATGAACTAACC  277

seq1  CAGTACCCCAGAAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCCCAGAAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATGGC  327

seq1  CTAGTCGGCCGTCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTAT  398
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTAGTCGGCCGTCATTGGGAAGAGAGGCCCTTTGGTCTTGCAAACTTTAT  377

seq1  ATGCCTCAGTACAGAGGAACGCCAGGGCCAAGAAGTGGGAGTGGGTGGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCAGTACAGAGGAACGCCAGGGCCAAGAAGTGGGAGTGGGTGGGT  427

seq1  AGAGGATGGGGTGGAGGGGATGGGGGACTTTTGGGATAGCATTTGAAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATGGGGTGGAGGGGATGGGGGACTTTTGGGATAGCATTTGAAATG  477

seq1  TAAATGAAGAAAATACCTAATTAAAAAAAAAACTTTCACAATCAAGAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAGAAAATACCTAATTAAAAAAAAAACTTTCACAATCAAGAAGA  527

seq1  TGTAATGAACTTAATGTGTGCCCTGAGTTTCTAGCACACACTGGCTCAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGAACTTAATGTGTGCCCTGAGTTTCTAGCACACACTGGCTCAGA  577

seq1  GATTGTAGGGAACCGCCCTTGTGTCACAGTGTAGAAGCTACATAGCCACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTAGGGAACCGCCCTTGTGTCACAGTGTAGAAGCTACATAGCCACT  627

seq1  TTCAATTCTCTTTCACACTGTTAAAGTGTAATTCTTTACACAAGCAGTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCTCTTTCACACTGTTAAAGTGTAATTCTTTACACAAGCAGTAT  677

seq1  CCAGATTTTCCCACACCCCGGGCCACTTAGAACAGGAGCAATAGTCAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTTTCCCACACCCCGGGCCACTTAGAACAGGAGCAATAGTCAAAT  727

seq1  GTGACTGGAAAGTAAAGAGGAACAACCGATGTTTTAAAATTATTCCATCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGGAAAGTAAAGAGGAACAACCGATGTTTTAAAATTATTCCATCT  777

seq1  GGGGCCATGCTGATCTGTACTAGTGACAGGAAATTGGGCTACCAGGGCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCATGCTGATCTGTACTAGTGACAGGAAATTGGGCTACCAGGGCTG  827

seq1  TCTGCTGACACGTGCATTGGTCACGTTGAATTCTGTCACCAGATTCCGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGACACGTGCATTGGTCACGTTGAATTCTGTCACCAGATTCCGGG  877

seq1  TGCATCCATGGGCTTCATTTGCATTAAATGAAAGGGTGTCCAAAAATACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCATGGGCTTCATTTGCATTAAATGAAAGGGTGTCCAAAAATACA  927

seq1  CGCTGTTGCTAAGGTTACATCTTGCTGTATGCAAATGAAGATGTGTTTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTTGCTAAGGTTACATCTTGCTGTATGCAAATGAAGATGTGTTTGT  977

seq1  TCAGACCAGTTAAAAATATCTTGGCACTAGCTAATTTCCCCATTGGCGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCAGTTAAAAATATCTTGGCACTAGCTAATTTCCCCATTGGCGTT  1027

seq1  ACAGGAGTGATCAGAGGCCTGTTGAACAGAGGGCTCAGGGTTACCTGACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTGATCAGAGGCCTGTTGAACAGAGGGCTCAGGGTTACCTGACT  1077

seq1  CAGCACAAGGGGTCTGGAAACAGCATTATTTATGAGTAATATTTTTAGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAAGGGGTCTGGAAACAGCATTATTTATGAGTAATATTTTTAGAA  1127

seq1  CTTGTAGCAACTACTTTTCATGAATTC  1175
      |||||||||||||||||||||||||||
seq2  CTTGTAGCAACTACTTTTCATGAATTC  1154


| Home | SequenceCutter | Blast | Download |