BAC Information

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BAC

Clone NameB6Ng01-294J24
Chromosome12 (Build37)
Map Location 111,640,289 - 111,818,368
singlet/doubletdoublet
Overlap geneLOC100040799, Ppp2r5c
Upstream geneDlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245
Downstream gene9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294J24.bB6Ng01-294J24.g
ACCGA090706GA090707
length8681,166
definitionB6Ng01-294J24.b B6Ng01-294J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,640,289 - 111,641,156)(111,817,185 - 111,818,368)
sequence
gaattcacttcagcagtgacagcaagcccatctgtgggtctgcaaaacca
cacgtgcttccatcagccactggcaaaagataagaccagccatctctggg
tggaattgtcctcacttcagactgagaatggccctaagattaatgatgaa
ttagttatcagcgatcaccaagcatgtaagggagcaaagaaccataggtg
agagatgcagaaaacagggtacgtgtacaatccactcacatggtgacatc
actccatcagcccataggaaaccatttacaggtcaccaagacagccaagt
gacagccttaacacacacacacacacgcacgcacgcatgcacatagcgtg
cctatgtcgctattcacaaaccaaaataacccacagaaagagatgaagaa
ctctcagggacatggcagagagagccacacagggaattctgtgaagtagg
tgtcgctgaaacaccaggacacagggaatggccatcctccccacagcctg
ctctgccgaggacactgtacttcttgccatgaggtgaccatcagctgtcc
tgctcagaagctcagagagaggtacaactgcacagatggccccacgcctg
agatgacacttcagtctctaaccctgtaacaaaaccccacctcacactcg
agatcactgggaagagcttccgacagcagcccaagtggacagagtgtgac
aaagcccatgggggctgggatgatggagacaaacaaagcaagtgggggtg
gtgcagagggatggaaagaaagaaaaaggaaaggaatagagaagagaaga
ggaggcagaaaaagggggaggaaaaggaggacagatcttgggaggatgac
agagggaggataatggag
gaattctccaggtgttagactcccctaagtacctccctctctcacaagac
atcaccaatatcacttcatgaccccatgtctgttagacatttcagaaaga
agacactgttttttaaaaaagggaaaacagaatgagaaacaaactagatt
taaaactgtaagagagctaaaatgtctacaagaaattctaaaagtttttt
ttttttttttgcaataccaggtgttaaatgtgtcacacagctggaaaaaa
aaatgtactcagaaaagttatttgacttggaagtttctaatattgagtct
aagaaataaaacattccttttcttttccattctctttctgaagtttagga
atctcactttagcaggatttagactgtgtgcgcgcatgtgcacatatgta
catgttttgagacaggatctcattatgtagcccaggctggccttgccctc
atggcagtccttcggccttagccccccaggtgctgggttatgaacaccag
gcagcacacctggggatttaactaactacatctgtaaagaatgtggccag
gaaggggtgtctgggctgagcacccactcatctctcaggaaggctgccgt
gctagaaccagcactcggaaacaccaaaacaccttagctgtccacaggca
atgcgccacgagacattcactggtggccagcggggctttcagacctacac
tgcttaaccccaatggttttcctttccactcagcgtctccaaccaacaga
gtaaacctttgtggtgtaacctagagaaaccccatggttcgaaacccatc
atgtgacacagaagaaacccgtgtgaacggctgctctgtgtgcagatgtc
tggtttacgcatgctttgtgggaaactcaagcactgccgagccacacacg
gagcctgtgtttcagagtttggtctggtgggtctgtctgcctgtatcatg
acagcagcagtgggctagtgtacacacagactgtttccagagctgtcact
ggaacttgaagtccacgtgcaaagccagcttttccatttctgctagaaca
atggggagaatggccagacttccagtcccataccgggccgccatgtctca
ccatctgtttaagagtggaatcatgagcatggaattccaattcggtaccc
ctttgcctcagcctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_111640289_111641156
seq2: B6Ng01-294J24.b_47_914

seq1  GAATTCACTTCAGCAGTGACAGCAAGCCCATCTGTGGGTCTGCAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCAGCAGTGACAGCAAGCCCATCTGTGGGTCTGCAAAACCA  50

seq1  CACGTGCTTCCATCAGCCACTGGCAAAAGATAAGACCAGCCATCTCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCTTCCATCAGCCACTGGCAAAAGATAAGACCAGCCATCTCTGGG  100

seq1  TGGAATTGTCCTCACTTCAGACTGAGAATGGCCCTAAGATTAATGATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGTCCTCACTTCAGACTGAGAATGGCCCTAAGATTAATGATGAA  150

seq1  TTAGTTATCAGCGATCACCAAGCATGTAAGGGAGCAAAGAACCATAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATCAGCGATCACCAAGCATGTAAGGGAGCAAAGAACCATAGGTG  200

seq1  AGAGATGCAGAAAACAGGGTACGTGTACAATCCACTCACATGGTGACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCAGAAAACAGGGTACGTGTACAATCCACTCACATGGTGACATC  250

seq1  ACTCCATCAGCCCATAGGAAACCATTTACAGGTCACCAAGACAGCCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATCAGCCCATAGGAAACCATTTACAGGTCACCAAGACAGCCAAGT  300

seq1  GACAGCCTTAACACACACACACACACGCACGCACGCATGCACATAGCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCTTAACACACACACACACACGCACGCACGCATGCACATAGCGTG  350

seq1  CCTATGTCGCTATTCACAAACCAAAATAACCCACAGAAAGAGATGAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTCGCTATTCACAAACCAAAATAACCCACAGAAAGAGATGAAGAA  400

seq1  CTCTCAGGGACATGGCAGAGAGAGCCACACAGGGAATTCTGTGAAGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGGACATGGCAGAGAGAGCCACACAGGGAATTCTGTGAAGTAGG  450

seq1  TGTCGCTGAAACACCAGGACACAGGGAATGGCCATCCTCCCCACAGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCTGAAACACCAGGACACAGGGAATGGCCATCCTCCCCACAGCCTG  500

seq1  CTCTGCCGAGGACACTGTACTTCTTGCCATGAGGTGACCATCAGCTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCGAGGACACTGTACTTCTTGCCATGAGGTGACCATCAGCTGTCC  550

seq1  TGCTCAGAAGCTCAGAGAGAGGTACAACTGCACAGATGGCCCCACGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGAAGCTCAGAGAGAGGTACAACTGCACAGATGGCCCCACGCCTG  600

seq1  AGATGACACTTCAGTCTCTAACCCTGTAACAAAACCCCACCTCACACTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACACTTCAGTCTCTAACCCTGTAACAAAACCCCACCTCACACTCG  650

seq1  AGATCACTGGGAAGAGCTTCCGACAGCAGCCCAAGTGGACAGAGTGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTGGGAAGAGCTTCCGACAGCAGCCCAAGTGGACAGAGTGTGAC  700

seq1  AAAGCCCATGGGGGCTGGGATGATGGAGACAAACAAAGCAAGTGGGGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCATGGGGGCTGGGATGATGGAGACAAACAAAGCAAGTGGGGGTG  750

seq1  GTGCAGAGGGATGGAAAGAAAGAAAAAGGAAAGGAATAGAGAAGAGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGGGATGGAAAGAAAGAAAAAGGAAAGGAATAGAGAAGAGAAGA  800

seq1  GGAGGCAGAAAAAGGGGGAGGAAAAGGAGGACAGATCTTGGGAGGATGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAAAAAGGGGGAGGAAAAGGAGGACAGATCTTGGGAGGATGAC  850

seq1  AGAGGGAGGATAATGGAG  868
      ||||||||||||||||||
seq2  AGAGGGAGGATAATGGAG  868

seq1: chr12_111817185_111818368
seq2: B6Ng01-294J24.g_68_1233 (reverse)

seq1  GTAGGCTGAGGCAAGGGGGTGACGAATGTGAAACTACCATGGCCTTCAGT  50
      |||||||||||||| |||||  |||||  |||  | |||||    ||| |
seq2  GTAGGCTGAGGCAAAGGGGTACCGAATTGGAA--TTCCATG---CTCA-T  44

seq1  GAATGCACTCTTACAGGTGTGGTGAGCAGTGGCCGCCC-GTATGGGGACT  99
      || | |||||||| |    |||||||   |||| |||| |||| ||||||
seq2  GATTCCACTCTTAAACAGATGGTGAGACATGGCGGCCCGGTAT-GGGACT  93

seq1  GTGAGGTCT-GCCA-TCT-CCCACTGGTCTAGGCAGGAAAATGGAAAAGC  146
      | || |||| |||| ||| |||| || |||| ||||  ||||||||||||
seq2  G-GAAGTCTGGCCATTCTCCCCATTGTTCTA-GCAG--AAATGGAAAAGC  139

seq1  TTGCCTTTGCCACGTTGACTTTCCAGGTTCCAGTGACAGCTCTGGAAACA  196
       || ||||| ||||| |||||  || ||||||||||||||||||||||||
seq2  -TGGCTTTG-CACGTGGACTT--CAAGTTCCAGTGACAGCTCTGGAAACA  185

seq1  GTCCTGGTGTG-GTACACTAAGCCCACTGCTGCTGTTCATGATTACAGGC  245
      |||    |||| ||||||| ||||||||||||||| |||||| |||||||
seq2  GTC----TGTGTGTACACT-AGCCCACTGCTGCTG-TCATGA-TACAGGC  228

seq1  AGACAGACCCA-CAGACCAAAACTCTGAAACACAGGCTTCCGTGTGTGGC  294
      ||||||||||| |||||| |||||||||||||||||| ||||||||||||
seq2  AGACAGACCCACCAGACC-AAACTCTGAAACACAGGC-TCCGTGTGTGGC  276

seq1  TCGGCAGGTGCTTGAGTTT-CCACAAAGCATGCGTAAACCAGACATCTGC  343
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  TCGGCA-GTGCTTGAGTTTCCCACAAAGCATGCGTAAACCAGACATCTGC  325

seq1  ACACAGAGCAGCCGTTCACACGGGTTTCTTCTGTGTCACATGATGGGTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGCAGCCGTTCACACGGGTTTCTTCTGTGTCACATGATGGGTTT  375

seq1  CGAACCATGGGGTTTCTCTAGGTTACACCACAAAGGTTTACTCTGTTGGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACCATGGGGTTTCTCTAGGTTACACCACAAAGGTTTACTCTGTTGGT  425

seq1  TGGAGACGCTGAGTGGAAAGGAAAACCATTGGGGTTAAGCAGTGTAGGTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACGCTGAGTGGAAAGGAAAACCATTGGGGTTAAGCAGTGTAGGTC  475

seq1  TGAAAGCCCCGCTGGCCACCAGTGAATGTCTCGTGGCGCATTGCCTGTGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCCCCGCTGGCCACCAGTGAATGTCTCGTGGCGCATTGCCTGTGG  525

seq1  ACAGCTAAGGTGTTTTGGTGTTTCCGAGTGCTGGTTCTAGCACGGCAGCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAAGGTGTTTTGGTGTTTCCGAGTGCTGGTTCTAGCACGGCAGCC  575

seq1  TTCCTGAGAGATGAGTGGGTGCTCAGCCCAGACACCCCTTCCTGGCCACA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGAGATGAGTGGGTGCTCAGCCCAGACACCCCTTCCTGGCCACA  625

seq1  TTCTTTACAGATGTAGTTAGTTAAATCCCCAGGTGTGCTGCCTGGTGTTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACAGATGTAGTTAGTTAAATCCCCAGGTGTGCTGCCTGGTGTTC  675

seq1  ATAACCCAGCACCTGGGGGGCTAAGGCCGAAGGACTGCCATGAGGGCAAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCAGCACCTGGGGGGCTAAGGCCGAAGGACTGCCATGAGGGCAAG  725

seq1  GCCAGCCTGGGCTACATAATGAGATCCTGTCTCAAAACATGTACATATGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGGCTACATAATGAGATCCTGTCTCAAAACATGTACATATGT  775

seq1  GCACATGCGCGCACACAGTCTAAATCCTGCTAAAGTGAGATTCCTAAACT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCGCGCACACAGTCTAAATCCTGCTAAAGTGAGATTCCTAAACT  825

seq1  TCAGAAAGAGAATGGAAAAGAAAAGGAATGTTTTATTTCTTAGACTCAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGAGAATGGAAAAGAAAAGGAATGTTTTATTTCTTAGACTCAAT  875

seq1  ATTAGAAACTTCCAAGTCAAATAACTTTTCTGAGTACATTTTTTTTTCCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAACTTCCAAGTCAAATAACTTTTCTGAGTACATTTTTTTTTCCA  925

seq1  GCTGTGTGACACATTTAACACCTGGTATTGCAAAAAAAAAAAAAAAACTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGACACATTTAACACCTGGTATTGCAAAAAAAAAAAAAAAACTT  975

seq1  TTAGAATTTCTTGTAGACATTTTAGCTCTCTTACAGTTTTAAATCTAGTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTCTTGTAGACATTTTAGCTCTCTTACAGTTTTAAATCTAGTT  1025

seq1  TGTTTCTCATTCTGTTTTCCCTTTTTTAAAAAACAGTGTCTTCTTTCTGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCATTCTGTTTTCCCTTTTTTAAAAAACAGTGTCTTCTTTCTGA  1075

seq1  AATGTCTAACAGACATGGGGTCATGAAGTGATATTGGTGATGTCTTGTGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTAACAGACATGGGGTCATGAAGTGATATTGGTGATGTCTTGTGA  1125

seq1  GAGAGGGAGGTACTTAGGGGAGTCTAACACCTGGAGAATTC  1184
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAGGTACTTAGGGGAGTCTAACACCTGGAGAATTC  1166