BAC Information

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BAC

Clone NameB6Ng01-297F18
Chromosome12 (Build37)
Map Location 110,694,799 - 110,813,737
singlet/doubletdoublet
Overlap geneDlk1, Gtl2
Upstream geneEml1, Evl, Degs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194
Downstream geneRtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297F18.bB6Ng01-297F18.g
ACCGA092734GA092735
length8661,205
definitionB6Ng01-297F18.b B6Ng01-297F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,694,799 - 110,695,662)(110,812,533 - 110,813,737)
sequence
gaattcttcctcacagatccttccgcctgcatagcccctctccatcagat
tcatggttgtctgggtggaaatggcgggggtcaagggttgtcccaggggg
gaaatagcccctgggtaattgctggctctctcccttactgcctgcatggc
cacagctgcagttcaagcaaagaatccccttggtcctcttcatacagcac
ctgatttacacacacacacacacgcacgcacacacacacacacacacaca
catctttggggtgggaggctttaggggggaatgagcaggcatagtctggg
gatggcggtcgccagatctttatcttaaattcaagatcccaatcggcaag
agggcaagggccaggaagccccaaccagctgcacaggctctctgcactaa
cgttttttttttttttttttttgctggcgctatccccaaacctaaaccct
ctttatgttttcttgcaccacaccgggctcctgcaagtttttctgttgat
tgacacttgtctgcccttggtcagggtgcaaggtcctttgaaaaaggaga
gaaaaacacaccagtgttgccctaccaacatgaaacccttcctactggct
gccttcaatagctgtctctctgagctagccctagatatcgacgctgtgta
attatctgtgagccctagagaccagcgcatgtgagttgattgtgatgttg
tgtgtgctctctttgcttttatatagaaggaaactgacgctgcacagaat
gacttgcacactgctgagcagcaggctcagaccccttgcccccagcccct
ttgctcactcactctggattgtcgagcctgaataatgaagtggtcccgac
acggggttttaaaact
gaattccatgggccacaggaaagcactgccatctgccccctccaggatca
ggtcaagctttggacattatattcagccctgtcccaggaaagcctgtagt
ctccaagttttttcctcaattccagatatctgagtttttctcaaaaattt
aaatctgactttcagctctagaataccaaagaggtaaccttcttctggac
ggatgatccaaagtagatcgtcacaaaggtctccctttctggacacttca
atttcattagaggataaagatgggatctccactctataagaacagaggcc
tctctcttgacgaacctatctgagcgtcaccagagctgcatctttagaac
aatatggaagtctctctttctagacacctgagcttcattagatattgaaa
tgaaattctagatatagaatatgaagaaagtctctatttctagacaatca
aacttcactgaaaatgggctggatttctggcattagcatatttctggacc
tttgatcatcactggagactagaaatgcagaattgtagaacactataaag
aggtcttctgggtatctaagtttcagaaccttgaaccgggattctagctc
aaaaatgttaaggaggaccctctttctagacttctgtgcttctggcatct
gtgcttcatcagcaaatgaaaagtacagtctttgttctagaacatcgtaa
agggtcctctttctggataattgggcatcaaagattagaggtggagctta
gcttctgaacagagtggaggtcccctttctagatatctggacatcagaga
gtggggatggagtccaggttctagtacattgtgaaagttctttatggatg
tctgaacgtcatcaaaggctatagatggatagagttctgggtctataaca
tcattgagaatgctctttttctggacatctgtgcttcatcaaaggctgga
ggtagattcttaggtctggaacatcagagaggtccctctttcaggacatc
ttgagcttcatcaaaggctagaatagaggattctagatcttgtaacatca
gagaggcattctttctgacatctgagcttcattcgaaggctagaggaagg
ttcttagaattctggaactcaagagaggtcaatctttctgcatcctgact
atcaaggctgagagacggtctagatctggaacatcagaaagggcccattc
tttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_110694799_110695662
seq2: B6Ng01-297F18.b_48_912

seq1  GAATTCTTCCTCACAGATCCTTCCGCCTGCATAGCCCCTCTCCATCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTCACAGATCCTTCCGCCTGCATAGCCCCTCTCCATCAGAT  50

seq1  TCATGGTTGTCTGGGTGGAAATGGCGGGGGTCAAGGGTTGTCCCAGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTTGTCTGGGTGGAAATGGCGGGGGTCAAGGGTTGTCCCAGGGGG  100

seq1  GAAATAGCCCCTGGGTAATTGCTGGCTCTCTCCCTTACTGCCTGCATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGCCCCTGGGTAATTGCTGGCTCTCTCCCTTACTGCCTGCATGGC  150

seq1  CACAGCTGCAGTTCAAGCAAAGAATCCCCTTGGTCCTCTTCATACAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACAGCTGCAGTTCAAGCAAAGAATCCCCTTGGTCCTCTTCATACAGCAC  200

seq1  CTGATTTACACACACACACACACGCACGCACACACACACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTACACACACACACACACGCACGCACACACACACACACACACACA  250

seq1  CATCTTTGGGGTGGGAGGCTTTAGGGGGGAATGAGCAGGCATAGTCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGGGGTGGGAGGCTTTAGGGGGGAATGAGCAGGCATAGTCTGGG  300

seq1  GATGGTGGTCGCCAGATCTTTATCTTAAATTCAAGATCCCAATCGGCAAG  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCGGTCGCCAGATCTTTATCTTAAATTCAAGATCCCAATCGGCAAG  350

seq1  AGTGCAGGGGCCAGGAAGCCCCAGCCAGCTGCAGAGGCTCTCTGCACTAA  400
      || ||| |||||||||||||||| ||||||||| ||||||||||||||||
seq2  AGGGCAAGGGCCAGGAAGCCCCAACCAGCTGCACAGGCTCTCTGCACTAA  400

seq1  CGTTTTTTTTTTTTTTTTTTTTGCTGGCGCTATCCCAGAAAGATAAACCC  450
      ||||||||||||||||||||||||||||||||||||  |||  |||||||
seq2  CGTTTTTTTTTTTTTTTTTTTTGCTGGCGCTATCCC-CAAACCTAAACCC  449

seq1  TCTTTATGTTTTCTTGCACCACACCGGGCTCCTGCAGGTTTTTCTGTTGA  500
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTTTATGTTTTCTTGCACCACACCGGGCTCCTGCAAGTTTTTCTGTTGA  499

seq1  TTGACACTTGTCTCCCCTCAGTCAGGGTGCAAGGTCCTTTGAAAAAGGAG  550
      ||||||||||||| ||||  ||||||||||||||||||||||||||||||
seq2  TTGACACTTGTCTGCCCTTGGTCAGGGTGCAAGGTCCTTTGAAAAAGGAG  549

seq1  AGAAAAA-TCATCATGTGTTGCCTTAGCACCAGGAAACCCTTCCTGGGGG  599
      |||||||  || || |||||||| || || || ||||||||||||   ||
seq2  AGAAAAACACACCA-GTGTTGCCCTACCAACATGAAACCCTTCCTACTGG  598

seq1  CTGCCTTCACTAGCTGTCTCTCTG-GCTAGCCCTGGCTTTCTACAGCT-C  647
      ||||||||| |||||||||||||| ||||||||| | | || || |||  
seq2  CTGCCTTCAATAGCTGTCTCTCTGAGCTAGCCCTAGATATCGAC-GCTGT  647

seq1  AAAATTATAGAAAACCCCTAGAGACCAGC-AAAAAGAGTTGTTTGT-TTG  695
        ||||||     | ||||||||||||||  |   |||||| ||||  ||
seq2  GTAATTATCTGTGAGCCCTAGAGACCAGCGCATGTGAGTTGATTGTGATG  697

seq1  TT-TGTTTGTTTTCTTTGCTTTTATATGGAGGGAAACTGAGGCAGAGCAG  744
      || ||| || | ||||||||||||||| || ||||||||| || |  || 
seq2  TTGTGTGTGCTCTCTTTGCTTTTATATAGAAGGAAACTGACGCTGCACA-  746

seq1  GAAGGAGCTGAACTCTGCGGAGCAGCAGTCAGAGACCCCTTGCCCCCAGC  794
      ||| ||  || || |||| ||||||||| |  ||||||||||||||||||
seq2  GAATGACTTGCACACTGCTGAGCAGCAGGCTCAGACCCCTTGCCCCCAGC  796

seq1  CCCTTTGTTCAGCTCATCCTGGCTTGCTGAGCCTGAATAATGAAGTGGTC  844
      ||||||| ||| ||||  |||| |||  ||||||||||||||||||||||
seq2  CCCTTTGCTCA-CTCACTCTGGATTGTCGAGCCTGAATAATGAAGTGGTC  845

seq1  CTGACAGGGGGTATTAAAAC  864
      | |||| ||||| |||||||
seq2  CCGACACGGGGTTTTAAAAC  865

seq1: chr12_110812533_110813737
seq2: B6Ng01-297F18.g_67_1271 (reverse)

seq1  AGAAAGA--TGGCCCTCTCTGATGTTCCAGATCTAGGACCCTCTCTCTAG  48
      |||||||   |||||| |||||||||||||||||| |||| |||||| ||
seq2  AGAAAGAATGGGCCCTTTCTGATGTTCCAGATCTA-GACCGTCTCTC-AG  48

seq1  CCTTTGATGAAGCTCA-GATGTCCAGAAAGATGGCCCTCTCTGATGTTCC  97
      || |||||  || ||| ||||  ||||||||| | |||||||   |||||
seq2  CC-TTGAT--AG-TCAGGATG--CAGAAAGATTGACCTCTCTTGAGTTCC  92

seq1  AGA--TCTAGGACCCTCTCTCTAGCCTTTG-ATGAAGCTCAGATGTCCAG  144
      |||  |||| || |||  |||||||||| | ||||||||||||||| |||
seq2  AGAATTCTAAGAACCTTCCTCTAGCCTTCGAATGAAGCTCAGATGT-CAG  141

seq1  AAAGATGGCCCTCTCTGATGTT-CCAGATCTAGGACCCTCTA-TCTAGCC  192
      |||||  | ||||||||||||| | |||||||| | |||||| |||||||
seq2  AAAGAATG-CCTCTCTGATGTTACAAGATCTAGAATCCTCTATTCTAGCC  190

seq1  TTTGATGAAGCTC-AGATGTCCTGAAAGAGGGACCTCTCTGATGTTCCAG  241
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTGATGAAGCTCAAGATGTCCTGAAAGAGGGACCTCTCTGATGTTCCAG  240

seq1  ACCTAAGAATCTACCTCCAGCCTTTGATGAAGCACAGATGTCCAG-AAAA  290
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACCTAAGAATCTACCTCCAGCCTTTGATGAAGCACAGATGTCCAGAAAAA  290

seq1  GAGCATTCTCAATGATGTTATAGACCCAGAACTCTATCCATCTATAGCCT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTCTCAATGATGTTATAGACCCAGAACTCTATCCATCTATAGCCT  340

seq1  TTGATGACGTTCAGACATCCATAAAGAACTTTCACAATGTACTAGAACCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGACGTTCAGACATCCATAAAGAACTTTCACAATGTACTAGAACCT  390

seq1  GGACTCCATCCCCACTCTCTGATGTCCAGATATCTAGAAAGGGGACCTCC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCATCCCCACTCTCTGATGTCCAGATATCTAGAAAGGGGACCTCC  440

seq1  ACTCTGTTCAGAAGCTAAGCTCCACCTCTAATCTTTGATGCCCAATTATC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTTCAGAAGCTAAGCTCCACCTCTAATCTTTGATGCCCAATTATC  490

seq1  CAGAAAGAGGACCCTTTACGATGTTCTAGAACAAAGACTGTACTTTTCAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAGGACCCTTTACGATGTTCTAGAACAAAGACTGTACTTTTCAT  540

seq1  TTGCTGATGAAGCACAGATGCCAGAAGCACAGAAGTCTAGAAAGAGGGTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATGAAGCACAGATGCCAGAAGCACAGAAGTCTAGAAAGAGGGTC  590

seq1  CTCCTTAACATTTTTGAGCTAGAATCCCGGTTCAAGGTTCTGAAACTTAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAACATTTTTGAGCTAGAATCCCGGTTCAAGGTTCTGAAACTTAG  640

seq1  ATACCCAGAAGACCTCTTTATAGTGTTCTACAATTCTGCATTTCTAGTCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAGAAGACCTCTTTATAGTGTTCTACAATTCTGCATTTCTAGTCT  690

seq1  CCAGTGATGATCAAAGGTCCAGAAATATGCTAATGCCAGAAATCCAGCCC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATGATCAAAGGTCCAGAAATATGCTAATGCCAGAAATCCAGCCC  740

seq1  ATTTTCAGTGAAGTTTGATTGTCTAGAAATAGAGACTTTCTTCATATTCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGTGAAGTTTGATTGTCTAGAAATAGAGACTTTCTTCATATTCT  790

seq1  ATATCTAGAATTTCATTTCAATATCTAATGAAGCTCAGGTGTCTAGAAAG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAGAATTTCATTTCAATATCTAATGAAGCTCAGGTGTCTAGAAAG  840

seq1  AGAGACTTCCATATTGTTCTAAAGATGCAGCTCTGGTGACGCTCAGATAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTCCATATTGTTCTAAAGATGCAGCTCTGGTGACGCTCAGATAG  890

seq1  GTTCGTCAAGAGAGAGGCCTCTGTTCTTATAGAGTGGAGATCCCATCTTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTCAAGAGAGAGGCCTCTGTTCTTATAGAGTGGAGATCCCATCTTT  940

seq1  ATCCTCTAATGAAATTGAAGTGTCCAGAAAGGGAGACCTTTGTGACGATC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTAATGAAATTGAAGTGTCCAGAAAGGGAGACCTTTGTGACGATC  990

seq1  TACTTTGGATCATCCGTCCAGAAGAAGGTTACCTCTTTGGTATTCTAGAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGGATCATCCGTCCAGAAGAAGGTTACCTCTTTGGTATTCTAGAG  1040

seq1  CTGAAAGTCAGATTTAAATTTTTGAGAAAAACTCAGATATCTGGAATTGA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTCAGATTTAAATTTTTGAGAAAAACTCAGATATCTGGAATTGA  1090

seq1  GGAAAAAACTTGGAGACTACAGGCTTTCCTGGGACAGGGCTGAATATAAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAACTTGGAGACTACAGGCTTTCCTGGGACAGGGCTGAATATAAT  1140

seq1  GTCCAAAGCTTGACCTGATCCTGGAGGGGGCAGATGGCAGTGCTTTCCTG  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAGCTTGACCTGATCCTGGAGGGGGCAGATGGCAGTGCTTTCCTG  1190

seq1  TGGCCCATGGAATTC  1205
      |||||||||||||||
seq2  TGGCCCATGGAATTC  1205