BAC Information

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BAC

Clone NameB6Ng01-297L07
Chromosome12 (Build37)
Map Location 14,228,574 - 14,383,971
singlet/doubletdoublet
Overlap genenone
Upstream geneDdx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
Downstream geneLOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297L07.bB6Ng01-297L07.g
ACCGA093000GA093001
length1,2131,180
definitionB6Ng01-297L07.b B6Ng01-297L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,228,574 - 14,229,795)(14,382,794 - 14,383,971)
sequence
gaattccttctgttcgaaggaatagttcggttttatggatggctcttttg
tagaaatacaggttttatattcctagagctggaatcatcctggagatttt
catgagttgtctctctccttctaagagaagaggacactaaagtctaaccc
tattaaataacttaatcaagataagactgcaagctaatgattgaatggtt
tttccctttatatttattttttaatgtaaattttactttaaaatataatt
tcatcatttctcacctctttcatctagctccatgcttcccccttctccct
ttcaaattcatggactcattttcttcaattattattattttacacataca
taaatgcatatgcacgcacacatgtaagtatataaatacaatctactaag
tctttttaatataatttgtatgtatgcttttagggctagctgttttgata
tcgtataaacttttagggttcatccctggaaaggaataattcttccattc
tcaaggtcttttattacctgttactctttctctggggggaggggccccgt
gagactctccctatctatattggcatgctaagtgatattgtcattgttta
ggttctgtttaaacagctgttttgctgagatatttttatttagcttcact
gtcatatctgcaagagaacctttgagcagacttcttggtcctgttgatct
taccatctttctaaaccctcttctactatgctccctgagtttttgacata
gctgttgtgtcgtagaatgtatcagctgcagccaggcacctcatacacac
tcagtcctctgcatttgaccagtaattgttttctataattgtcttgcttt
ctgatctgttttatcatataccttaaaactagccatgcttctatagcagg
aagtaagtcactgatccctatatatgtaagattaaattgctcttttggct
atctttcatttggaacactagcatttaacagctgatcttgtcatgctctg
tagcctttcttcaaatcgtaatgttcagagacacttaggagtgttgtcct
taacatctttcagaatatagccattctgtgggtgacatttctggagagtt
aaacatgttatctctttaccaagccagtggccaacagtgtgagtcagaac
agctcttacctgttctcttaccgtcaattaaccaaaggcgtgtcaaaacc
taggggttaccac

gaattctatctggcaacatagatgaggaataaaggacaaatacccaccac
atgttctcacttgtgtttggaactaactggtctcagaagatcatgggata
atggtcactaggaattggaaaggggtaagatacaaaaggcaggcaaattc
tctctggtgtgtcacgggtcactagaatggtgtgtcacaggacactagaa
tagtgtgtttcaagatagccaggaaaatctaaagctacccaacacagaat
tggttgaggtttcagatggaaatgctaattatcttgatctgatcattaga
cagtcaataaatatatggaattttatataaatattgtatcaatatgaaca
ccgatcattgagaaacatgagtacttgctgggctccagttcctctttgtc
tcaataaagtaagaaactgtgtcagaggacagcttattaggagggggcag
gggatatgtacaccccaatgagaatactcaggtgggcccaaatggtggta
tgttattgactggggcaagaacactgagggtgtttcatttgcatactcaa
gggtagcaggggccagaaaaatgaatcttttaagttcatagcgaaagaaa
acccagccatggatttctcaggctcagaggtcagataaagagtcaccagt
catcatgaccctgtagatgcatgggtttatgcaaaggagcatattggcat
ccaagatagcctatctgttgggatctgttggcaccagagcaaggacaggg
tggggtgactcaggatgagaggttttaggcattctttgatctgttctcgg
ctccgggccagccccacaagtattattctaatcaaaactgtcctaaactg
tgttattattggtgtcttcacgccactgagatttgcacgcagaaagtaag
tgatgccctcgatactgtcacctatgatgatatgagaaagcaactctggg
cagaaaagttgaactgcagtgaagttgtctcacctcaggttacagctaac
caccatagaatcctagatgccctggcactgtgggtagaacgcccagcata
gcaccctcaatccattatttaaccagcccttgcgtacgttaccacacggt
agtggttaatggctagatcatagagactgattgcagcccaggattcaggc
ttaccggcttcccattggcagcatggcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_14228574_14229795
seq2: B6Ng01-297L07.b_46_1258

seq1  GAATTCCTTCTGTTCGAAGGAATAGTTCGGTTTTATGGATGGCTCTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTGTTCGAAGGAATAGTTCGGTTTTATGGATGGCTCTTTTG  50

seq1  TAGAAATACAGGTTTTATATTCCTAGAGCTGGAATCATCCTGGAGATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATACAGGTTTTATATTCCTAGAGCTGGAATCATCCTGGAGATTTT  100

seq1  CATGAGTTGTCTCTCTCCTTCTAAGAGAAGAGGACACTAAAGTCTAACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTGTCTCTCTCCTTCTAAGAGAAGAGGACACTAAAGTCTAACCC  150

seq1  TATTAAATAACTTAATCAAGATAAGACTGCAAGCTAATGATTGAATGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATAACTTAATCAAGATAAGACTGCAAGCTAATGATTGAATGGTT  200

seq1  TTTCCCTTTATATTTATTTTTTAATGTAAATTTTACTTTAAAATATAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTATATTTATTTTTTAATGTAAATTTTACTTTAAAATATAATT  250

seq1  TCATCATTTCTCACCTCTTTCATCTAGCTCCATGCTTCCCCCTTCTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTTCTCACCTCTTTCATCTAGCTCCATGCTTCCCCCTTCTCCCT  300

seq1  TTCAAATTCATGGACTCATTTTCTTCAATTATTATTATTTTACACATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTCATGGACTCATTTTCTTCAATTATTATTATTTTACACATACA  350

seq1  TAAATGCATATGCACGCACACATGTAAGTATATAAATACAATCTACTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCATATGCACGCACACATGTAAGTATATAAATACAATCTACTAAG  400

seq1  TCTTTTTAATATAATTTGTATGTATGCTTTTAGGGCTAGCTGTTTTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAATATAATTTGTATGTATGCTTTTAGGGCTAGCTGTTTTGATA  450

seq1  TCGTATAAACTTTTAGGGTTCATCCCTGGAAAGGAATAATTCTTCCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATAAACTTTTAGGGTTCATCCCTGGAAAGGAATAATTCTTCCATTC  500

seq1  TCAAGGTCTTTTATTACCTGTTACTCTTTCTCTGGGGGGAGGGGCCCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTCTTTTATTACCTGTTACTCTTTCTCTGGGGGGAGGGGCCCCGT  550

seq1  GAGACTCTCCCTATCTATATTGGCATGCTAAGTGATATTGTCATTGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTCCCTATCTATATTGGCATGCTAAGTGATATTGTCATTGTTTA  600

seq1  GGTTCTGTTTAAACAGCTGTTTTGCTGAGATATTTTTATTTAGCTTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTTTAAACAGCTGTTTTGCTGAGATATTTTTATTTAGCTTCACT  650

seq1  GTCATATCTGCAAGAGAACCTTTGAGCAGACTTCTTGGTCCTGTTGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATCTGCAAGAGAACCTTTGAGCAGACTTCTTGGTCCTGTTGATCT  700

seq1  TACCATCTTTCTAAACCCTCTTCTACTATGCTCCCTGAGTTTTTGACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCTTTCTAAACCCTCTTCTACTATGCTCCCTGAGTTTTTGACATA  750

seq1  GCTGTTGTGTCGTAGAATGTATCAGCTGCAGCCAGGCACCTCATACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGTGTCGTAGAATGTATCAGCTGCAGCCAGGCACCTCATACACAC  800

seq1  TCAGTCCTCTGCATTTGACCAGTAATTGTTTTCTATAATTGTCTTGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTCTGCATTTGACCAGTAATTGTTTTCTATAATTGTCTTGCTTT  850

seq1  CTGATCTGTTTTATCATATACCTTAAAACTAGCCATGCTTCTATAGCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTGTTTTATCATATACCTTAAAACTAGCCATGCTTCTATAGCAGG  900

seq1  AAGTAAGTCACTGATCCCTATATATGTAAGATTAAATTGCTCTTTTGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGTCACTGATCCCTATATATGTAAGATTAAATTGCTCTTTTGGCT  950

seq1  ATCTTTCATTTGGAACACTAGCATTTAACAGCTGATCTTGTCATGCTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCATTTGGAACACTAGCATTTAACAGCTGATCTTGTCATGCTCTG  1000

seq1  TAGCCTTTCTTCAAATCGTAATG-TCAGAGGACAACTTAAGAGTGTTGTC  1049
      ||||||||||||||||||||||| ||||| ||| ||||| ||||||||||
seq2  TAGCCTTTCTTCAAATCGTAATGTTCAGA-GAC-ACTTAGGAGTGTTGTC  1048

seq1  CTTAACATCTTTCAGAATATAGCCATTCTGTGGGTGACATTTCTGGAGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACATCTTTCAGAATATAGCCATTCTGTGGGTGACATTTCTGGAGAG  1098

seq1  -TAAACATGGTAATCCTCTTTACCAAGCCCAGTGGCAAACAGTGTGAGTC  1148
       |||||||| ||   |||||||||||| |||||||| |||||||||||||
seq2  TTAAACATGTTA--TCTCTTTACCAAG-CCAGTGGCCAACAGTGTGAGTC  1145

seq1  AGGACAGGCTCTAACTTGTTCTTCCTTACTGTCATTTTAAACACAATAGG  1198
      || ||| ||||| || ||||||  ||||| |||| ||  ||| ||| |||
seq2  AGAACA-GCTCTTACCTGTTCT--CTTACCGTCAATT--AAC-CAA-AGG  1188

seq1  CTGTGTCAAAA-CTA-GTGTTACCAC  1222
      | ||||||||| ||| | ||||||||
seq2  C-GTGTCAAAACCTAGGGGTTACCAC  1213


seq1: chr12_14382794_14383971
seq2: B6Ng01-297L07.g_67_1246 (reverse)

seq1  TCTGCCATGCTGACCAGTGAGAGCACGGGTAGACTTTGATCCT-GGCTGC  49
      |||||||||||| ||| || ||   | ||||  | |  ||||| ||||||
seq2  TCTGCCATGCTG-CCAATGGGA-AGCCGGTAAGCCTGAATCCTGGGCTGC  48

seq1  AATCAG-CTCTATGGTCTAG-CATTAACCACCTCCCGTGTGTGTACCCTA  97
      |||||| ||||||| ||||| ||||||||| || ||||||| ||| | ||
seq2  AATCAGTCTCTATGATCTAGCCATTAACCA-CTACCGTGTG-GTAACGTA  96

seq1  CACCAAGGGCTGG-TAAAT-ATGGGATGA-GGTGCTATGCTTGGCGTTCT  144
      |  |||||||||| ||||| ||||  ||| ||||||||||| ||||||||
seq2  C-GCAAGGGCTGGTTAAATAATGGATTGAGGGTGCTATGCTGGGCGTTCT  145

seq1  ACCCACAGTGCCAGGGCATCTA-GATTCTTATGTGGTTAGCTGTAACCTG  193
      |||||||||||||||||||||| ||||||   ||||||||||||||||||
seq2  ACCCACAGTGCCAGGGCATCTAGGATTCTATGGTGGTTAGCTGTAACCTG  195

seq1  TGGTGAGACAACTTCACTGCAGTTCAACTTTTCTGCCCAGAGTTGCTTTC  243
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGACAACTTCACTGCAGTTCAACTTTTCTGCCCAGAGTTGCTTTC  245

seq1  TCATATCATCATAGGTGACAGTATCGAGGGCATCACTTACCTTCTGCGTG  293
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCATATCATCATAGGTGACAGTATCGAGGGCATCACTTACTTTCTGCGTG  295

seq1  CAAATCTCAGTGGCGTGAAGACACCAATAATAACACAGTTTAGGACAGTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTCAGTGGCGTGAAGACACCAATAATAACACAGTTTAGGACAGTT  345

seq1  TTGATTAGAATAATACTTGTGGGGCTGGCCCGGAGCCGAGAACAGATCAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAGAATAATACTTGTGGGGCTGGCCCGGAGCCGAGAACAGATCAA  395

seq1  AGAATGCCTAAAACCTCTCATCCTGAGTCACCCCACCCTGTCCTTGCTCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCCTAAAACCTCTCATCCTGAGTCACCCCACCCTGTCCTTGCTCT  445

seq1  GGTGCCAACAGATCCCAACAGATAGGCTATCTTGGATGCCAATATGCTCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAACAGATCCCAACAGATAGGCTATCTTGGATGCCAATATGCTCC  495

seq1  TTTGCATAAACCCATGCATCTACAGGGTCATGATGACTGGTGACTCTTTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATAAACCCATGCATCTACAGGGTCATGATGACTGGTGACTCTTTA  545

seq1  TCTGACCTCTGAGCCTGAGAAATCCATGGCTGGGTTTTCTTTCGCTATGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTCTGAGCCTGAGAAATCCATGGCTGGGTTTTCTTTCGCTATGA  595

seq1  ACTTAAAAGATTCATTTTTCTGGCCCCTGCTACCCTTGAGTATGCAAATG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAAGATTCATTTTTCTGGCCCCTGCTACCCTTGAGTATGCAAATG  645

seq1  AAACACCCTCAGTGTTCTTGCCCCAGTCAATAACATACCACCATTTGGGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCCTCAGTGTTCTTGCCCCAGTCAATAACATACCACCATTTGGGC  695

seq1  CCACCTGAGTATTCTCATTGGGGTGTACATATCCCCTGCCCCCTCCTAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGAGTATTCTCATTGGGGTGTACATATCCCCTGCCCCCTCCTAAT  745

seq1  AAGCTGTCCTCTGACACAGTTTCTTACTTTATTGAGACAAAGAGGAACTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTCCTCTGACACAGTTTCTTACTTTATTGAGACAAAGAGGAACTG  795

seq1  GAGCCCAGCAAGTACTCATGTTTCTCAATGATCGGTGTTCATATTGATAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGCAAGTACTCATGTTTCTCAATGATCGGTGTTCATATTGATAC  845

seq1  AATATTTATATAAAATTCCATATATTTATTGACTGTCTAATGATCAGATC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATATAAAATTCCATATATTTATTGACTGTCTAATGATCAGATC  895

seq1  AAGATAATTAGCATTTCCATCTGAAACCTCAACCAATTCTGTGTTGGGTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATTAGCATTTCCATCTGAAACCTCAACCAATTCTGTGTTGGGTA  945

seq1  GCTTTAGATTTTCCTGGCTATCTTGAAACACACTATTCTAGTGTCCTGTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGATTTTCCTGGCTATCTTGAAACACACTATTCTAGTGTCCTGTG  995

seq1  ACACACCATTCTAGTGACCCGTGACACACCAGAGAGAATTTGCCTGCCTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCATTCTAGTGACCCGTGACACACCAGAGAGAATTTGCCTGCCTT  1045

seq1  TTGTATCTTACCCCTTTCCAATTCCTAGTGACCATTATCCCATGATCTTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTTACCCCTTTCCAATTCCTAGTGACCATTATCCCATGATCTTC  1095

seq1  TGAGACCAGTTAGTTCCAAACACAAGTGAGAACATGTGGTGGGTATTTGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCAGTTAGTTCCAAACACAAGTGAGAACATGTGGTGGGTATTTGT  1145

seq1  CCTTTATTCCTCATCTATGTTGCCAGATAGAATTC  1178
      |||||||||||||||||||||||||||||||||||
seq2  CCTTTATTCCTCATCTATGTTGCCAGATAGAATTC  1180


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