BAC Information

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BAC

Clone NameB6Ng01-301H17
Chromosome12 (Build37)
Map Location 34,812,956 - 34,906,774
singlet/doubletdoublet
Overlap genenone
Upstream geneAtxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301H17.bB6Ng01-301H17.g
ACCGA095782GA095783
length4411,146
definitionB6Ng01-301H17.b B6Ng01-301H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,812,956 - 34,813,402)(34,905,607 - 34,906,774)
sequence
caactctttcattaacaccattgttatctaatacatattcttcactactc
atttttcttctacaagtagaaataaaaattcagtattacattgaatttct
gatcacagcacctacagatagctctatgcaaggacatagtgaatgccagt
gaatatcagggaaaagcctgattgcttctatccctctgtcagtctcccct
gttcttattacctatgggtagttcatgactcaaaagccagctctggctgg
gaatcttagctcatgctcatcatcccagctctgggatgggatcgctgcaa
gtttgaggctagtctgggctgtggagagtgctttaagaaggtcttagaat
agaataaaaaattgtacaaaaattaaaaagaaaaatcctagactctaaaa
tgctaaagaggaaggggagggaaggagggagatagggaagg

gaattctttataaaattccagaacttgggctagaaattgacttagagaat
ccaataaactcgcaagccttggacaacatccaagctgaatttatagactg
gaagaaatatgggctttccattgttctccttttcacctttccgggggttt
cttttgtgtctatgtgcgtgtgcgagtgtaaatttatcattttgctgaca
ctggagtggaaataaccatcgaggggaccaaggtcaggaattttcacttt
ggatctttcctggtctttctgaactttgacccaaacctgcaccaagagtg
aatttcttctctctgtatgatgttgatcttagaaaacaagaggttgttct
tgcaaatgaatggcacgagtctaacagctgagatgaatgtcggtcagccc
tgtgcaacttccaactccctgttccttctctgcctcagtatgggcctata
tgatgcatgatctgagtcacgtgatcctctattttgtctcagttgcgaca
gggtgataagggcaaggaaacgaacttgggtgtgtctgaaagacatcaga
cttctttgtgtgtctgggatgctatcaacacaggcgctgtagtgatctga
acggtatctttctttgcccatgctattgaaaacctatcttgtgcttacag
aatgggtttgccgttgtgaggcccccaggccatcatgcggaagagtctgc
agccatgtaagtaccggggcccactgccatcttcaagtgccatggttcct
ggcagtcacctgccccgtgcatgtttctgaagcctctaattgtttgcaga
tggactgaaaactctcgcgaggtactcccagaagcagatttatggcttca
gagatcatatagcatttaaaaaaaatgctctgaacattatttataatggg
ttttcctggatgatttgccttcttattctctgttcttctctatccgcagg
ggttctgctttttttattcagttgcattaccgccaaatacttgagagaca
ctaatatagcagatatgatgtagatctgtatgtatgcctgacaggctgca
tttcagtgactctagataaagggaatagatggttgctctctgtacggatg
acttgcctagccctggcaacactgagggtgtgttacttggaatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34812956_34813402
seq2: B6Ng01-301H17.b_44_490

seq1  GAATTCCAACTCTTTCATTAACACCATTGTTATCTAATACATATTCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTCTTTCATTAACACCATTGTTATCTAATACATATTCTTCA  50

seq1  CTACTCATTTTTCTTCTACAAGTAGAAATAAAAATTCAGTATTACATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCATTTTTCTTCTACAAGTAGAAATAAAAATTCAGTATTACATTGA  100

seq1  ATTTCTGATCACAGCACCTACAGATAGCTCTATGCAAGGACATAGTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGATCACAGCACCTACAGATAGCTCTATGCAAGGACATAGTGAAT  150

seq1  GCCAGTGAATATCAGGGAAAAGCCTGATTGCTTCTATCCCTCTGTCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGAATATCAGGGAAAAGCCTGATTGCTTCTATCCCTCTGTCAGTC  200

seq1  TCCCCTGTTCTTATTACCTATGGGTAGTTCATGACTCAAAAGCCAGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTTCTTATTACCTATGGGTAGTTCATGACTCAAAAGCCAGCTCT  250

seq1  GGCTGGGAATCTTAGCTCATGCTCATCATCCCAGCTCTGGGATGGGATCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGAATCTTAGCTCATGCTCATCATCCCAGCTCTGGGATGGGATCG  300

seq1  CTGCAAGTTTGAGGCTAGTCTGGGCTGTGGAGAGTGCTTTAAGAAGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGTTTGAGGCTAGTCTGGGCTGTGGAGAGTGCTTTAAGAAGGTCT  350

seq1  TAGAATAGAATAAAAAATTGTACAAAAATTAAAAAGAAAAATCCTAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAGAATAAAAAATTGTACAAAAATTAAAAAGAAAAATCCTAGACT  400

seq1  CTAAAATGCTAAAGAGGAAGGGGAGGGAAGGAGGGAGATAGGGAAGG  447
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGCTAAAGAGGAAGGGGAGGGAAGGAGGGAGATAGGGAAGG  447


seq1: chr12_34905607_34906774
seq2: B6Ng01-301H17.g_68_1213 (reverse)

seq1  CACATTCAAAGGAAACACACCCTTCAGTTGTTTGCAAGTGCTAAAAGCAA  50
      ||||||| || | ||||||||| |||||   |||| || |||  | ||||
seq2  CACATTCCAA-GTAACACACCC-TCAGT--GTTGCCAGGGCT--AGGCAA  44

seq1  GACAACCGTACAGAGAAACACACATCTATTCCCTTTTATCTAGAGTCACT  100
      | || |||||||||| | ||  ||||||||||| ||||||||||||||||
seq2  GTCATCCGTACAGAG-AGCAACCATCTATTCCC-TTTATCTAGAGTCACT  92

seq1  GAAAATGCAGCCCTGGCCAGGCATACATACCAGATCTACAATCAATATCT  150
      | ||||||||||   | |||||||||||| ||||||||| ||| ||||| 
seq2  G-AAATGCAGCC--TGTCAGGCATACATA-CAGATCTAC-ATC-ATATC-  135

seq1  TGCTTATATTTAGTTGGTCTCTCAAGTATTTGGCGGTAATTGCAACTGAA  200
      ||| |||| |||||  ||||||||||||||||||||||| ||||||||||
seq2  TGC-TATA-TTAGT--GTCTCTCAAGTATTTGGCGGTAA-TGCAACTGAA  180

seq1  TTAAAAAAGCAGAACCCCCTGCGGAATAGAGAAGAACAGAGAAATAAGAA  250
      | |||||||||||| ||||||||| |||||||||||||||| ||||||||
seq2  TAAAAAAAGCAGAA-CCCCTGCGG-ATAGAGAAGAACAGAG-AATAAGAA  227

seq1  GGCAAATCATCCAGGAAAA-CCATTATAAATAATGTTCAGAGCATTTTTT  299
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGCAAATCATCCAGGAAAACCCATTATAAATAATGTTCAGAGCATTTTTT  277

seq1  TTAAATGCTATATGATCTCTGAAGCCATAAATCTGCTTCTGGGAGTACCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCTATATGATCTCTGAAGCCATAAATCTGCTTCTGGGAGTACCT  327

seq1  CGCGAGAGTTTTCAGTCCATCTGCAAACAATTAGAGGCTTCAGAAACATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAGAGTTTTCAGTCCATCTGCAAACAATTAGAGGCTTCAGAAACATG  377

seq1  CACGGGGCAGGTGACTGCCAGGAACCATGGCACTTGAAGATGGCAGTGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGGCAGGTGACTGCCAGGAACCATGGCACTTGAAGATGGCAGTGGG  427

seq1  CCCCGGTACTTACATGGCTGCAGACTCTTCCGCATGATGGCCTGGGGGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGTACTTACATGGCTGCAGACTCTTCCGCATGATGGCCTGGGGGCC  477

seq1  TCACAACGGCAAACCCATTCTGTAAGCACAAGATAGGTTTTCAATAGCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACGGCAAACCCATTCTGTAAGCACAAGATAGGTTTTCAATAGCAT  527

seq1  GGGCAAAGAAAGATACCGTTCAGATCACTACAGCGCCTGTGTTGATAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGAAAGATACCGTTCAGATCACTACAGCGCCTGTGTTGATAGCA  577

seq1  TCCCAGACACACAAAGAAGTCTGATGTCTTTCAGACACACCCAAGTTCGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACACACAAAGAAGTCTGATGTCTTTCAGACACACCCAAGTTCGT  627

seq1  TTCCTTGCCCTTATCACCCTGTCGCAACTGAGACAAAATAGAGGATCACG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCCCTTATCACCCTGTCGCAACTGAGACAAAATAGAGGATCACG  677

seq1  TGACTCAGATCATGCATCATATAGGCCCATACTGAGGCAGAGAAGGAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGATCATGCATCATATAGGCCCATACTGAGGCAGAGAAGGAACA  727

seq1  GGGAGTTGGAAGTTGCACAGGGCTGACCGACATTCATCTCAGCTGTTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGGAAGTTGCACAGGGCTGACCGACATTCATCTCAGCTGTTAGA  777

seq1  CTCGTGCCATTCATTTGCAAGAACAACCTCTTGTTTTCTAAGATCAACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGCCATTCATTTGCAAGAACAACCTCTTGTTTTCTAAGATCAACAT  827

seq1  CATACAGAGAGAAGAAATTCACTCTTGGTGCAGGTTTGGGTCAAAGTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGAGAGAAGAAATTCACTCTTGGTGCAGGTTTGGGTCAAAGTTCA  877

seq1  GAAAGACCAGGAAAGATCCAAAGTGAAAATTCCTGACCTTGGTCCCCTCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACCAGGAAAGATCCAAAGTGAAAATTCCTGACCTTGGTCCCCTCG  927

seq1  ATGGTTATTTCCACTCCAGTGTCAGCAAAATGATAAATTTACACTCGCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTATTTCCACTCCAGTGTCAGCAAAATGATAAATTTACACTCGCAC  977

seq1  ACGCACATAGACACAAAAGAAACCCCCGGAAAGGTGAAAAGGAGAACAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACATAGACACAAAAGAAACCCCCGGAAAGGTGAAAAGGAGAACAAT  1027

seq1  GGAAAGCCCATATTTCTTCCAGTCTATAAATTCAGCTTGGATGTTGTCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCCCATATTTCTTCCAGTCTATAAATTCAGCTTGGATGTTGTCCA  1077

seq1  AGGCTTGCGAGTTTATTGGATTCTCTAAGTCAATTTCTAGCCCAAGTTCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGCGAGTTTATTGGATTCTCTAAGTCAATTTCTAGCCCAAGTTCT  1127

seq1  GGAATTTTATAAAGAATTC  1168
      |||||||||||||||||||
seq2  GGAATTTTATAAAGAATTC  1146


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