BAC Information

Click to search

BAC

Clone NameB6Ng01-304M09
Chromosome12 (Build37)
Map Location 20,625,417 - 20,626,542
singlet/doubletsinglet
Overlap geneLOC100043377
Upstream geneEG668588, LOC100042706, EG668594, EG668600, LOC100042727, LOC673301, EG668605, LOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755
Downstream geneLOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752, EG629257, Ddef2, Itgb1bp1, Cpsf3, Iah1, Adam17, Ywhaq, LOC100043407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304M09.bB6Ng01-304M09.g
ACCGA098240GA098241
length1,1261,179
definitionB6Ng01-304M09.b B6Ng01-304M09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtttctcttttatgattagtagtgcagttactatgataccact
ccttgtgcatcccagctcttgctgtggttcatttgggacctgctgctgtg
tgttaggtgaagggattagacatctcttctctttgaaagaatctgtggtt
ccgtggggagaaaccgattctccaggcagatcagtgacgtgaggtcatgt
ctgcgagagcatctatggtgatgatgtagagaacaggaagactggaccac
ttacatgtgatcagagcatctgtggtgatgatgtagagaacaggaagact
gggaccacttacatgtgatcagggatgtggatgaaagggccttgaatgga
agcctggtgtaagaggctccaaggtggtttaatccagtcttccatatctg
tgtccctaccttagagaaatatttatccactcttgggttggtgatcaact
aggcctttggtggaatttccctatccatccagactgcagaaggctcctta
ggccaagaatttacagaggcctttcatggtggggaactgcacttctggct
tttggtcagcattgtagcccaagaatgaagtcagctctttgctaacatta
ctctgtctcagatgcttggtggccacatgggttggtggccactctgttgt
gtgatgtagattcaggactttgttctccatacttgtaggaagtcttgttg
atgagcacagttttaggcccttgcaactgcaaaatgcttcacctgacagc
accagtcagtgtggtgtgcaacttgcagagcctcagttccatggcagagc
tgtggaaatagagtgtgcattttaatagcactctcaggagcagtgtgtgc
accagggtttgaaagtactgttgtaggctgcccagagtcctggctgtgtt
cagagttgcctggtgagggagggggtgtctgtggactggaagacctggtt
ctgctctcctgaattctgatttgatagatttgggtggaggcctgagcttt
tattatttgtaaaaggcttcctccctagtggatatcactgaatgacaagt
gggattacgtcatggtggtgccagtagtgatgatccaggttatgcatacc
ttggggattaggatgttgcgttttgg
gaattcttaattcttaattagcaccacagcagccttataataggatgtta
aaactttgaggtgaaaaaggatgattttacattaatgtttatttttgcca
aaaatagctgtggacacaattaataaaaataactagaatatgtaactaat
atttgattaccaccaattacaatcgataccaatagattacagaagtttct
tctactttctgttaaagcctttttggttctcaccagttaattggactatc
acttgatagcaccttaacaaaggcttaggttctcctgtggcgagtttaag
gtgaggtcttagccaattaacatatcctgtaagcttttggaaataaaatt
ttgaagtaaatttgtaccaatttttcagtatgactgaaaccctaattatt
aaaaaagatattgcttctgaatcttatgaagcaacaactatcccttagaa
ctttaaacttacctttagagacattagctaataaaatacttttcacttag
gaaacaatatatactgaaagatttaaaccttttgcttcttgtattgaagc
tgataataaaaatttcttacatattgttaagctatgttagtcatacctag
gggcaaaaacctttaatggtcaccagttcactagaagtaaactctttaca
aatggaaaaattaaacttttaaatctataataattctatatgaagtaagc
aagttattttgaaatgcctttataagttttatagcctgactgacctttta
taaacttttgaatttaaattttatttagaacaacatctggctaggtctgt
aataaggctctaagaagcgccacacaagccaagctgaggctgctcccctc
tgagctcagccttaacccaaatgcaaacttttttcaatctgaacactctg
ccagagtattgattcaaagattatccctatgttgaagtatccttaaagac
ctgttttcttgtgtttgttcatatgtttaagaaagaattctaaccttgag
ttccaattttaagcgaactttcttgtacaaggaaagactgtctgcccctt
tagagctctgcatcggctcttcagccagcctatcagcctgtacttgactc
cagccacagtgcagctattatcagctgactgtgcatggaactactttgaa
aacagtttaaccagtatagaattttgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_20625417_20626542
seq2: B6Ng01-304M09.b_45_1170

seq1  GAATTCAGTTTCTCTTTTATGATTAGTAGTGCAGTTACTATGATACCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCTCTTTTATGATTAGTAGTGCAGTTACTATGATACCACT  50

seq1  CCTTGTGCATCCCAGCTCTTGCTGTGGTTCATTTGGGACCTGCTGCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGCATCCCAGCTCTTGCTGTGGTTCATTTGGGACCTGCTGCTGTG  100

seq1  TGTTAGGTGAAGGGATTAGACATCTCTTCTCTTTGAAAGAATCTGTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGTGAAGGGATTAGACATCTCTTCTCTTTGAAAGAATCTGTGGTT  150

seq1  CCGTGGGGAGAAACCGATTCTCCAGGCAGATCAGTGACGTGAGGTCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGGGAGAAACCGATTCTCCAGGCAGATCAGTGACGTGAGGTCATGT  200

seq1  CTGCGAGAGCATCTATGGTGATGATGTAGAGAACAGGAAGACTGGACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGAGAGCATCTATGGTGATGATGTAGAGAACAGGAAGACTGGACCAC  250

seq1  TTACATGTGATCAGAGCATCTGTGGTGATGATGTAGAGAACAGGAAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTGATCAGAGCATCTGTGGTGATGATGTAGAGAACAGGAAGACT  300

seq1  GGGACCACTTACATGTGATCAGGGATGTGGATGAAAGGGCCTTGAATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCACTTACATGTGATCAGGGATGTGGATGAAAGGGCCTTGAATGGA  350

seq1  AGCCTGGTGTAAGAGGCTCCAAGGTGGTTTAATCCAGTCTTCCATATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTGTAAGAGGCTCCAAGGTGGTTTAATCCAGTCTTCCATATCTG  400

seq1  TGTCCCTACCTTAGAGAAATATTTATCCACTCTTGGGTTGGTGATCAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTACCTTAGAGAAATATTTATCCACTCTTGGGTTGGTGATCAACT  450

seq1  AGGCCTTTGGTGGAATTTCCCTATCCATCCAGACTGCAGAAGGCTCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTTGGTGGAATTTCCCTATCCATCCAGACTGCAGAAGGCTCCTTA  500

seq1  GGCCAAGAATTTACAGAGGCCTTTCATGGTGGGGAACTGCACTTCTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGAATTTACAGAGGCCTTTCATGGTGGGGAACTGCACTTCTGGCT  550

seq1  TTTGGTCAGCATTGTAGCCCAAGAATGAAGTCAGCTCTTTGCTAACATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCAGCATTGTAGCCCAAGAATGAAGTCAGCTCTTTGCTAACATTA  600

seq1  CTCTGTCTCAGATGCTTGGTGGCCACATGGGTTGGTGGCCACTCTGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCAGATGCTTGGTGGCCACATGGGTTGGTGGCCACTCTGTTGT  650

seq1  GTGATGTAGATTCAGGACTTTGTTCTCCATACTTGTAGGAAGTCTTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTAGATTCAGGACTTTGTTCTCCATACTTGTAGGAAGTCTTGTTG  700

seq1  ATGAGCACAGTTTTAGGCCCTTGCAACTGCAAAATGCTTCACCTGACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACAGTTTTAGGCCCTTGCAACTGCAAAATGCTTCACCTGACAGC  750

seq1  ACCAGTCAGTGTGGTGTGCAACTTGCAGAGCCTCAGGTTCCATGGCAGAG  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACCAGTCAGTGTGGTGTGCAACTTGCAGAGCCTCA-GTTCCATGGCAGAG  799

seq1  CTGTGGAAATAGAGTGTGCATTTTAATAGCACTCTCAGGAGCAGTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAATAGAGTGTGCATTTTAATAGCACTCTCAGGAGCAGTGTGTG  849

seq1  CACCAGGGTTTGAAAGTACTGTTGTAGGCTGCCCAGAGTCCTGGCTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGGTTTGAAAGTACTGTTGTAGGCTGCCCAGAGTCCTGGCTGTGT  899

seq1  TCAGAGTTGCCTGGTGAGGGAGGGGGTGTCTGTGGACTGGAAGAACCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCAGAGTTGCCTGGTGAGGGAGGGGGTGTCTGTGGACTGGAAG-ACCTGG  948

seq1  TTCTGCTCTCCTGAATTCTGATTTGATAAGATTTGGGT-GAGGCCTGGAG  999
      ||||||||||||||||||||||||||| |||||||||| ||||||| |||
seq2  TTCTGCTCTCCTGAATTCTGATTTGAT-AGATTTGGGTGGAGGCCT-GAG  996

seq1  CTTTTA-TATTTGTAAAAGGC-TCCTCCCTAGTTGATAATCACTGATAGA  1047
      |||||| |||||||||||||| ||||||||||| ||| ||||||||  ||
seq2  CTTTTATTATTTGTAAAAGGCTTCCTCCCTAGTGGAT-ATCACTGAATGA  1045

seq1  CAGGT--GATTATGTCATGTTGTGTGCCAGGTAGTGATGAATCAAGGTTA  1095
      || ||  ||||| |||||| || |||||| ||||||||| ||| ||||||
seq2  CAAGTGGGATTACGTCATGGTG-GTGCCA-GTAGTGATG-ATCCAGGTTA  1092

seq1  TGCATAACTTGGGGA-TAGGATGT--GGTTTTGG  1126
      |||||| |||||||| ||||||||   |||||||
seq2  TGCATACCTTGGGGATTAGGATGTTGCGTTTTGG  1126