BAC Information

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BAC

Clone NameB6Ng01-306P18
Chromosome12 (Build37)
Map Location 114,129,868 - 114,316,190
singlet/doubletdoublet
Overlap geneJag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22
Upstream genePpp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132
Downstream geneMta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306P18.bB6Ng01-306P18.g
ACCGA099878GA099879
length6541,080
definitionB6Ng01-306P18.b B6Ng01-306P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,315,558 - 114,316,190)(114,129,868 - 114,130,943)
sequence
gaattcctgaactcatgaggtggaggcaggagaatcaggagttcaaagtt
atcactggtttagatagcaagttcaaagccagcctgggctacgggagacc
ttgtttcgaaaaaccaaaaccaaaacccgtgcccctcttcccaaataggg
gtaccacttaattattttagggcaaactggcaggttaaaaacattacacg
cgtccacccagtgatgagatctgcttccacaggagaacttcatgtttgta
actagcagaactttccgtgttcctcgtaaaaggcaacacataattagaag
gacctcataatttctgttgctaaagtgaatggaatcttttcatatttcct
ggtttagtgtattgagacacctaagttacaacagtcatataaccaatctt
tctcttttatagttttagctgttttgtggattttctaggcagacattata
ttgttccaatatcaactgtttttttttcccccctatctggctatttaagc
ttcttttcttgacaatggcaaaggcttacactatgaattcccatctccca
ggctgaagctagcccagctactcttatttttccatatgggcttagcttta
agacaagagagacatccggcttgcattcatggaatcgctgccctgttttt
tttt
gaattccagttcgaggggatccaacatcctcttctggtctccttggacac
tgcactctcaggcgcatgcacatgctctttctctctttctctctctctct
ctctcacacacacacacacacacacacacacatcgtgcatacacatatat
gcaaacacataaatatttgtatacatcaaataaaaaacaatcttgctttc
aaatggttacgctgggtgtggtgatacacgcttttgctcctttttgcttt
ttaaaaaattatttatcttatttatgtgagtacactgtcgctgtcttcag
acatcccagaagagggcatcagatctcattacagatgcttgtgagctgcc
atgtggttgctgggaattgaactcaggacctctgggagagccgtcagtgc
tcttaatcgctgagccatctctccagcccgacggtgcacacttttaatgc
cagcacttaggaggcagaggcaagtggatctctttaagttcaaggccagc
ctggtctacagagtgattctagactagtcgggaccactcagtgggagttg
aacacacatgcagatacttttaaatggcaaaattaatagagaaatgcaaa
tcaaagcactaggagatgccacattggcctcaggggagtggctttgggaa
agaagatgtcggtgaggactagggaggctgaacagagagaagtacttgtg
ctgctagaggggcagtggtggcacagaagctgctctggagccttctgcag
atccttccaacgggaagcactgattttgcacacgaaccaacaattacacg
cctagatattgagaaaggagagatgaacatctaggcctacaaagtctcat
tcatgaacattcataactatattgtcaatgatcaccccagacttggagtg
tcctcaagtgtgcttctcctgatggaacagtgtctgggtctgcccacaca
acagcctccaacaaggttctggttctggtgccacaaatcattatcccaaa
ttaatctaaaaggcagtcccccccaggaagaactaataatatcaaacaac
agattcacccgcccgagctccagggactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_114315558_114316190
seq2: B6Ng01-306P18.b_45_698 (reverse)

seq1  AAAAAAAAA---------------------GCAAGCCGGATGTCTCTCTT  29
      |||||||||                     ||||||||||||||||||||
seq2  AAAAAAAAACAGGGCAGCGATTCCATGAATGCAAGCCGGATGTCTCTCTT  50

seq1  GTCTTAAAGCTAAGCCCATATGGAAAAATAAGAGTAGCTGGGCTAGCTTC  79
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAGCTAAGCCCATATGGAAAAATAAGAGTAGCTGGGCTAGCTTC  100

seq1  AGCCTGGGAGATGGGAATTCATAGTGTAAGCCTTTGCCATTGTCAAGAAA  129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGAGATGGGAATTCATAGTGTAAGCCTTTGCCATTGTCAAGAAA  150

seq1  AGAAGCTTAAATAGCCAGATAGGGGGGAAAAAAAAACAGTTGATATTGGA  179
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTAAATAGCCAGATAGGGGGGAAAAAAAAACAGTTGATATTGGA  200

seq1  ACAATATAATGTCTGCCTAGAAAATCCACAAAACAGCTAAAACTATAAAA  229
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATAATGTCTGCCTAGAAAATCCACAAAACAGCTAAAACTATAAAA  250

seq1  GAGAAAGATTGGTTATATGACTGTTGTAACTTAGGTGTCTCAATACACTA  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGATTGGTTATATGACTGTTGTAACTTAGGTGTCTCAATACACTA  300

seq1  AACCAGGAAATATGAAAAGATTCCATTCACTTTAGCAACAGAAATTATGA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGAAATATGAAAAGATTCCATTCACTTTAGCAACAGAAATTATGA  350

seq1  GGTCCTTCTAATTATGTGTTGCCTTTTACGAGGAACACGGAAAGTTCTGC  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCTAATTATGTGTTGCCTTTTACGAGGAACACGGAAAGTTCTGC  400

seq1  TAGTTACAAACATGAAGTTCTCCTGTGGAAGCAGATCTCATCACTGGGTG  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACAAACATGAAGTTCTCCTGTGGAAGCAGATCTCATCACTGGGTG  450

seq1  GACGCGTGTAATGTTTTTAACCTGCCAGTTTGCCCTAAAATAATTAAGTG  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCGTGTAATGTTTTTAACCTGCCAGTTTGCCCTAAAATAATTAAGTG  500

seq1  GTACCCCTATTTGGGAAGAGGGGCACGGGTTTTGGTTTTGGTTTTTCGAA  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCCTATTTGGGAAGAGGGGCACGGGTTTTGGTTTTGGTTTTTCGAA  550

seq1  ACAAGGTCTCCCGTAGCCCAGGCTGGCTTTGAACTTGCTATCTAAACCAG  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTCTCCCGTAGCCCAGGCTGGCTTTGAACTTGCTATCTAAACCAG  600

seq1  TGATAACTTTGAACTCCTGATTCTCCTGCCTCCACCTCATGAGTTCAGGA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTTTGAACTCCTGATTCTCCTGCCTCCACCTCATGAGTTCAGGA  650

seq1  ATTC  633
      ||||
seq2  ATTC  654

seq1: chr12_114129868_114130943
seq2: B6Ng01-306P18.g_67_1146

seq1  GAATTCCAGTTCGAGGGGATCCAACATCCTCTTCTGGTCTCCTTGGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTCGAGGGGATCCAACATCCTCTTCTGGTCTCCTTGGACAC  50

seq1  TGCACTCTCAGGCGCATGCACATGCTCTTTCTCTCTTTCTCTCTCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCTCAGGCGCATGCACATGCTCTTTCTCTCTTTCTCTCTCTCTCT  100

seq1  CTCTCACACACACACACACACACACACACACATCGTGCATACACATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACACACACACACACACACACACACACATCGTGCATACACATATAT  150

seq1  GCAAACACATAAATATTTGTATACATCAAATAAAAAACAATCTTGCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACATAAATATTTGTATACATCAAATAAAAAACAATCTTGCTTTC  200

seq1  AAATGGTTACGCTGGGTGTGGTGATACACGCTTTTGCTCCTTTTTGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTACGCTGGGTGTGGTGATACACGCTTTTGCTCCTTTTTGCTTT  250

seq1  TTAAAAAATTATTTATCTTATTTATGTGAGTACACTGTCGCTGTCTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATTATTTATCTTATTTATGTGAGTACACTGTCGCTGTCTTCAG  300

seq1  ACATCCCAGAAGAGGGCATCAGATCTCATTACAGATGCTTGTGAGCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCAGAAGAGGGCATCAGATCTCATTACAGATGCTTGTGAGCTGCC  350

seq1  ATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGGAGAGCCGTCAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGGAGAGCCGTCAGTGC  400

seq1  TCTTAATCGCTGAGCCATCTCTCCAGCCCGACGGTGCACACTTTTAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCGCTGAGCCATCTCTCCAGCCCGACGGTGCACACTTTTAATGC  450

seq1  CAGCACTTAGGAGGCAGAGGCAAGTGGATCTCTTTAAGTTCAAGGCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTAGGAGGCAGAGGCAAGTGGATCTCTTTAAGTTCAAGGCCAGC  500

seq1  CTGGTCTACAGAGTGATTCTAGACTAGTCGGGACCACTCAGTGGGAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAGAGTGATTCTAGACTAGTCGGGACCACTCAGTGGGAGTTG  550

seq1  AACACACATGCAGATACTTTTAAATGGCAAAATTAATAGAGAAATGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACATGCAGATACTTTTAAATGGCAAAATTAATAGAGAAATGCAAA  600

seq1  TCAAAGCACTAGGAGATGCCACATTGGCCTCAGGGGAGTGGCTTTGGG-A  649
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAAAGCACTAGGAGATGCCACATTGGCCTCAGGGGAGTGGCTTTGGGAA  650

seq1  AGAAGATGTCGGTGAGGACTAGGGAGGCTGAACAGAGAGAAGTACTTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGTCGGTGAGGACTAGGGAGGCTGAACAGAGAGAAGTACTTGTG  700

seq1  CTGCTAGAGGGGCAGTGGTGGCACAGAAGCTGCTCTGGAGCCTTCTGCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGAGGGGCAGTGGTGGCACAGAAGCTGCTCTGGAGCCTTCTGCAG  750

seq1  ATCCTTCCAACGGGAAGCACTGATTTTGCACACGAACCAACAATTACACG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCAACGGGAAGCACTGATTTTGCACACGAACCAACAATTACACG  800

seq1  CCTAGATATTGAGAAAGGAGAGATGAACATCTAGGCCTACAAAGTCTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATATTGAGAAAGGAGAGATGAACATCTAGGCCTACAAAGTCTCAT  850

seq1  TCATGAACATTCATAACTATATTGTCAATGATCA-CCCAGAC-TGGAGTG  897
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TCATGAACATTCATAACTATATTGTCAATGATCACCCCAGACTTGGAGTG  900

seq1  TCCTCAAGTGTGCTTCTCCTGATGG-ACAGTGTCT-GGTCTG-CCACACA  944
      ||||||||||||||||||||||||| ||||||||| |||||| |||||||
seq2  TCCTCAAGTGTGCTTCTCCTGATGGAACAGTGTCTGGGTCTGCCCACACA  950

seq1  ACAGCCTCCAACAAGGTCCTGGTCCTGGTGCCACCAATCATTATCCCAAA  994
      ||||||||||||||||| ||||| |||||||||| |||||||||||||||
seq2  ACAGCCTCCAACAAGGTTCTGGTTCTGGTGCCACAAATCATTATCCCAAA  1000

seq1  TTAAATCTAAAAGGCAGCCCCCCCCAGGAAGAAC-AATAATATCAACCAA  1043
      || |||||||||||||| |||||||||||||||| ||||||||||| |||
seq2  TT-AATCTAAAAGGCAGTCCCCCCCAGGAAGAACTAATAATATCAAACAA  1049

seq1  CCAGATCCCCCCCCCCGAGCTCCCAGGGACTAA  1076
       ||||| | ||| |||||||| |||||||||||
seq2  -CAGATTCACCCGCCCGAGCT-CCAGGGACTAA  1080