BAC Information

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BAC

Clone NameB6Ng01-308D16
Chromosome12 (Build37)
Map Location 33,335,059 - 33,336,150
singlet/doubletsinglet
Overlap genenone
Upstream geneDus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg, 2010109K11Rik, LOC100043548
Downstream genePbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308D16.bB6Ng01-308D16.g
ACCGA100785GA100786
length1,1191,161
definitionB6Ng01-308D16.b B6Ng01-308D16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatatctaagtgtagcaacaagtgtctagagaatggggtttttg
aaggcagaaactcatcctagcatctgtctcagcagctgctgggagagttt
aatgtatacaagtagttttatagaggctaagataagcagttagcaggcag
attaacagaacctaaaatagctggtgtatcttgatgatgtctatctagaa
tagagttggataattttctatgaaattctccatcaagaagatcaaattct
agttaaacttgaagtagcctcagcaagaatacaagatgagggggatgtct
ctgcactgtcttgccctgtcatactatcaacttctgtgcctttggctaaa
ctatacaaaatctgagccttatacgtatctgaagaaaaaaaaaatggagg
caatgagaaacctggttttaaaggtgttttaagagggtgggtcagggagc
agggcggggaagggtataggggactttcaggatagcatttgaaatgtaaa
tgaagaaaatatctaataaaaaaacctaaaaaaataaaaataaaagtgtt
ttaaaaagtatttagtgacatacaaaaatactgtggtccattggaaacat
gaagttttgtttgtatgcttgcttgtttggagacagtatctcacttgtag
actggctaaactctttcacctgcctgcttctgcctcccaagtgctatgtt
ccacttgcttattattattattattattattattattattattattatta
ttatagcataatttcatgacttgtaagaccactgaaacaggcagttagaa
gctgcttttgctgaagaccatgtctcctcacttaggcccataagcagcta
aagcaggatgagagcctggctctccactttcattctatgcctgtcacttt
cacttttgctgagacttctactttattttgtataccctaaccctatctca
tcctccctttcaagggctgaagaacacaggaatttggaatttctagttaa
ggagtaaaactttcaggaacaggattacccacttcccctcttgaataggg
ctatttattttttggagggatcagggattacacccagaaaaagaaaacta
aaactcatcttgtaggaat
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccatgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaacttatgaaattcctagccaa
atggatggacctgaggaactcacacaatatgtactcactgataagtggat
attagccccaaacctaggatacccaagatataagatacaatttgctaaac
acatgaaactcaagaagaatgaagactgaagtgtggacactatgctccgc
cttagaattgggaacaaaacacccatggaaggagttacagagacaaagtt
tggagctgagatgaaaggatggaccatgtagagactgccatatccaggga
tccaccccataatcagcatccaaacgctgacaccattgcatacactagca
agattttactgaaaggacccagatgtagctgtctcttgtgagactatgcc
ggggcctagcaaacacagaagtggatgctcacagtcagctaatggatgga
tcacagggctcccaatggaggagctagagaaagtacccaaggagttaaag
ggatctgcaacctataggtggatcacattatgaactaaccagtaccccgg
agcttttgactcttagctgcattatgttatcaaaagatggcctagtcggc
atcactggtaaagaaagtccatgactgcaactttatatgctcagtacagg
acgctcaggctataggtaattgattggctagcggatctaaactagctagc
ttcaggtgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_33335059_33336150
seq2: B6Ng01-308D16.b_48_1166

seq1  GAATTCTATATCTAAGTGTAGCAACAAGTGTCTAGAGAATGGGGTTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATCTAAGTGTAGCAACAAGTGTCTAGAGAATGGGGTTTTTG  50

seq1  AAGGCAGAAACTCATCCTAGCATCTGTCTCAGCAGCTGCTGGGAGAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAAACTCATCCTAGCATCTGTCTCAGCAGCTGCTGGGAGAGTTT  100

seq1  AATGTATACAAGTAGTTTTATAGAGGCTAAGATAAGCAGTTAGCAGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATACAAGTAGTTTTATAGAGGCTAAGATAAGCAGTTAGCAGGCAG  150

seq1  ATTAACAGAACCTAAAATAGCTGGTGTATCTTGATGATGTCTATCTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAGAACCTAAAATAGCTGGTGTATCTTGATGATGTCTATCTAGAA  200

seq1  TAGAGTTGGATAATTTTCTATGAAATTCTCCATCAAGAAGATCAAATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTGGATAATTTTCTATGAAATTCTCCATCAAGAAGATCAAATTCT  250

seq1  AGTTAAACTTGAAGTAGCCTCAGCAAGAATACAAGATGAGGGGGATGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAACTTGAAGTAGCCTCAGCAAGAATACAAGATGAGGGGGATGTCT  300

seq1  CTGCACTGTCTTGCCCTGTCATACTATCAACTTCTGTGCCTTTGGCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGTCTTGCCCTGTCATACTATCAACTTCTGTGCCTTTGGCTAAA  350

seq1  CTATACAAAATCTGAGCCTTATACGTATCTGAAGAAAAAAAAAATGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAAAATCTGAGCCTTATACGTATCTGAAGAAAAAAAAAATGGAGG  400

seq1  CAATGAGAAACCTGGTTTTAAAGGTGTTTTAAGAGGGTGGGTCAGGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGAAACCTGGTTTTAAAGGTGTTTTAAGAGGGTGGGTCAGGGAGC  450

seq1  AGGGCGGGGAAGGGTATAGGGGACTTTCAGGATAGCATTTGAAATGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGGGGAAGGGTATAGGGGACTTTCAGGATAGCATTTGAAATGTAAA  500

seq1  TGAAGAAAATATCTAATAAAAAAACCTAAAAAAATAAAAATAAAAGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAATATCTAATAAAAAAACCTAAAAAAATAAAAATAAAAGTGTT  550

seq1  TTAAAAAGTATTTAGTGACATACAAAAATACTGTGGTCCATTGGAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTATTTAGTGACATACAAAAATACTGTGGTCCATTGGAAACAT  600

seq1  GAAGTTTTGTTTGTATGCTTGCTTGTTTGGAGACAGTATCTCACTTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTTGTTTGTATGCTTGCTTGTTTGGAGACAGTATCTCACTTGTAG  650

seq1  ACTGGCTAAACTCTTTCACCTGCCTGCTTCTGCCTCCCAAGTGCTATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTAAACTCTTTCACCTGCCTGCTTCTGCCTCCCAAGTGCTATGTT  700

seq1  CCACTTGCTTATTATTATTATTATTATTATTATTATTATTATTATTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGCTTATTATTATTATTATTATTATTATTATTATTATTATTATTA  750

seq1  TTATAGCATAATTTCATGACTTGTAAGACCACTGAAACAGGCAGTTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCATAATTTCATGACTTGTAAGACCACTGAAACAGGCAGTTAGAA  800

seq1  GCTGCTTTTGCTGAAGACCATGTCTCCTCACTTAGGCCCATAAGCAGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTGCTTTTGCTGAAGACCATGTCTCCTCACTTAGGCCCATAAGCAGCT-  849

seq1  AAAGCAGGATGAGAGCCTGGCTCTCCACTTTCATTCTATGCCTGTCACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGATGAGAGCCTGGCTCTCCACTTTCATTCTATGCCTGTCACTT  899

seq1  TCACTTTTGCTGAGACTTCTACTTTATTTTGTATA-CCTAA-CCTATCTC  948
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  TCACTTTTGCTGAGACTTCTACTTTATTTTGTATACCCTAACCCTATCTC  949

seq1  AT-CTCCC-TTCAA-GGCTGAAG-ACACA-GAATTTGGA--TTCTAGT--  989
      || ||||| ||||| |||||||| ||||| |||||||||  |||||||  
seq2  ATCCTCCCTTTCAAGGGCTGAAGAACACAGGAATTTGGAATTTCTAGTTA  999

seq1  AAGAGTAAA--CTTCAGG-ACAG--ATAACCACT--CCCTCTTGAATAGG  1032
      | |||||||   |||||| ||||   || |||||  ||||||||||||||
seq2  AGGAGTAAAACTTTCAGGAACAGGATTACCCACTTCCCCTCTTGAATAGG  1049

seq1  --CAATTATTTTT--GAGG--ACAAGGA-TACACCCAG-AAAAGAAA--C  1072
         | ||||||||  ||||   || ||| ||||||||| ||||||||   
seq2  GCTATTTATTTTTTGGAGGGATCAGGGATTACACCCAGAAAAAGAAAACT  1099

seq1  AAAACTCATCTTGTAGGAAT  1092
      ||||||||||||||||||||
seq2  AAAACTCATCTTGTAGGAAT  1119