BAC Information

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BAC

Clone NameB6Ng01-308H21
Chromosome12 (Build37)
Map Location 38,285,007 - 38,402,923
singlet/doubletdoublet
Overlap genenone
Upstream geneMeox2, A530016O06Rik
Downstream geneLOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308H21.bB6Ng01-308H21.g
ACCGA100980GA100981
length1,0081,115
definitionB6Ng01-308H21.b B6Ng01-308H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,285,007 - 38,285,961)(38,401,804 - 38,402,923)
sequence
gaattctttatatctattatataagtcactctgcaggaagtcctggtctg
tttgataagaggaactttgtgtttcacattggtaaaacatagataaaagc
ttaaaactatacaaacttgcctgtacaatgatttctctgtccgtttgaac
aggtcacaagtttcctttttcttctggatggcctcaaattcactctcact
tctgtcttctaagtgccaggccatgcaaggcttgtcactctgttgtgtat
ctatctaagaatagaatgtatagtcaaatgaaatattttcatctcttttt
tgtaatcccttcaattctgacataaaatatgcattatttagttatatata
aaatagattatatatattatactaaaaaatatcaaactgatttatctgga
aaaattattcaattcagcatacaatttgaccaaatagaatctttttcaaa
agcaattttttattagatattttcttcatctacatttcaaatgctatcct
gaaagtcccctataccctacccctgcccctatccctaagccacccactcc
cactcctggtcctatcattcccttagactggggcatataatattcgcaaa
atcaagggcctctcctcctattgatgtctaactagaccatcctctgctac
atatgaaactagggacacaagttcaggccggtactggttagttcatattt
ttgttcctcctatagggttacagacacctttagctccttaggtactttcg
ctagctccttcattaggggccctgtgttccatacaatagatgactgtgag
aatccacttctatatttgccagtcattggcatagactcacaagagactgc
taatcagggtcctgtcagcaaaatcttgctggcatatgcagtagtgtctg
ggtttgatcgtagtttattggatggatgtccaggtggggcagactctgaa
tcattcttctttccatctcagctctgaaatttatctttgcaactcctcca
tgggtatt

gaattccttctttaattgcatagttcctcatttattttctttgtttaaac
acagataaattacttacgtatgagattttcagtgatgtcaacagtaaaaa
catgtggttttatttgttcagagaaaattgctagtgatcagtattggatg
caacataaacatttgagatgaaatgactttttaattagatatttaattat
tttaatcaatcagaagacactcagatattattgatggcactgttgatttt
gatactccctgaggagatattagtgagtttgaattcaatgtgttttctat
ctacaatatttcagtgaaagatgtatgagtctaaaggatctacacaaaca
tatcaataaactgaaagacttgaactaattttataaaccttatttcaaaa
acatatttcaaaggctatgcttttaatatatcactagctgtctgtttagg
caaagatttgtttttcctatccagaaattttaccttgtacgttcttggat
gactgaatgtcaaattaggaaactgataattaaacactggcctctgttct
tcttcttttatttgttttgtttttaatctacattgacaaaactggaacaa
ctcctaagactttgagaaactactcaagggaaacgtcaaaattgttcttc
ctctagaagttttaaatatcaattaccatctttttaagcttatatcatgc
tgataagataatgtgagaaactcttgcttaaatatactatagcataacta
tcatccaatttgacaatcataaatgattatacatacttggctataaggaa
gcttgtaaggaaagcatttaggctaactgcagatcttcaccgctccctcc
tttcctctgaatccaatccttgagtctcatcctcagctctctagcaacac
cctttactctcctgtctcatgtccagcacattatagaggtctttaccttc
actcagaggtaattcaaaacctgaagctgtaagagaaccaataaagaaaa
atacccaaactgaagaaaatctgtaagtagaaaaactgtactcaaacaga
aacctcagaagtcagctcatcagaaacactacagaagatgggagtgataa
tctcagcataaggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_38285007_38285961
seq2: B6Ng01-308H21.b_48_1002

seq1  GAATTCTTTATATCTATTATATAAGTCACTCTGCAGGAAGTCCTGGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATATCTATTATATAAGTCACTCTGCAGGAAGTCCTGGTCTG  50

seq1  TTTGATAAGAGGAACTTTGTGTTTCACATTGGTAAAACATAGATAAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAAGAGGAACTTTGTGTTTCACATTGGTAAAACATAGATAAAAGC  100

seq1  TTAAAACTATACAAACTTGCCTGTACAATGATTTCTCTGTCCGTTTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTATACAAACTTGCCTGTACAATGATTTCTCTGTCCGTTTGAAC  150

seq1  AGGTCACAAGTTTCCTTTTTCTTCTGGATGGCCTCAAATTCACTCTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACAAGTTTCCTTTTTCTTCTGGATGGCCTCAAATTCACTCTCACT  200

seq1  TCTGTCTTCTAAGTGCCAGGCCATGCAAGGCTTGTCACTCTGTTGTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTCTAAGTGCCAGGCCATGCAAGGCTTGTCACTCTGTTGTGTAT  250

seq1  CTATCTAAGAATAGAATGTATAGTCAAATGAAATATTTTCATCTCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAAGAATAGAATGTATAGTCAAATGAAATATTTTCATCTCTTTTT  300

seq1  TGTAATCCCTTCAATTCTGACATAAAATATGCATTATTTAGTTATATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCCTTCAATTCTGACATAAAATATGCATTATTTAGTTATATATA  350

seq1  AAATAGATTATATATATTATACTAAAAAATATCAAACTGATTTATCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATTATATATATTATACTAAAAAATATCAAACTGATTTATCTGGA  400

seq1  AAAATTATTCAATTCAGCATACAATTTGACCAAATAGAATCTTTTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTCAATTCAGCATACAATTTGACCAAATAGAATCTTTTTCAAA  450

seq1  AGCAATTTTTTATTAGATATTTTCTTCATCTACATTTCAAATGCTATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTTTTTATTAGATATTTTCTTCATCTACATTTCAAATGCTATCCT  500

seq1  GAAAGTCCCCTATACCCTACCCCTGCCCCTATCCCTAAGCCACCCACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCCCTATACCCTACCCCTGCCCCTATCCCTAAGCCACCCACTCC  550

seq1  CACTCCTGGTCCTATCATTCCCTTAGACTGGGGCATATAATATTCGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGGTCCTATCATTCCCTTAGACTGGGGCATATAATATTCGCAAA  600

seq1  ATCAAGGGCCTCTCCTCCTATTGATGTCTAACTAGACCATCCTCTGCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGGCCTCTCCTCCTATTGATGTCTAACTAGACCATCCTCTGCTAC  650

seq1  ATATGAAACTAGGGACACAAGTTCAGGCCGGTACTGGTTAGTTCATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAACTAGGGACACAAGTTCAGGCCGGTACTGGTTAGTTCATATTT  700

seq1  TTGTTCCTCCTATAGGGTTACAGACACCTTTAGCTCCTTAGGTACTTTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTCCTATAGGGTTACAGACACCTTTAGCTCCTTAGGTACTTTCG  750

seq1  CTAGCTCCTTCATTAGGGGCCCTGTGTTCCATACAATAGATGACTGTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCCTTCATTAGGGGCCCTGTGTTCCATACAATAGATGACTGTGAG  800

seq1  AATCCACTTCTATATTTGCCAGTCATTGGCATAGACTCACAAGAGACTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACTTCTATATTTGCCAGTCATTGGCATAGACTCACAAGAGACTGC  850

seq1  TAATCAGGGTCCTGTCAGCAAAATCTTGCTGGCATATGCAGTAGTGTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGGGTCCTGTCAGCAAAATCTTGCTGGCATATGCAGTAGTGTCTG  900

seq1  GGTTTGATCGTAGTTTATTGGATGGATGTCCAGGTGGGGCAGACTCTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGATCGTAGTTTATTGGATGGATGTCCAGGTGGGGCAGACTCTGAA  950

seq1  TCATT  955
      |||||
seq2  TCATT  955


seq1: chr12_38401804_38402923
seq2: B6Ng01-308H21.g_67_1181 (reverse)

seq1  GTCCTTAATACCTGAGATTATCACTTCCATCTCTTGTAGTGTTTCTGATG  50
      |||||||    |||||||||||||| ||||||  ||||||||||||||||
seq2  GTCCTTA--TGCTGAGATTATCACTCCCATCTTCTGTAGTGTTTCTGATG  48

seq1  AGGCTGACCTCTGAGGTTTCTGTTTGAGTTACCAAGTTTTCTACTTACAG  100
      | |||||| ||||||||||||||||||||   ||  ||||||||||||||
seq2  A-GCTGACTTCTGAGGTTTCTGTTTGAGT--ACAGTTTTTCTACTTACAG  95

seq1  ATTTTCTTCAGTTTGGGTATTTTTCTTTATTGGTTCTCTTACAGCTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTTTCTTCAGTTTGGGTATTTTTCTTTATTGGTTCTCTTACAGC-TTCA  144

seq1  GGTTTTGAATTACCTCTGAGTG-AGGTAAAGACCTCTATAATGTGCTGGA  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGTTTTGAATTACCTCTGAGTGAAGGTAAAGACCTCTATAATGTGCTGGA  194

seq1  CATGAGACAGGAGAGTAAAGGGTGTTGCTAGAGAGCTGAGGATGAGACTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGACAGGAGAGTAAAGGGTGTTGCTAGAGAGCTGAGGATGAGACTC  244

seq1  AAGGATTGGATTCAGAGGAAAGGAGGGAGCGGTGAAGATCTGCAGTTAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGGATTCAGAGGAAAGGAGGGAGCGGTGAAGATCTGCAGTTAGC  294

seq1  CTAAATGCTTTCCTTACAAGCTTCCTTATAGCCAAGTATGTATAATCATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGCTTTCCTTACAAGCTTCCTTATAGCCAAGTATGTATAATCATT  344

seq1  TATGATTGTCAAATTGGATGATAGTTATGCTATAGTATATTTAAGCAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTGTCAAATTGGATGATAGTTATGCTATAGTATATTTAAGCAAGA  394

seq1  GTTTCTCACATTATCTTATCAGCATGATATAAGCTTAAAAAGATGGTAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCACATTATCTTATCAGCATGATATAAGCTTAAAAAGATGGTAAT  444

seq1  TGATATTTAAAACTTCTAGAGGAAGAACAATTTTGACGTTTCCCTTGAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTAAAACTTCTAGAGGAAGAACAATTTTGACGTTTCCCTTGAGT  494

seq1  AGTTTCTCAAAGTCTTAGGAGTTGTTCCAGTTTTGTCAATGTAGATTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCAAAGTCTTAGGAGTTGTTCCAGTTTTGTCAATGTAGATTAAA  544

seq1  AACAAAACAAATAAAAGAAGAAGAACAGAGGCCAGTGTTTAATTATCAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAATAAAAGAAGAAGAACAGAGGCCAGTGTTTAATTATCAGT  594

seq1  TTCCTAATTTGACATTCAGTCATCCAAGAACGTACAAGGTAAAATTTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATTTGACATTCAGTCATCCAAGAACGTACAAGGTAAAATTTCTG  644

seq1  GATAGGAAAAACAAATCTTTGCCTAAACAGACAGCTAGTGATATATTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAAAAACAAATCTTTGCCTAAACAGACAGCTAGTGATATATTAAA  694

seq1  AGCATAGCCTTTGAAATATGTTTTTGAAATAAGGTTTATAAAATTAGTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGCCTTTGAAATATGTTTTTGAAATAAGGTTTATAAAATTAGTTC  744

seq1  AAGTCTTTCAGTTTATTGATATGTTTGTGTAGATCCTTTAGACTCATACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTCAGTTTATTGATATGTTTGTGTAGATCCTTTAGACTCATACA  794

seq1  TCTTTCACTGAAATATTGTAGATAGAAAACACATTGAATTCAAACTCACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACTGAAATATTGTAGATAGAAAACACATTGAATTCAAACTCACT  844

seq1  AATATCTCCTCAGGGAGTATCAAAATCAACAGTGCCATCAATAATATCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCCTCAGGGAGTATCAAAATCAACAGTGCCATCAATAATATCTG  894

seq1  AGTGTCTTCTGATTGATTAAAATAATTAAATATCTAATTAAAAAGTCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTCTGATTGATTAAAATAATTAAATATCTAATTAAAAAGTCATT  944

seq1  TCATCTCAAATGTTTATGTTGCATCCAATACTGATCACTAGCAATTTTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCAAATGTTTATGTTGCATCCAATACTGATCACTAGCAATTTTCT  994

seq1  CTGAACAAATAAAACCACATGTTTTTACTGTTGACATCACTGAAAATCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAAATAAAACCACATGTTTTTACTGTTGACATCACTGAAAATCTC  1044

seq1  ATACGTAAGTAATTTATCTGTGTTTAAACAAAGAAAATAAATGAGGAACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTAAGTAATTTATCTGTGTTTAAACAAAGAAAATAAATGAGGAACT  1094

seq1  ATGCAATTAAAGAAGGAATTC  1120
      |||||||||||||||||||||
seq2  ATGCAATTAAAGAAGGAATTC  1115


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