BAC Information

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BAC

Clone NameB6Ng01-308P12
Chromosome12 (Build37)
Map Location 112,816,730 - 112,947,868
singlet/doubletdoublet
Overlap geneMark3, Ckb, 6720458F09Rik
Upstream genePpp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5
Downstream geneBag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308P12.bB6Ng01-308P12.g
ACCGA101327GA101328
length1,0311,068
definitionB6Ng01-308P12.b B6Ng01-308P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,946,853 - 112,947,868)(112,816,730 - 112,817,797)
sequence
gaattccagggttgaataaaatccaagcatagaaagagacgctttattat
gctaaacagtgctgggactttttaaagttacaaggcctaatgggtcctgc
ccagttttaatggggtggggtttttgtttggatggtctgttttatcataa
acatttttgcttgaaaaaaatctgtccccctgtgctgttcattttagagg
ggggatcttgtgtccaacacacaaaattgatgaagcctaacaacccagga
tttgtaaccatactgaggaagggatgaaacatcacgtgatgccttcaagc
tacttttgctgtgtgatcccaacttaaaattctccttattagttaataag
gatagggaacatttaaatgatgtgagtagacctttagagagagagaaaaa
aaaaagaatgtcactctctacctgtaactgcaagatgaaagtcgtacctg
atgtcaggtcactccagagctatcaggagcaactacctgtagcataaatg
agatggattcctgtcagtcacagctgtgaaatggacaagcctgttaaaca
taacgtttttttacaccatgatgcgaaacactattgtaaatccagaggga
ctggtctctgcagccatcagacaataactgcagctggtaccctaatagca
cctgcagctcatactgacactaggactcctgcctgacaattcattagacc
ctgtcagttatacaaagggttttatccttccatgtgtttccgtgaatatt
ttctaagtagccaacactttcacgattgtctattaataaaaacaaacttc
ccaaaattctgcagcgctttgataacacaggccccaacataactaccgac
ctcaattccatgttcccgtttcattacacggctcttatgagagcttgacc
tttttcaaccctgatgagctgtggtttaattttggaaaagtttggtaagg
gaaattctcttttaaaccatctaccacccagccgggcagtgtgtggccgc
acggccttttaatcccaagctcttgggaggc
gaattcacttgcctctgcctcccaagtgttgagattaaatttgtggacca
cttcatcctagccttttaagaagctctggcttcttttttttttaagattt
tatttatttgatgcatgtgagtacactgtagctgtacagatggttgtgag
ccttcatgtggttgttggaaattgaattttttaggacctctgcttgctct
ggtcaatctcgctcgctccagtcagccctggttgctcagtcccaaagatt
tatttattatacataagtgcactgtagctgacttcagacccaccagaaga
gggcatcagatctcattatgggtggttgtgagcatcatgtggttgctggg
atttgaactcaggagctttggaagagcagtcagtgctcttacccactgag
ccatctcgccagcctgaagctctggcttttatctgcagtgtaaatataaa
tcaagaaacataatttgcagtgatattagttatttccaccttgtatacta
tttgttcttaagtgtttgatttccatgttactgctcacctatgaatagga
atataaaagttatagctcagaaaaaacagttaaaattctggggccagaag
atggttgtgtctagtgttctgggactggaatttcaggtggttgtgagacc
cggtgtgggacctgggaactcaaacctgtgtctggaacaccccttaatca
tttagccacctctccagcccaaaagcaggaggctttttaaagataaagtt
tacctttttgtggtatgttctataattgacttgcaaagggatccattagt
aaatcctgtttttttttttgttttttgtgtttttttttaaaagatttatt
tattatatgtaagtacactgtagctgtcttcagacactccagaagaggga
gtcatatctccttacaaatggttgtgagccaccgtgtggttgctggaatt
tgaactcaaggacctttcagaagagcagtcgtgctctactcgctggagca
ttctcactagccccagtaatccttgttttatttgacaagatagaaattaa
tttcaaggcaggttgacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112946853_112947868
seq2: B6Ng01-308P12.b_48_1078 (reverse)

seq1  GCCTCCCAAGTGC-TGGGATTAAA--GGCGTGC-GCCAC-CACTGCCCGG  45
      |||||||||| || ||||||||||  | ||||| ||||| ||||||||||
seq2  GCCTCCCAAGAGCTTGGGATTAAAAGGCCGTGCGGCCACACACTGCCCGG  50

seq1  CTGGGT-GTAGTTG--TTTAAAGAGAATTT-CCTTACAAAACTTTTCC-A  90
      |||||| |||| ||  || ||||||||||| |||||| |||||||||| |
seq2  CTGGGTGGTAGATGGTTTAAAAGAGAATTTCCCTTACCAAACTTTTCCAA  100

seq1  AATTAAACCACAGCTCATCAGGGTTG-AAAAGGTC-AGCTCTCAT-AGGG  137
      |||||||||||||||||||||||||| |||||||| ||||||||| || |
seq2  AATTAAACCACAGCTCATCAGGGTTGAAAAAGGTCAAGCTCTCATAAGAG  150

seq1  CCGTGTAATGAAACGGGAACATGGAA-TGAGGTCGGTAGTTATGTTGGGG  186
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCGTGTAATGAAACGGGAACATGGAATTGAGGTCGGTAGTTATGTTGGGG  200

seq1  CCTGTGTTATCAAAGCGCTGCAGAATTTTGGGAAGTTTGTTTTTATTAAT  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTATCAAAGCGCTGCAGAATTTTGGGAAGTTTGTTTTTATTAAT  250

seq1  AGACAATCGTG-AAGTGTTGGCTACTTAGAAAATATTCACGGAAACACAT  285
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGACAATCGTGAAAGTGTTGGCTACTTAGAAAATATTCACGGAAACACAT  300

seq1  GGAAGGATAAAACCCTTTGTATAACTGACAGGGTCTAATGAATTGTCAGG  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATAAAACCCTTTGTATAACTGACAGGGTCTAATGAATTGTCAGG  350

seq1  CAGGAGTCCTAGTGTCAGTATGAGCTGCAGGTGCTATTAGGGTACCAGCT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCCTAGTGTCAGTATGAGCTGCAGGTGCTATTAGGGTACCAGCT  400

seq1  GCAGTTATTGTCTGATGGCTGCAGAGACCAGTCCCTCTGGATTTACAATA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTATTGTCTGATGGCTGCAGAGACCAGTCCCTCTGGATTTACAATA  450

seq1  GTGTTTCGCATCATGGTGTAAAAAAACGTTATGTTTAACAGGCTTGTCCA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCGCATCATGGTGTAAAAAAACGTTATGTTTAACAGGCTTGTCCA  500

seq1  TTTCACAGCTGTGACTGACAGGAATCCATCTCATTTATGCTACAGGTAGT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGCTGTGACTGACAGGAATCCATCTCATTTATGCTACAGGTAGT  550

seq1  TGCTCCTGATAGCTCTGGAGTGACCTGACATCAGGTACGACTTTCATCTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGATAGCTCTGGAGTGACCTGACATCAGGTACGACTTTCATCTT  600

seq1  GCAGTTACAGGTAGAGAGTGACATTCTTTTTTTTTTCTCTCTCTCTAAAG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTACAGGTAGAGAGTGACATTCTTTTTTTTTTCTCTCTCTCTAAAG  650

seq1  GTCTACTCACATCATTTAAATGTTCCCTATCCTTATTAACTAATAAGGAG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTCACATCATTTAAATGTTCCCTATCCTTATTAACTAATAAGGAG  700

seq1  AATTTTAAGTTGGGATCACACAGCAAAAGTAGCTTGAAGGCATCACGTGA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAGTTGGGATCACACAGCAAAAGTAGCTTGAAGGCATCACGTGA  750

seq1  TGTTTCATCCCTTCCTCAGTATGGTTACAAATCCTGGGTTGTTAGGCTTC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATCCCTTCCTCAGTATGGTTACAAATCCTGGGTTGTTAGGCTTC  800

seq1  ATCAATTTTGTGTGTTGGACACAAGATCCCCCCTCTAAAATGAACAGCAC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTTGTGTGTTGGACACAAGATCCCCCCTCTAAAATGAACAGCAC  850

seq1  AGGGGGACAGATTTTTTTCAAGCAAAAATGTTTATGATAAAACAGACCAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGACAGATTTTTTTCAAGCAAAAATGTTTATGATAAAACAGACCAT  900

seq1  CCAAACAAAAACCCCACCCCATTAAAACTGGGCAGGACCCATTAGGCCTT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAAAACCCCACCCCATTAAAACTGGGCAGGACCCATTAGGCCTT  950

seq1  GTAACTTTAAAAAGTCCCAGCACTGTTTAGCATAATAAAGCGTCTCTTTC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTTAAAAAGTCCCAGCACTGTTTAGCATAATAAAGCGTCTCTTTC  1000

seq1  TATGCTTGGATTTTATTCAACCCTGGAATTC  1016
      |||||||||||||||||||||||||||||||
seq2  TATGCTTGGATTTTATTCAACCCTGGAATTC  1031

seq1: chr12_112816730_112817797
seq2: B6Ng01-308P12.g_67_1134

seq1  GAATTCACTTGCCTCTGCCTCCCAAGTGTTGAGATTAAATTTGTGGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGCCTCTGCCTCCCAAGTGTTGAGATTAAATTTGTGGACCA  50

seq1  CTTCATCCTAGCCTTTTAAGAAGCTCTGGCTTCTTTTTTTTTTAAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCTAGCCTTTTAAGAAGCTCTGGCTTCTTTTTTTTTTAAGATTT  100

seq1  TATTTATTTGATGCATGTGAGTACACTGTAGCTGTACAGATGGTTGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTGATGCATGTGAGTACACTGTAGCTGTACAGATGGTTGTGAG  150

seq1  CCTTCATGTGGTTGTTGGAAATTGAATTTTTTAGGACCTCTGCTTGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGTGGTTGTTGGAAATTGAATTTTTTAGGACCTCTGCTTGCTCT  200

seq1  GGTCAATCTCGCTCGCTCCAGTCAGCCCTGGTTGCTCAGTCCCAAAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATCTCGCTCGCTCCAGTCAGCCCTGGTTGCTCAGTCCCAAAGATT  250

seq1  TATTTATTATACATAAGTGCACTGTAGCTGACTTCAGACCCACCAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTATACATAAGTGCACTGTAGCTGACTTCAGACCCACCAGAAGA  300

seq1  GGGCATCAGATCTCATTATGGGTGGTTGTGAGCATCATGTGGTTGCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCAGATCTCATTATGGGTGGTTGTGAGCATCATGTGGTTGCTGGG  350

seq1  ATTTGAACTCAGGAGCTTTGGAAGAGCAGTCAGTGCTCTTACCCACTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACTCAGGAGCTTTGGAAGAGCAGTCAGTGCTCTTACCCACTGAG  400

seq1  CCATCTCGCCAGCCTGAAGCTCTGGCTTTTATCTGCAGTGTAAATATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCGCCAGCCTGAAGCTCTGGCTTTTATCTGCAGTGTAAATATAAA  450

seq1  TCAAGAAACATAATTTGCAGTGATATTAGTTATTTCCACCTTGTATACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAACATAATTTGCAGTGATATTAGTTATTTCCACCTTGTATACTA  500

seq1  TTTGTTCTTAAGTGTTTGATTTCCATGTTACTGCTCACCTATGAATAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTAAGTGTTTGATTTCCATGTTACTGCTCACCTATGAATAGGA  550

seq1  ATATAAAAGTTATAGCTCAGAAAAAACAGTTAAAATTCTGGGGCCAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAGTTATAGCTCAGAAAAAACAGTTAAAATTCTGGGGCCAGAAG  600

seq1  ATGGTTGTGTCTAGTGTTCTGGGACTGGAATTTCAGGTGGTTGTGAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGTCTAGTGTTCTGGGACTGGAATTTCAGGTGGTTGTGAGACC  650

seq1  CGGTGTGGGACCTGGGAACTCAAACCTGTGTCTGGAACACCCCTTAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTGGGACCTGGGAACTCAAACCTGTGTCTGGAACACCCCTTAATCA  700

seq1  TTTAGCCACCTCTCCAGCCCAAAAGCAGGAGGCTTTTTAAAGATAAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCACCTCTCCAGCCCAAAAGCAGGAGGCTTTTTAAAGATAAAGTT  750

seq1  TACC-TTTTGTGGTATGTTCTATAATTGACTTGCAAAGGGATCCATTAGT  799
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTTGTGGTATGTTCTATAATTGACTTGCAAAGGGATCCATTAGT  800

seq1  AAATCCTG-TTTTTTTTTTGTTTTTTGTGTTTTTTTTAAAAAGATTTATT  848
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  AAATCCTGTTTTTTTTTTTGTTTTTTGTGTTTTTTTTTAAAAGATTTATT  850

seq1  TATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGA  900

seq1  GTCATATCTCCTTACAAATGGTTGTGAGCCACCGTGTGGTTGCTGGAATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATCTCCTTACAAATGGTTGTGAGCCACCGTGTGGTTGCTGGAATT  950

seq1  TGAACTC-AGGACC-TTCAGAAGAGCAGTCGGGTGCTCTTACTCGCT-GA  995
      ||||||| |||||| |||||||||||||||  |||||| |||||||| ||
seq2  TGAACTCAAGGACCTTTCAGAAGAGCAGTC--GTGCTC-TACTCGCTGGA  997

seq1  GCCATCTCACTAGCCCCAGTAAATCCTGTTTTTATTTGACAAGATTAGAA  1045
      ||  |||||||||||||||| ||||||  ||||||||||||||| |||||
seq2  GCATTCTCACTAGCCCCAGT-AATCCTTGTTTTATTTGACAAGA-TAGAA  1045

seq1  ATTAAATTTCAAAGCA-GTTGACG  1068
      ||| |||||||| ||| |||||||
seq2  ATT-AATTTCAAGGCAGGTTGACG  1068