BAC Information

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BAC

Clone NameB6Ng01-310J23
Chromosome12 (Build37)
Map Location 44,663,380 - 44,797,191
singlet/doubletdoublet
Overlap geneLOC100039059
Upstream genenone
Downstream geneENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310J23.bB6Ng01-310J23.g
ACCGA102551GA102552
length1,103776
definitionB6Ng01-310J23.b B6Ng01-310J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,796,161 - 44,797,191)(44,663,380 - 44,663,930)
sequence
gaattccaagctcagggtcagattcaaggattgcctaggacattggaaca
ctggtgaaggcttagctatatgtcaaaatcaatcctaaaaggcacttata
gtaaaacaatactgaaagagagcacatggatccatacaccagactaacgc
agaaacaggttttgagtatatgggctatgggatagccaaggttccaggag
gctgtttccatgaaactctgcccgatgactgctttcaagctttcaggcct
gtaatgcatgtcactactggagtggatgtagcagtatatatagagagagg
aagagaaggaacatagtccaagaaggcaagagaccaaaaggaccaagtaa
tcaaactgactgagctatagagggaagagaaactggggaaggctagacta
cccagctcagtccctgggatggacaagtttagggtaggggttggggtatg
ccagccaggcggactctgtaacaggtaaagactgaagggtgctggtagaa
actgatggacggtggtgtcttttatatattattagtaacctcagttgcca
tttgtccagggtttgagacctaacagtttctaactgggaaaatgaaagtc
cagccagaaaaaatcccctgccttagaatgcaagcatggattcaaatctt
gaagggaacacataaaaagggcacaggggatgaactgaaaaaagataaag
aagatcacatctactgatgacaggcaatcagaaaaacaaataacagtgat
aatttgctctcagcacactgtctggaaaagaacgattctacatattcaca
gatatttttataaaagctaaaaagctgagggaaagaagaaatgcctttac
agaataaaggaaacagaaaaaaaaagtcactatttgaagtgaccagtata
ataaattccatcagtataatcaaaaatactaaaatcacactcaaagtaaa
attatattacatttagtaatgcctatattcctgtttccaattattataat
ttaagagaaaggcaggtgaagacagaaattagccaaagcaatgttgacta
ctgcaaaggacagaaatagtaacagctgagccactatcttgaatttcaag
tgc

gaattcaataagttatatttaggaatacatacacacacccacatgcacac
aacaattaatgaaagtggggctacaaaattgaacacaattggagagaggt
atatgggaaggtttagaaagagaagggaaggaaaaatgcaattgaaatac
agtctcatatgccggggcctaggaaacacagaagtggatgctcacagtca
actagtggatggatcacagggctcccaagggaggagctagagaaagtaag
gagctaaagggatctgcaaccctgtaagtggaacaacattatgaactaac
aagtaccccggagctcttgactctagctgcatatgtatcaaaagatggcc
tagtcggccatcactggaaagagaggcccattggacacacaaactttttt
ttttttttgtgagctattgagtctttttttttccatttttattaggtatt
tagctcatttacatttccaatgctataccaaaagaccccatacccaccca
cccccactcccgtacccacccactccccctatttggccctggcgttcccc
tgtactggggcacataaagtctgcgtgtccaatgggcctctctttccagt
gatggccgactaggccatcttttgatacatatgcagctagagtcaagagc
tctggggtactggttagttcataatgtttgtttccaccttatagggttga
agatcccttttagctccttgggtacttttctcttagctctctccattgtg
agtccctgtgatccatccattagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_44796161_44797191
seq2: B6Ng01-310J23.b_128_1151 (reverse)

seq1  GCACTTGAAATCAAAGTATAGT-GCTCAGCTGTTACTATTTTCCTGTCCT  49
      |||||||||||  ||| ||||| ||||||||||||||||||  |||||||
seq2  GCACTTGAAATTCAAG-ATAGTGGCTCAGCTGTTACTATTT--CTGTCCT  47

seq1  TTGCAGTTAGTCAACATTGCTTTGGCTATTTTCTGTCTTCACCTGCCTTT  99
      |||||| ||||||||||||||||||||| |||||||||||||||||| ||
seq2  TTGCAG-TAGTCAACATTGCTTTGGCTAATTTCTGTCTTCACCTGCC-TT  95

seq1  TCTCCTTAAATTATAAATAATTGGAAACAGGAATATAGGCATTACTAAAT  149
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCT-CTTAAATTAT-AATAATTGGAAACAGGAATATAGGCATTACTAAAT  143

seq1  GTAAATATAATTTTACTTTGAGTGTGATTTTAGTATTTTTGATTATACTG  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GT-AATATAATTTTACTTTGAGTGTGATTTTAGTATTTTTGATTATACTG  192

seq1  ATGGAATTTATTATACTGGTCACTTCAAATAGTGACTTTTTTTTTCTGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATTTATTATACTGGTCACTTCAAATAGTGACTTTTTTTTTCTGTT  242

seq1  TCCTTTATTCTGTAAAGGCATTTCTTCTTTCCCTCAGCTTTTTAGCTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATTCTGTAAAGGCATTTCTTCTTTCCCTCAGCTTTTTAGCTTTT  292

seq1  ATAAAAATATCTGTGAATATGTAGAATCGTTCTTTTCCAGACAGTGTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATATCTGTGAATATGTAGAATCGTTCTTTTCCAGACAGTGTGCT  342

seq1  GAGAGCAAATTATCACTGTTATTTGTTTTTCTGATTGCCTGTCATCAGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAATTATCACTGTTATTTGTTTTTCTGATTGCCTGTCATCAGTA  392

seq1  GATGTGATCTTCTTTATCTTTTTTCAGTTCATCCCCTGTGCCCTTTTTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGATCTTCTTTATCTTTTTTCAGTTCATCCCCTGTGCCCTTTTTAT  442

seq1  GTGTTCCCTTCAAGATTTGAATCCATGCTTGCATTCTAAGGCAGGGGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCCTTCAAGATTTGAATCCATGCTTGCATTCTAAGGCAGGGGATT  492

seq1  TTTTCTGGCTGGACTTTCATTTTCCCAGTTAGAAACTGTTAGGTCTCAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGCTGGACTTTCATTTTCCCAGTTAGAAACTGTTAGGTCTCAAA  542

seq1  CCCTGGACAAATGGCAACTGAGGTTACTAATAATATATAAAAGACACCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGACAAATGGCAACTGAGGTTACTAATAATATATAAAAGACACCAC  592

seq1  CGTCCATCAGTTTCTACCAGCACCCTTCAGTCTTTACCTGTTACAGAGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCATCAGTTTCTACCAGCACCCTTCAGTCTTTACCTGTTACAGAGTC  642

seq1  CGCCTGGCTGGCATACCCCAACCCCTACCCTAAACTTGTCCATCCCAGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGGCTGGCATACCCCAACCCCTACCCTAAACTTGTCCATCCCAGGG  692

seq1  ACTGAGCTGGGTAGTCTAGCCTTCCCCAGTTTCTCTTCCCTCTATAGCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTGGGTAGTCTAGCCTTCCCCAGTTTCTCTTCCCTCTATAGCTC  742

seq1  AGTCAGTTTGATTACTTGGTCCTTTTGGTCTCTTGCCTTCTTGGACTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTTGATTACTTGGTCCTTTTGGTCTCTTGCCTTCTTGGACTATG  792

seq1  TTCCTTCTCTTCCTCTCTCTATATATACTGCTACATCCACTCCAGTAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCTTCCTCTCTCTATATATACTGCTACATCCACTCCAGTAGTG  842

seq1  ACATGCATTACAGGCCTGAAAGCTTGAAAGCAGTCATCGGGCAGAGTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATTACAGGCCTGAAAGCTTGAAAGCAGTCATCGGGCAGAGTTTC  892

seq1  ATGGAAACAGCCTCCTGGAACCTTGGCTATCCCATAGCCCATATACTCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACAGCCTCCTGGAACCTTGGCTATCCCATAGCCCATATACTCAA  942

seq1  AACCTGTTTCTGCGTTAGTCTGGTGTATGGATCCATGTGCTCTCTTTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTTTCTGCGTTAGTCTGGTGTATGGATCCATGTGCTCTCTTTCAG  992

seq1  TATTGTTTTACTATAAGTGCCTTTTAGGATTG  1031
      ||||||||||||||||||||||||||||||||
seq2  TATTGTTTTACTATAAGTGCCTTTTAGGATTG  1024


seq1: chr12_44663380_44663930
seq2: B6Ng01-310J23.g_63_613

seq1  GAATTCAATAAGTTATATTTAGGAATACATACACACACCCACATGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAGTTATATTTAGGAATACATACACACACCCACATGCACAC  50

seq1  AACAATTAATGAAAGTGGGGCTACAAAATTGAACACAATTGGAGAGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTAATGAAAGTGGGGCTACAAAATTGAACACAATTGGAGAGAGGT  100

seq1  ATATGGGAAGGTTTAGAAAGAGAAGGGAAGGAAAAATGCAATTGAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGAAGGTTTAGAAAGAGAAGGGAAGGAAAAATGCAATTGAAATAC  150

seq1  AGTCTCATATGCCGGGGCCTAGGAAACACAGAAGTGGATGCTCACAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCATATGCCGGGGCCTAGGAAACACAGAAGTGGATGCTCACAGTCA  200

seq1  ACTAGTGGATGGATCACAGGGCTCCCAAGGGAGGAGCTAGAGAAAGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGGATGGATCACAGGGCTCCCAAGGGAGGAGCTAGAGAAAGTAAG  250

seq1  GAGCTAAAGGGATCTGCAACCCTGTAAGTGGAACAACATTATGAACTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAAGGGATCTGCAACCCTGTAAGTGGAACAACATTATGAACTAAC  300

seq1  AAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCC  350

seq1  TAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACACAAACTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACACAAACTTTTTT  400

seq1  TTTTTTTTGTGAGCTATTGAGTCTTTTTTTTTCCATTTTTATTAGGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGTGAGCTATTGAGTCTTTTTTTTTCCATTTTTATTAGGTATT  450

seq1  TAGCTCATTTACATTTCCAATGCTATACCAAAAGACCCCATACCCACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATTTACATTTCCAATGCTATACCAAAAGACCCCATACCCACCCA  500

seq1  CCCCCACTCCCGTACCCACCCACTCCCCCTATTTGGCCCTGGCGTTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACTCCCGTACCCACCCACTCCCCCTATTTGGCCCTGGCGTTCCCC  550

seq1  T  551
      |
seq2  T  551


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