BAC Information

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BAC

Clone NameB6Ng01-311B10
Chromosome12 (Build37)
Map Location 84,191,898 - 84,364,587
singlet/doubletdoublet
Overlap geneRgs6
Upstream geneSipa1l1, LOC432675, EG666911
Downstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311B10.bB6Ng01-311B10.g
ACCGA102893GA102894
length1,079340
definitionB6Ng01-311B10.b B6Ng01-311B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,363,505 - 84,364,587)(84,191,898 - 84,192,237)
sequence
gaattcatgagttctagtgtctgccttgggttttcaatttcttgatgctt
ttgtagagtgttggctggtcattttatagctattcactttaggtttttgt
gctattttctaatgatgtaaacggggctgtgcattttcagtaaggatgtt
ataaaaaaggaggttgtgtccttctcagtgcattgtcatcaaggaggccc
atgattgacttagctctttgctggtgagaaagatattggacctgtcagct
gagggttctagctagtaagttcatagatcttggatgataatgcttgtatt
cggctctgcctctcttcatttggtgactaggaactgacatgtagtgtagt
atgttctgaatccttagctctgtaaagctaagatgaggttaaaccggcag
taatggatttattggccaatggaattacttgcaatctagctggggagact
aagaccagatagtcaccaatgctcaatatgtaagggatgtcatagagcag
tatgtgatatcttactgtggctcacagtagtcagggagattgtcttagag
ggaatcgtccagattggcatgctccagatagactgctgttctttaagctg
caggtttgctgtcagagagaatagaggtggagatgaatcaaaagcaaagg
tggaatcacaactcgatctgtgcaaaagagcaaaaataacatgatagaat
gtctaaatgttgtgctgtaatgttcttcttacccgtagtctttctcctcc
aatgatggtgtgttcctgagggcaaaagtgacatcattcctgtctgctga
tagtactcaataccactgtaatatcattattgattgataaagtgagaagt
tatcactgcatctgagctaattagtagaaatattctaaaatcttgttctg
tacacattaaggttctgatggagcagtggagaagctgtcattggaagcaa
gatccattggtccagcgagagagagagagagagagagagagagagagaga
gagagatgacgctgaagcatgaattgtagaagagggataaggagaaaaaa
tggaggatgtggcaagaatgaaggtggtg
atctgggagttcatcagaaggcagggagtaagggttgctagggactagtg
agtgggagctaaatccttgtctacgattaatctatcaagaacggttataa
aagcttatgcttcagaaacatagagtcaaacttgtctgagagcggctcat
atacaggaagaatcaaaatatggatggcagatgcttctgtgagaaaagtt
gggggaaacagccattgctctccacctgccccaaatgaaaatttagtatt
gtgtgataggcagttagttaggttcaccgggctcattacaaatatacaca
tatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_84363505_84364587
seq2: B6Ng01-311B10.b_47_1125 (reverse)

seq1  CACCACCTTCA-TCTT-CCACATCCT-CATTTTTTCTCCTTTATCCCTC-  46
      ||||||||||| |||| ||||||||| |||||||||||| ||||||||| 
seq2  CACCACCTTCATTCTTGCCACATCCTCCATTTTTTCTCC-TTATCCCTCT  49

seq1  TCTACCACTTCACTGCCCTTCAGCCGTCATCTTCTCTCTCTCTCTCTCTC  96
      |||| || |||| ||  |||||| ||||||| ||||||||||||||||||
seq2  TCTA-CAATTCA-TG--CTTCAG-CGTCATC-TCTCTCTCTCTCTCTCTC  93

seq1  TCTCTCTCTCTCTCTCTCTCTGCTTGGACCAATGGATCTTGCTTCCAATG  146
      |||||||||||||||||||| || ||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTC-GC-TGGACCAATGGATCTTGCTTCCAATG  141

seq1  ACAGCTTCTCCACTGCTCCATCAGAA-CTTAATGTGTACAGAACAAGATT  195
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACAGCTTCTCCACTGCTCCATCAGAACCTTAATGTGTACAGAACAAGATT  191

seq1  TTAGAATATTTCTACTAATTAGCTCAGATGCAGTGATAACTTCTCACTTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATATTTCTACTAATTAGCTCAGATGCAGTGATAACTTCTCACTTT  241

seq1  ATCAATCAATAATGATATTACAGTGGTATTGAGTACTATCAGCAGACAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCAATAATGATATTACAGTGGTATTGAGTACTATCAGCAGACAGG  291

seq1  AATGATGTCACTTTTGCCCTCAGGAACACACCATCATTGGAGGAGAAAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGTCACTTTTGCCCTCAGGAACACACCATCATTGGAGGAGAAAGA  341

seq1  CTACGGGTAAGAAGAACATTACAGCACAACATTTAGACATTCTATCATGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGGTAAGAAGAACATTACAGCACAACATTTAGACATTCTATCATGT  391

seq1  TATTTTTGCTCTTTTGCACAGATCGAGTTGTGATTCCACCTTTGCTTTTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGCTCTTTTGCACAGATCGAGTTGTGATTCCACCTTTGCTTTTG  441

seq1  ATTCATCTCCACCTCTATTCTCTCTGACAGCAAACCTGCAGCTTAAAGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTCCACCTCTATTCTCTCTGACAGCAAACCTGCAGCTTAAAGAA  491

seq1  CAGCAGTCTATCTGGAGCATGCCAATCTGGACGATTCCCTCTAAGACAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTCTATCTGGAGCATGCCAATCTGGACGATTCCCTCTAAGACAAT  541

seq1  CTCCCTGACTACTGTGAGCCACAGTAAGATATCACATACTGCTCTATGAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGACTACTGTGAGCCACAGTAAGATATCACATACTGCTCTATGAC  591

seq1  ATCCCTTACATATTGAGCATTGGTGACTATCTGGTCTTAGTCTCCCCAGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTACATATTGAGCATTGGTGACTATCTGGTCTTAGTCTCCCCAGC  641

seq1  TAGATTGCAAGTAATTCCATTGGCCAATAAATCCATTACTGCCGGTTTAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGCAAGTAATTCCATTGGCCAATAAATCCATTACTGCCGGTTTAA  691

seq1  CCTCATCTTAGCTTTACAGAGCTAAGGATTCAGAACATACTACACTACAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTTAGCTTTACAGAGCTAAGGATTCAGAACATACTACACTACAT  741

seq1  GTCAGTTCCTAGTCACCAAATGAAGAGAGGCAGAGCCGAATACAAGCATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTCCTAGTCACCAAATGAAGAGAGGCAGAGCCGAATACAAGCATT  791

seq1  ATCATCCAAGATCTATGAACTTACTAGCTAGAACCCTCAGCTGACAGGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCAAGATCTATGAACTTACTAGCTAGAACCCTCAGCTGACAGGTC  841

seq1  CAATATCTTTCTCACCAGCAAAGAGCTAAGTCAATCATGGGCCTCCTTGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCTTTCTCACCAGCAAAGAGCTAAGTCAATCATGGGCCTCCTTGA  891

seq1  TGACAATGCACTGAGAAGGACACAACCTCCTTTTTTATAACATCCTTACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGCACTGAGAAGGACACAACCTCCTTTTTTATAACATCCTTACT  941

seq1  GAAAATGCACAGCCCCGTTTACATCATTAGAAAATAGCACAAAAACCTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCACAGCCCCGTTTACATCATTAGAAAATAGCACAAAAACCTAA  991

seq1  AGTGAATAGCTATAAAATGACCAGCCAACACTCTACAAAAGCATCAAGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATAGCTATAAAATGACCAGCCAACACTCTACAAAAGCATCAAGAA  1041

seq1  ATTGAAAACCCAAGGCAGACACTAGAACTCATGAATTC  1083
      ||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAACCCAAGGCAGACACTAGAACTCATGAATTC  1079

seq1: chr12_84191898_84192237
seq2: B6Ng01-311B10.g_74_413

seq1  ATCTGGGAGTTCATCAGAAGGCAGGGAGTAAGGGTTGCTAGGGACTAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGAGTTCATCAGAAGGCAGGGAGTAAGGGTTGCTAGGGACTAGTG  50

seq1  AGTGGGAGCTAAATCCTTGTCTACGATTAATCTATCAAGAACGGTTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGCTAAATCCTTGTCTACGATTAATCTATCAAGAACGGTTATAA  100

seq1  AAGCTTATGCTTCAGAAACATAGAGTCAAACTTGTCTGAGAGCGGCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTATGCTTCAGAAACATAGAGTCAAACTTGTCTGAGAGCGGCTCAT  150

seq1  ATACAGGAAGAATCAAAATATGGATGGCAGATGCTTCTGTGAGAAAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGAAGAATCAAAATATGGATGGCAGATGCTTCTGTGAGAAAAGTT  200

seq1  GGGGGAAACAGCCATTGCTCTCCACCTGCCCCAAATGAAAATTTAGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAACAGCCATTGCTCTCCACCTGCCCCAAATGAAAATTTAGTATT  250

seq1  GTGTGATAGGCAGTTAGTTAGGTTCACCGGGCTCATTACAAATATACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATAGGCAGTTAGTTAGGTTCACCGGGCTCATTACAAATATACACA  300

seq1  TATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  340
      ||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  340