BAC Information

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BAC

Clone NameB6Ng01-314P10
Chromosome12 (Build37)
Map Location 36,300,806 - 36,440,654
singlet/doubletdoublet
Overlap geneLOC100043575
Upstream gene4921508M14Rik, Prps1l1, Snx13, Ahr
Downstream geneLOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314P10.bB6Ng01-314P10.g
ACCGA105739GA105740
length1,1221,133
definitionB6Ng01-314P10.b B6Ng01-314P10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,300,806 - 36,301,950)(36,439,517 - 36,440,654)
sequence
gaattcttaaatgtaaatatatactaaaagataaatatatgtttaaggta
gataatacttgacagcatcccaaacagaatgtccctatgctgtcagggaa
gaagccatagctatcctcagcctgtctcctcttgtggttaagatcagacc
ctggtgggaaatgagggcagaaaagcaaatgctatagatttctgactcta
tgtttagccttcttaagccttaatatcttcacatgaaaaaagatcaggaa
aataagaaagccaatttcaaaggatgtgagtatgagagaaactgaccaat
tgtagaacactttgcacgttgacattttacactgcatccttagcattcca
ttttgagtgttatttgccttctcgcttcaaaagggtccatcccctgcctg
cttgagtggaaagcaaactccatctctttcttagagatgaaagcctgttc
cctccaatagcactgaaaggcttgaatctaactgggaagagctgagttgt
acaaccccatgacaaaaggagtaaagaggaacagaccaagggttcatctc
caagaaacaccggccatagtcaaaacaaatccaactatcaggacaacggt
gaacagggtggagcaggagagtcttctactgggaattgagggtgagtggc
aggtgacaggaccccttgtgttaacttcttttaggaaaagaacatttcca
cgcatttgtttccactgggagaaagctctattgctttctcaaaggtaaat
ggcttcgaatggattctgcttgatctctagatatgcagaattttttaaat
ccctagtagtttccagacatctttttgtctaattctagctcactttatct
ttcctcttccaccattgttcccagccgtgggcccatggaacaagtggata
tgctttctggcatagaaacatttcactatgtaactaacatcccctaaacc
ccaagtttcaaacagtgacctaacactgagcatggggcattattagaggc
cagtgcacaggtcattgtcttttgggactcagatattttagaagcacata
tgtagtatgttctggtgctgtgaaaaatactgaacaaatcatgagagtac
gctttactatgactagagtttg
gaattccataaataaataatgtctctgcactgtgtcttggcatgcttggt
ttgagcgtccacaaaaaacaaaaacaaaaacaaacaacccccccccccca
aaaaaaagaaccaaaagtagtttcacacttaaacacacacacacacacat
ctacacacataaactaacatacatatatgcacatacaggtacatacatac
agacacacacatgcatacacatactaaaacacacatatatttacacacac
acacacgggaggtaggggagaagttgtagatttctgatgaactcattttc
ttgactgagaagtcaatgaaatgttatattgaagggaataaagccttaat
ttcttttaggtcagtacttctcttgagagacatttttcttcggtgccctg
ggaaactgaactttctcaatgggattagtggcatttgctgtttcaaatcg
aaacaggatctcctggcctacactaactttacaatcggcaccatctactc
tgtggtcactgctgaagtattagagctaacctaaggaggcaggaagtgac
attaagctttgttctgttctattctggcctagagatggagtctgagataa
agaaaagactgcaactttcctgtaacacaactttcctgtaacacaattct
tgcctgtaggggcaaggctttcaccgaaaagccaaaagggatttttatgg
tcaaccaagttgcatatttcccttgtccttcatgtttcaaatggctatag
atacaaccagtttccccttagctatattcttgcaagtgagggagagcagg
acagagagaaggagggtatcttagaaaccttaattccatttacagaaata
ccacagcagtctgcacgtatatcacataattatgtctgaggtaagcctag
ggaatgtagtcatttgttcagggttgtttttccattgcaaaatctccaaa
ataagaattatcaagtctatcaaatgttaatttgtcagaaaaaacagaat
agctaataggatactagatttatatgtaaataagagatcatcctgaaagc
tccatgtctccgaagcagcatgattggatgatgaatgaagggagtcttga
aagaaacctactcatctttcctaacggctacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_36300806_36301950
seq2: B6Ng01-314P10.b_46_1167

seq1  GAATTCTTAAATGTAAATATATACTAAAAGATAAATATATGTTTAAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAATGTAAATATATACTAAAAGATAAATATATGTTTAAGGTA  50

seq1  GATAATACTTGACAGCATCCCAAACAGAATGTCCCTATGCTGTCAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATACTTGACAGCATCCCAAACAGAATGTCCCTATGCTGTCAGGGAA  100

seq1  GAAGCCATAGCTATCCTCAGCCTGTCTCCTCTTGTGGTTAAGATCAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATAGCTATCCTCAGCCTGTCTCCTCTTGTGGTTAAGATCAGACC  150

seq1  CTGGTGGGAAATGAGGGCAGAAAAGCAAATGCTATAGATTTCTGACTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGGAAATGAGGGCAGAAAAGCAAATGCTATAGATTTCTGACTCTA  200

seq1  TGTTTAGCCTTCTTAAGCCTTAATATCTTCACATGAAAAAAGATCAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGCCTTCTTAAGCCTTAATATCTTCACATGAAAAAAGATCAGGAA  250

seq1  AATAAGAAAGCCAATTTCAAAGGATGTGAGTATGAGAGAAACTGACCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAAAGCCAATTTCAAAGGATGTGAGTATGAGAGAAACTGACCAAT  300

seq1  TGTAGAACACTTTGCACGTTGACATTTTACACTGCATCCTTAGCATTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAACACTTTGCACGTTGACATTTTACACTGCATCCTTAGCATTCCA  350

seq1  TTTTGAGTGTTATTTGCCTTCTCGCTTCAAAAGGGTCCATCCCCTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTGTTATTTGCCTTCTCGCTTCAAAAGGGTCCATCCCCTGCCTG  400

seq1  CTTGAGTGGAAAGCAAACTCCATCTCTTTCTTAGAGATGAAAGCCTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTGGAAAGCAAACTCCATCTCTTTCTTAGAGATGAAAGCCTGTTC  450

seq1  CCTCCAATAGCACTGAAAGGCTTGAATCTAACTGGGAAGAGCTGAGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAATAGCACTGAAAGGCTTGAATCTAACTGGGAAGAGCTGAGTTGT  500

seq1  ACAACCCCATGACAAAAGGAGTAAAGAGGAACAGACCAAGGGTTCATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCCATGACAAAAGGAGTAAAGAGGAACAGACCAAGGGTTCATCTC  550

seq1  CAAGAAACACCGGCCATAGTCAAAACAAATCCAACTATCAGGACAACGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACACCGGCCATAGTCAAAACAAATCCAACTATCAGGACAACGGT  600

seq1  GAACAGGGTGGAGCAGGAGAGTCTTCTACTGGGAATTGAGGGTGAGTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGTGGAGCAGGAGAGTCTTCTACTGGGAATTGAGGGTGAGTGGC  650

seq1  AGGTGACAGGACCCCTTGTGTTAACTTCTTTTAGGAAAAGAACATTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACAGGACCCCTTGTGTTAACTTCTTTTAGGAAAAGAACATTTCCA  700

seq1  CGCATTTGTTTCCACTGGGAGAAAGCTCTATTGCTTTCTCAAAGGTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTTGTTTCCACTGGGAGAAAGCTCTATTGCTTTCTCAAAGGTAAAT  750

seq1  GGCTTCGAATGGATTCTGCTTGATCTCTAGATATGCAGAATTTTTTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCGAATGGATTCTGCTTGATCTCTAGATATGCAGAATTTTTTAAAT  800

seq1  CCCTAGTAGTTTCCAGACATCTTTTTGTCTAATTCTAGCTCACTTTATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTAGTTTCCAGACATCTTTTTGTCTAATTCTAGCTCACTTTATCT  850

seq1  TTCCTCTTCCACCATTGTTCCCAGCCGTGGGCCCATGGAACAAGTGGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTCCACCATTGTTCCCAGCCGTGGGCCCATGGAACAAGTGGATA  900

seq1  TGCTTTCTGGCATAGAAACATTTCACTATGTAACTAACATCCCCTAAACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTGGCATAGAAACATTTCACTATGTAACTAACATCCCCTAAACC  950

seq1  CCAAGTTTCAAACAGTGACCTAACACTGAGCATGGGGCATTATTAGA-GC  999
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCAAGTTTCAAACAGTGACCTAACACTGAGCATGGGGCATTATTAGAGGC  1000

seq1  CAGTGCACAGGGGTCAATTGTTCCTTTTGGGAACTCAAGGATATTTTAGA  1049
      |||||||||  |||| |||||  |||||||| |||||  |||||||||||
seq2  CAGTGCACA--GGTC-ATTGT--CTTTTGGG-ACTCA--GATATTTTAGA  1042

seq1  AAAGCCACATATGTTAGTTATGTTTCTTGTTGCTGTGAAAAAAATACTTG  1099
      |    |||||||| ||| ||||||   || |||||||  |||||||| ||
seq2  A---GCACATATG-TAG-TATGTT--CTGGTGCTGTG--AAAAATAC-TG  1082

seq1  ACCAAATCAATTGAAGAAGTAAGGGTTTACTATGACCTAGAGTTTG  1145
      | |||||||  |||   ||| | | |||||||||| ||||||||||
seq2  AACAAATCA--TGA--GAGT-ACGCTTTACTATGA-CTAGAGTTTG  1122

seq1: chr12_36439517_36440654
seq2: B6Ng01-314P10.g_68_1200 (reverse)

seq1  ATGTAGCGTGTAGAAAAGATGAGTAGTGTTTCTTTTTAAGACTCCCCTCA  50
      |||||||   ||| |||||||||||| ||||| ||| ||||||||| |||
seq2  ATGTAGCCGTTAGGAAAGATGAGTAG-GTTTC-TTTCAAGACTCCCTTCA  48

seq1  CTCATCCTTCAATCATGCTTCCTTTGGAGACATGGAAGCCTTCAGGATGA  100
       ||||| | ||||||||| | ||| |||||||||| ||| ||||||||||
seq2  TTCATCATCCAATCATGC-TGCTTCGGAGACATGG-AGCTTTCAGGATGA  96

seq1  TTCTC-TATTTACAATATAAATCTAGTTATCCTTATTAGCTATTCTGTTT  149
       |||| ||||||| |||||||||||| ||||| |||||||||||||||||
seq2  -TCTCTTATTTAC-ATATAAATCTAG-TATCC-TATTAGCTATTCTGTTT  142

seq1  TTCTTGACAAATTAACATTTGATAGACTTGATAATTCT--ATTTGGAGAT  197
      ||  ||||||||||||||||||||||||||||||||||   |||||||||
seq2  TTTCTGACAAATTAACATTTGATAGACTTGATAATTCTTATTTTGGAGAT  192

seq1  TTTGCAATGGAAAAACAACCCTGAACAAATGACTACATTCCCTAGGCTTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATGGAAAAACAACCCTGAACAAATGACTACATTCCCTAGGCTTA  242

seq1  CCTCAGACATAATTATGTGATATACGTGCAGACTGCTGTGGTATTTCTGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGACATAATTATGTGATATACGTGCAGACTGCTGTGGTATTTCTGT  292

seq1  AAATGGAATTAAGGTTTCTAAGATACCCTCCTTCTCTCTGTCCTGCTCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAATTAAGGTTTCTAAGATACCCTCCTTCTCTCTGTCCTGCTCTC  342

seq1  CCTCACTTGCAAGAATATAGCTAAGGGGAAACTGGTTGTATCTATAGCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTTGCAAGAATATAGCTAAGGGGAAACTGGTTGTATCTATAGCCA  392

seq1  TTTGAAACATGAAGGACAAGGGAAATATGCAACTTGGTTGACCATAAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACATGAAGGACAAGGGAAATATGCAACTTGGTTGACCATAAAAA  442

seq1  TCCCTTTTGGCTTTTCGGTGAAAGCCTTGCCCCTACAGGCAAGAATTGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTGGCTTTTCGGTGAAAGCCTTGCCCCTACAGGCAAGAATTGTG  492

seq1  TTACAGGAAAGTTGTGTTACAGGAAAGTTGCAGTCTTTTCTTTATCTCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGAAAGTTGTGTTACAGGAAAGTTGCAGTCTTTTCTTTATCTCAG  542

seq1  ACTCCATCTCTAGGCCAGAATAGAACAGAACAAAGCTTAATGTCACTTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATCTCTAGGCCAGAATAGAACAGAACAAAGCTTAATGTCACTTCC  592

seq1  TGCCTCCTTAGGTTAGCTCTAATACTTCAGCAGTGACCACAGAGTAGATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTTAGGTTAGCTCTAATACTTCAGCAGTGACCACAGAGTAGATG  642

seq1  GTGCCGATTGTAAAGTTAGTGTAGGCCAGGAGATCCTGTTTCGATTTGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGATTGTAAAGTTAGTGTAGGCCAGGAGATCCTGTTTCGATTTGAA  692

seq1  ACAGCAAATGCCACTAATCCCATTGAGAAAGTTCAGTTTCCCAGGGCACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAATGCCACTAATCCCATTGAGAAAGTTCAGTTTCCCAGGGCACC  742

seq1  GAAGAAAAATGTCTCTCAAGAGAAGTACTGACCTAAAAGAAATTAAGGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAATGTCTCTCAAGAGAAGTACTGACCTAAAAGAAATTAAGGCT  792

seq1  TTATTCCCTTCAATATAACATTTCATTGACTTCTCAGTCAAGAAAATGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCCTTCAATATAACATTTCATTGACTTCTCAGTCAAGAAAATGAG  842

seq1  TTCATCAGAAATCTACAACTTCTCCCCTACCTCCCGTGTGTGTGTGTGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGAAATCTACAACTTCTCCCCTACCTCCCGTGTGTGTGTGTGTA  892

seq1  AATATATGTGTGTTTTAGTATGTGTATGCATGTGTGTGTCTGTATGTATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGTGTGTTTTAGTATGTGTATGCATGTGTGTGTCTGTATGTATG  942

seq1  TACCTGTATGTGCATATATGTATGTTAGTTTATGTGTGTAGATGTGTGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTATGTGCATATATGTATGTTAGTTTATGTGTGTAGATGTGTGTG  992

seq1  TGTGTGTGTTTAAGTGTGAAACTACTTTTGGTTCTTTTTTTTGGGGGGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTTTAAGTGTGAAACTACTTTTGGTTCTTTTTTTTGGGGGGGG  1042

seq1  GGGGTTGTTTGTTTTTGTTTTTGTTTTTTGTGGACGCTCAAACCAAGCAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGTTTGTTTTTGTTTTTGTTTTTTGTGGACGCTCAAACCAAGCAT  1092

seq1  GCCAAGACACAGTGCAGAGACATTATTTATTTATGGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGACACAGTGCAGAGACATTATTTATTTATGGAATTC  1133